Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g083960 Pisum sativum HOM05D007989 ORTHO05D010087 9.3e-93 343.6 181 100.0
Medtr3g086760 Medicago truncatula HOM05D007989 ORTHO05D010087 1.8e-64 249.6 209 69.9
TPR.G30536 Trifolium pratense HOM05D007989 ORTHO05D010087 1.9e-61 239.6 197 71.6
Ca_30637_v3 Cicer arietinum L. HOM05D007989 ORTHO05D010087 3.3e-58 228.8 196 69.4
Lj6g0026253 Lotus japonicus HOM05D007989 ORTHO05D010087 4.4e-50 201.8 193 62.7
Phvul.001G254200 Phaseolus vulgaris HOM05D007989 ORTHO05D010087 2.0e-47 193.0 194 59.3
Glyma.18G014700 Glycine max HOM05D007989 ORTHO05D010087 2.3e-46 189.5 192 60.4
Glyma.11G242400 Glycine max HOM05D007989 ORTHO05D010087 2.1e-44 183.0 195 59.5
VMungo1383G0535 Vigna mungo HOM05D007989 ORTHO05D010087 7.0e-40 167.9 201 54.2
arahy.Tifrunner.gnm1.ann1.92LXSJ Arachis hypogaea HOM05D007989 ORTHO05D010087 1.1e-37 160.6 211 51.7
Ca_16505_v3 Cicer arietinum L. HOM05D007989 ORTHO05D010087 4.7e-36 155.2 143 67.8
arahy.Tifrunner.gnm1.ann1.FU6RJX Arachis hypogaea HOM05D007989 ORTHO05D010087 6.1e-36 154.8 207 51.2
Lalb_Chr08g0230941 Lupinus albus HOM05D007989 ORTHO05D010087 6.0e-31 138.3 142 57.7
TWI53G0073 Tripterygium wilfordii HOM05D007989 ORTHO05D010087 9.5e-29 131.0 169 50.3
Cfa002588 Carpinus fangiana HOM05D007989 ORTHO05D010087 2.1e-28 129.8 181 49.2
Haze_24825 Corylus avellana HOM05D007989 ORTHO05D010087 1.8e-27 126.7 176 50.6
Haze_24830 Corylus avellana HOM05D007989 ORTHO05D010087 1.8e-27 126.7 176 50.6
Dinv08871 Davidia involucrata HOM05D007989 ORTHO05D010087 5.2e-27 125.2 177 48.0
Prupe.6G193900 Prunus persica HOM05D007989 ORTHO05D010087 5.2e-27 125.2 187 49.7
Thecc.01G095100 Theobroma cacao HOM05D007989 ORTHO05D010087 8.9e-27 124.4 186 46.8
CiPaw.04G104100 Carya illinoinensis HOM05D007989 ORTHO05D010087 2.2e-25 119.8 190 45.3
COL.COLO4_27300 Corchorus olitorius HOM05D007989 ORTHO05D010087 2.2e-25 119.8 174 47.7
RcHm_v2.0_Chr2g0112271 Rosa chinensis HOM05D007989 ORTHO05D010087 2.2e-25 119.8 177 50.3
CANSAT01G0464 Cannabis sativa HOM05D007989 ORTHO05D010087 2.9e-25 119.4 185 45.4
CiPaw.03G146300 Carya illinoinensis HOM05D007989 ORTHO05D010087 2.9e-25 119.4 182 46.7
Duzib147G0239 Durio zibethinus HOM05D007989 ORTHO05D010087 3.7e-25 119.0 177 45.8
Psat3g119280 Pisum sativum HOM05D007989 ORTHO05D010087 3.7e-25 119.0 67 95.5
MD15G1317900 Malus domestica HOM05D007989 ORTHO05D010087 8.3e-25 117.9 177 45.2
QL06p047951 Quercus lobata HOM05D007989 ORTHO05D010087 1.1e-24 117.5 186 46.8
MD01G1036700 Malus domestica HOM05D007989 ORTHO05D010087 3.2e-24 115.9 171 47.4
Atru.chr3.1338 Acer truncatum HOM05D007989 ORTHO05D010087 4.1e-24 115.5 179 46.4
FvH4_1g20210 Fragaria vesca HOM05D007989 ORTHO05D010087 1.2e-23 114.0 174 48.9
FAN19G2348 Fragaria x ananassa HOM05D007989 ORTHO05D010087 1.6e-23 113.6 174 48.9
Manes.13G097300 Manihot esculenta HOM05D007989 ORTHO05D010087 1.6e-23 113.6 177 46.9
FAN28G0040 Fragaria x ananassa HOM05D007989 ORTHO05D010087 2.7e-23 112.8 163 49.1
Potri.007G097400 Populus trichocarpa HOM05D007989 ORTHO05D010087 2.7e-23 112.8 121 56.2
FAN26G0087 Fragaria x ananassa HOM05D007989 ORTHO05D010087 6.0e-23 111.7 174 47.7
FAN23G0861 Fragaria x ananassa HOM05D007989 ORTHO05D010087 2.3e-22 109.8 174 47.1
Rhsim10G0168900 Rhododendron simsii HOM05D007989 ORTHO05D010087 1.9e-21 106.7 121 50.4
Potri.005G071400 Populus trichocarpa HOM05D007989 ORTHO05D010087 2.5e-21 106.3 179 46.4
Sabra07G0080700 Salix brachista HOM05D007989 ORTHO05D010087 3.3e-21 105.9 121 54.5
Ciclev10026467m.g Citrus clementina HOM05D007989 ORTHO05D010087 4.3e-21 105.5 175 41.7
Sabra05G0058400 Salix brachista HOM05D007989 ORTHO05D010087 2.8e-20 102.8 178 45.5
TAR628G0250 Trochodendron aralioides HOM05D007989 ORTHO05D010087 4.7e-20 102.1 176 40.9
Cpa.g.sc55.66 Carica papaya HOM05D007989 ORTHO05D010087 1.1e-19 100.9 126 50.0
Nn1g05466 Nelumbo nucifera HOM05D007989 ORTHO05D010087 2.3e-19 99.8 198 42.9
vmacro12990 Vaccinium macrocarpon HOM05D007989 ORTHO05D010087 3.4e-18 95.9 119 48.7
Gohir.D03G040900 Gossypium hirsutum HOM05D007989 ORTHO05D010087 7.5e-18 94.7 191 40.8
Actinidia06535 Actinidia chinensis HOM05D007989 ORTHO05D010087 9.9e-18 94.4 122 49.2
Gohir.A02G130000 Gossypium hirsutum HOM05D007989 ORTHO05D010087 1.3e-17 94.0 192 40.6
Gorai.003G041700 Gossypium raimondii HOM05D007989 ORTHO05D010087 1.7e-17 93.6 192 40.6
Aqoxy6G00707 Aquilegia oxysepala HOM05D007989 ORTHO05D010087 6.4e-17 91.7 201 39.3
Nitab4.5_0005930g0030 Nicotiana tabacum HOM05D007989 ORTHO05D010087 8.3e-17 91.3 166 38.0
MBI06_g03317_MAGBIO Magnolia biondii HOM05D007989 ORTHO05D010087 1.1e-16 90.9 191 40.8
PSO541G3922 Papaver somniferum HOM05D007989 ORTHO05D010087 4.1e-16 89.0 166 38.0
Hma1.2p1_0019F.1_g013880 Hydrangea macrophylla HOM05D007989 ORTHO05D010087 5.4e-16 88.6 120 48.3
PSO675G2967 Papaver somniferum HOM05D007989 ORTHO05D010087 5.4e-16 88.6 167 35.9
Nitab4.5_0000241g0120 Nicotiana tabacum HOM05D007989 ORTHO05D010087 2.1e-15 86.7 166 36.1
EL10Ac6g14814 Beta vulgaris HOM05D007989 ORTHO05D010087 1.0e-14 84.3 133 45.9
AUR62027199 Chenopodium quinoa HOM05D007989 ORTHO05D010087 1.3e-14 84.0 126 49.2
CAN.G905.6 Capsicum annuum HOM05D007989 ORTHO05D010087 3.9e-14 82.4 155 37.4
Migut.H02322 Erythranthe guttata HOM05D007989 ORTHO05D010087 1.6e-12 77.0 131 42.7
PGR004G2401 Punica granatum HOM05D007989 ORTHO05D010087 1.4e-11 73.9 160 38.1
Sopen11g005100 Solanum pennellii HOM05D007989 ORTHO05D010087 8.9e-11 71.2 160 36.2
Solyc11g010320.1 Solanum lycopersicum HOM05D007989 ORTHO05D010087 3.4e-10 69.3 158 38.0
ClCG10G008400 Citrullus lanatus HOM05D007989 ORTHO05D010087 4.4e-10 68.9 118 43.2
CsaV3_4G009020 Cucumis sativus L. HOM05D007989 ORTHO05D010087 7.6e-10 68.2 117 41.9
PGSC0003DMG401016146 Solanum tuberosum HOM05D007989 ORTHO05D010087 7.6e-10 68.2 165 36.4
MELO3C018999.2 Cucumis melo HOM05D007989 ORTHO05D010087 1.7e-09 67.0 118 41.5
Carub.0004s2927 Capsella rubella HOM05D002476 ORTHO05D002652 3.8e-09 65.9 144 34.7
A04p34460 Brassica napus HOM05D002476 ORTHO05D002652 1.1e-08 64.3 130 39.2
BraA04t18904Z Brassica rapa HOM05D002476 ORTHO05D002652 1.1e-08 64.3 130 39.2
Aa31LG1G10610 Aethionema arabicum HOM05D002476 ORTHO05D002652 1.9e-08 63.5 120 41.7
Sc16g0000320 Simmondsia chinensis HOM05D007989 ORTHO05D010087 5.4e-08 62.0 107 39.3
AT1G01240 Arabidopsis thaliana HOM05D002476 ORTHO05D002652 1.2e-07 60.8 201 30.3
AT2G46550 Arabidopsis thaliana HOM05D002476 ORTHO05D002652 1.6e-07 60.5 125 37.6
BcaC02g12672 Brassica carinata HOM05D002476 ORTHO05D002652 1.6e-07 60.5 144 35.4
Oeu002158.1 Olea europaea HOM05D007989 ORTHO05D010087 1.6e-07 60.5 75 48.0
BcaC02g07040 Brassica carinata HOM05D002476 ORTHO05D002652 2.1e-07 60.1 116 38.8
BcaNung06659 Brassica carinata HOM05D002476 ORTHO05D002652 2.1e-07 60.1 116 38.8
BolC8t52874H Brassica oleracea HOM05D002476 ORTHO05D002652 3.5e-07 59.3 142 37.3
AL1G11220 Arabidopsis lyrata HOM05D002476 ORTHO05D002652 6.0e-07 58.5 151 35.1
Carub.0001s0097 Capsella rubella HOM05D002476 ORTHO05D002652 7.8e-07 58.2 151 35.8
A09p69030 Brassica napus HOM05D002476 ORTHO05D002652 1.3e-06 57.4 142 36.6
AL4G45980 Arabidopsis lyrata HOM05D002476 ORTHO05D002652 1.7e-06 57.0 127 35.4
BcaC02g07017 Brassica carinata HOM05D002476 ORTHO05D002652 1.7e-06 57.0 117 35.9
BolC4t28710H Brassica oleracea HOM05D002476 ORTHO05D002652 2.3e-06 56.6 119 38.7
CARHR141890 Cardamine hirsuta HOM05D002476 ORTHO05D002652 2.3e-06 56.6 130 36.2
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 3.0e-06 56.2 146 33.6
A05p01220 Brassica napus HOM05D002476 ORTHO05D002652 3.0e-06 56.2 144 34.0
BraA09t42240Z Brassica rapa HOM05D002476 ORTHO05D002652 3.0e-06 56.2 139 36.7
Sp4g28600 Schrenkiella parvula HOM05D002476 ORTHO05D002652 3.0e-06 56.2 127 35.4
CARHR001220 Cardamine hirsuta HOM05D002476 ORTHO05D002652 3.9e-06 55.8 149 31.5
Sed0027218 Sechium edule HOM05D007989 ORTHO05D010087 3.9e-06 55.8 83 48.2
C04p01370 Brassica napus HOM05D002476 ORTHO05D002652 5.1e-06 55.5 146 32.9
BraA05t19123Z Brassica rapa HOM05D002476 ORTHO05D002652 5.1e-06 55.5 124 36.3
Thhalv10001490m.g Eutrema salsugineum HOM05D002476 ORTHO05D002652 6.6e-06 55.1 124 36.3


User provided reference genes

Program Settings