Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 4365.5 2188 100.0
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 3905.5 2204 88.7
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 3847.4 2207 87.7
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 3748.0 2216 85.5
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 3367.8 2229 78.1
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 3238.7 2211 75.6
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 3190.6 2232 74.6
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 3184.4 2231 74.5
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 3158.2 2205 74.1
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 3151.7 2235 73.7
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 3150.1 2205 73.8
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 2694.5 2240 63.2
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 2682.1 2230 63.5
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 2674.0 2237 63.3
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 2638.6 2239 62.4
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 2634.8 2237 62.5
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 2622.4 2225 62.4
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2586.2 2242 61.3
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 2577.4 2242 61.2
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2572.3 2238 61.3
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 2561.6 2243 60.9
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2559.6 2241 60.5
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2550.8 2238 60.5
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 2547.7 2246 60.9
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2540.0 2240 60.6
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 2539.2 2229 60.7
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 2538.5 2243 60.6
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2523.4 2229 59.8
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 2516.9 2258 59.9
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 2503.8 2246 60.1
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2503.4 2245 59.9
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2499.9 2241 59.5
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2490.7 2244 59.7
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2480.7 2243 59.5
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 2477.6 2248 58.8
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 2476.4 2220 59.6
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 2473.4 2246 59.8
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 2466.8 2226 58.8
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 2457.2 2241 58.3
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 2416.3 2236 57.6
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 2398.6 2231 57.9
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 2396.3 2237 57.8
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 2396.3 2204 58.0
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 2384.8 2216 57.8
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2377.8 2244 57.6
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2372.8 2239 57.5
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 2365.9 2248 57.9
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 2365.1 2225 57.3
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 2352.0 2219 57.4
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 2348.2 2237 56.9
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 2347.0 2245 56.9
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 2333.1 2243 57.0
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 2323.1 2233 56.2
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 2321.2 2237 56.6
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 2314.3 2237 56.4
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 2313.5 2260 55.8
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2300.0 2228 56.8
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 2300.0 2215 56.9
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 2298.5 2249 55.9
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2296.2 2228 56.6
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 2290.4 2235 55.7
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 2289.2 2219 56.3
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 2288.8 2222 55.6
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 2287.7 2234 55.3
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2284.6 2228 56.3
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 2282.3 2219 56.5
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 2278.1 2222 56.0
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 2275.4 2248 55.5
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 2274.6 2218 55.9
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 2265.0 2218 56.0
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 2255.7 2225 55.1
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2254.9 2218 55.9
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 2254.9 2218 55.9
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 2253.8 2267 54.9
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2248.8 2217 55.7
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 2248.8 2217 55.7
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2217.6 1896 61.1
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 2205.3 1829 62.8
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 2204.1 1834 62.8
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 2193.7 1823 62.3
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 2157.9 2228 54.9
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 2136.7 2218 54.0
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 2099.3 2050 56.5
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2072.7 2320 51.1
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2037.3 1711 62.2
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 1983.8 2261 49.5
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 1970.7 2331 48.4
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 1952.9 2233 50.0
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 1766.1 2236 47.0
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1719.1 1429 64.4
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1704.1 2398 42.9
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1535.4 1119 72.2
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1530.4 1699 49.7
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1451.4 1381 57.1
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1421.8 2379 38.4
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1369.4 2376 38.1
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 0.0e+00 1312.7 2201 38.9
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1298.9 2258 37.4
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1212.2 1207 54.8
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1205.3 1029 61.2
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1122.1 950 63.6
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1080.1 1063 55.7
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 3.1e-291 1006.5 1427 42.9
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 1.2e-255 888.3 2585 29.2
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 6.3e-252 875.9 785 60.4
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 1.8e-243 847.8 1019 48.9
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 2.3e-225 787.7 858 50.5
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 3.3e-208 730.7 1354 36.8
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 2.0e-205 721.5 740 52.4
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 1.3e-164 585.9 998 39.8
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 4.3e-160 570.9 2463 25.7
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 1.0e-121 443.4 442 50.0
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 2.9e-87 328.9 383 54.0
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 1.8e-73 283.1 289 56.7
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 2.6e-72 279.3 331 48.9
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 2.0e-64 253.1 319 46.7
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 3.5e-61 242.3 751 27.7
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 1.9e-59 236.5 322 44.7
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 1.2e-56 227.3 178 67.4
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 3.4e-56 225.7 237 52.3
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 8.4e-55 221.1 139 82.7
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 8.7e-52 211.1 235 50.6
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 4.3e-43 182.2 280 41.8
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 1.3e-39 170.6 95 89.5
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 2.2e-34 153.3 227 42.3
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 1.2e-32 147.5 103 69.9
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 5.9e-32 145.2 99 74.7
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 2.9e-31 142.9 284 34.2
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 4.7e-29 135.6 107 61.7
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 1.0e-28 134.4 496 27.0
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 5.5e-22 112.1 168 41.1
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 2.7e-13 83.2 113 39.8


User provided reference genes

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