Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 1.2e-122 443.4 244 100.0
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 3.3e-101 372.1 244 80.7
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 8.4e-97 357.5 248 75.8
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 2.8e-84 315.8 251 66.9
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 1.8e-83 313.2 248 65.7
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 3.1e-83 312.4 248 65.7
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 1.7e-81 306.6 246 65.0
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 2.2e-81 306.2 258 67.1
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 3.2e-80 302.4 259 63.7
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 1.5e-77 293.5 257 65.4
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 3.7e-76 288.9 205 82.0
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 2.2e-73 279.6 256 64.1
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 3.2e-72 275.8 254 59.4
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 3.2e-72 275.8 220 64.5
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 5.5e-72 275.0 256 64.1
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.6e-71 273.5 254 59.1
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 2.1e-71 273.1 253 63.6
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 3.6e-71 272.3 254 63.4
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 6.1e-71 271.6 258 62.8
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 1.8e-70 270.0 256 61.3
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 3.0e-70 269.2 253 57.3
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 5.1e-70 268.5 255 63.1
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 8.8e-70 267.7 255 63.1
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 1.5e-69 266.9 239 57.7
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 2.0e-69 266.5 256 56.2
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 3.3e-69 265.8 251 57.4
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.3e-69 265.8 255 62.4
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 4.4e-69 265.4 274 54.4
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 7.4e-69 264.6 254 61.4
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 1.3e-68 263.8 256 57.8
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 1.3e-68 263.8 226 62.8
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 1.7e-68 263.5 252 58.3
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 1.7e-68 263.5 245 58.0
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 1.7e-68 263.5 229 59.8
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 3.7e-68 262.3 220 63.6
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 3.7e-68 262.3 252 57.1
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 4.8e-68 261.9 257 58.0
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 4.8e-68 261.9 216 63.4
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 6.3e-68 261.5 264 56.8
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 8.2e-68 261.2 248 62.1
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 1.8e-67 260.0 220 64.1
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 2.4e-67 259.6 251 63.7
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 4.1e-67 258.8 257 57.2
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 4.1e-67 258.8 240 58.8
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 5.3e-67 258.5 252 56.0
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 5.3e-67 258.5 253 56.5
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 1.2e-66 257.3 253 55.7
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.2e-66 257.3 245 55.9
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.2e-66 257.3 253 62.1
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.2e-66 257.3 217 62.2
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 1.5e-66 256.9 253 56.1
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 2.6e-66 256.1 257 55.6
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 3.4e-66 255.8 227 60.4
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 4.5e-66 255.4 258 55.0
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 4.5e-66 255.4 258 55.0
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 4.5e-66 255.4 252 57.9
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 4.5e-66 255.4 217 60.8
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 1.3e-65 253.8 231 58.0
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 1.3e-65 253.8 246 56.9
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 1.3e-65 253.8 253 56.5
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 1.3e-65 253.8 254 56.3
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 1.7e-65 253.4 246 57.3
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 1.7e-65 253.4 252 55.2
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 1.7e-65 253.4 248 57.7
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 1.7e-65 253.4 253 58.1
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 2.2e-65 253.1 257 55.3
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 2.2e-65 253.1 254 55.9
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 2.9e-65 252.7 253 62.8
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 2.9e-65 252.7 278 50.7
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 2.9e-65 252.7 253 56.9
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 3.8e-65 252.3 219 60.7
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 5.0e-65 251.9 227 57.7
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 6.5e-65 251.5 226 60.2
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 8.5e-65 251.1 225 58.7
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 8.5e-65 251.1 216 59.7
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 8.5e-65 251.1 253 61.3
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 1.1e-64 250.8 256 55.9
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 1.1e-64 250.8 219 60.3
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 1.4e-64 250.4 253 53.8
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 1.9e-64 250.0 247 57.5
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 1.9e-64 250.0 225 57.8
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 4.2e-64 248.8 248 55.2
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 7.2e-64 248.1 256 53.9
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 7.2e-64 248.1 256 53.9
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 9.4e-64 247.7 286 50.3
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 1.2e-63 247.3 254 57.5
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 2.1e-63 246.5 220 61.4
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 2.7e-63 246.1 219 60.3
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 4.7e-63 245.4 225 57.3
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 6.1e-63 245.0 246 54.5
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 1.0e-62 244.2 245 55.9
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 1.4e-62 243.8 246 53.7
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 1.8e-62 243.4 202 71.8
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 3.0e-62 242.7 219 56.6
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 3.9e-62 242.3 227 59.0
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 3.9e-62 242.3 191 76.4
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 6.7e-62 241.5 221 58.4
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 6.7e-62 241.5 257 54.1
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 8.8e-62 241.1 242 56.6
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 5.7e-61 238.4 230 59.1
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 2.2e-60 236.5 227 57.3
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 4.8e-60 235.3 253 58.1
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 4.8e-60 235.3 228 54.8
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 6.3e-60 235.0 174 70.1
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 1.1e-59 234.2 241 55.2
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 1.1e-59 234.2 189 62.4
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 3.1e-59 232.6 227 58.1
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 7.0e-59 231.5 241 51.9
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 1.2e-58 230.7 167 82.6
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 3.5e-58 229.2 151 74.8
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 3.5e-58 229.2 277 49.8
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 7.7e-58 228.0 241 50.6
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 5.0e-57 225.3 220 55.9
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 8.5e-57 224.6 207 57.5
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 4.2e-56 222.2 223 54.7
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 2.1e-55 219.9 185 64.3
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 1.0e-54 217.6 248 50.0
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 2.3e-54 216.5 248 50.0
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 4.0e-54 215.7 227 53.7
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 4.0e-54 215.7 227 53.7
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 8.2e-52 208.0 218 50.0
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 1.8e-51 206.8 230 49.6
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 9.1e-51 204.5 186 58.1
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 9.1e-51 204.5 150 69.3
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 2.0e-50 203.4 225 57.3
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 5.5e-48 195.3 232 48.3
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 6.3e-44 181.8 228 48.2
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 1.8e-43 180.3 235 49.8
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 3.5e-42 176.0 224 47.3
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 2.3e-41 173.3 122 68.0
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 8.6e-41 171.4 125 65.6
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 6.1e-39 165.2 166 50.0
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 1.0e-38 164.5 150 62.7
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 4.5e-34 149.1 125 64.0
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 4.5e-34 149.1 236 36.9
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 3.3e-32 142.9 238 37.8
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 7.3e-32 141.7 175 49.1
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 2.9e-28 129.8 80 75.0
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 4.9e-28 129.0 150 51.3
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 8.3e-28 128.3 120 55.8
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.1e-27 127.9 208 40.4
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.2e-26 124.4 120 55.8
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 2.0e-26 123.6 119 55.5
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 4.4e-21 105.9 115 47.0
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 8.3e-20 101.7 119 47.9
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 8.3e-20 101.7 119 47.9
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 8.3e-20 101.7 119 47.9
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 1.7e-17 94.0 117 50.4
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 8.9e-14 81.6 213 28.6
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 2.6e-13 80.1 193 30.6
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 7.1e-11 72.0 57 64.9
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 9.2e-11 71.6 102 43.1
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 7.8e-10 68.6 47 66.0
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 8.6e-09 65.1 99 40.4
C09p03590 Brassica napus HOM05D004631 ORTHO05D005223 2.5e-08 63.5 61 54.1
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 9.5e-08 61.6 72 45.8
Cre10.g443650 Chlamydomonas reinhardtii HOM05D004631 ORTHO05D005223 2.4e-06 57.0 123 32.5
SMO361G0571 Selaginella moellendorffii HOM05D018282 ORTHO05D005223 6.8e-06 55.5 65 46.2


User provided reference genes

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