Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g061440 Pisum sativum HOM05D005144 ORTHO05D006112 1.4e-92 342.8 164 100.0
Phvul.001G105000 Phaseolus vulgaris HOM05D000353 ORTHO05D009491 6.4e-16 88.2 195 30.8
Medtr2g048560 Medicago truncatula HOM05D000353 ORTHO05D000174 8.4e-16 87.8 220 30.5
Phvul.007G143500 Phaseolus vulgaris HOM05D000353 ORTHO05D009491 8.4e-16 87.8 201 29.9
TPR.G40139 Trifolium pratense HOM05D000096 ORTHO05D000045 1.4e-15 87.0 211 30.3
Psat7g024160 Pisum sativum HOM05D005144 ORTHO05D006112 7.1e-15 84.7 37 100.0
Medtr6g445520 Medicago truncatula HOM05D000353 ORTHO05D000174 9.2e-15 84.3 81 53.1
Medtr8g099610 Medicago truncatula HOM05D005144 ORTHO05D006112 2.1e-14 83.2 37 97.3
Medtr0042s0170 Medicago truncatula HOM05D007499 ORTHO05D009491 1.0e-13 80.9 143 36.4
Ca_17470_v3 Cicer arietinum L. HOM05D005144 ORTHO05D006112 2.3e-13 79.7 37 91.9
Medtr7g032940 Medicago truncatula HOM05D010809 ORTHO05D009491 3.0e-13 79.3 90 50.0
Phvul.005G096800 Phaseolus vulgaris HOM05D000353 ORTHO05D000174 3.0e-13 79.3 198 27.8
VMungo0251G3542 Vigna mungo HOM05D005144 ORTHO05D006112 3.9e-13 79.0 37 89.2
Medtr4g036240 Medicago truncatula HOM05D000353 ORTHO05D000174 5.1e-13 78.6 214 27.1
CANSAT21G0803 Cannabis sativa HOM05D005144 ORTHO05D006112 1.1e-12 77.4 37 86.5
Phvul.002G299800 Phaseolus vulgaris HOM05D005144 ORTHO05D006112 1.5e-12 77.0 37 86.5
arahy.Tifrunner.gnm1.ann1.11VL1S Arachis hypogaea HOM05D005144 ORTHO05D006112 1.9e-12 76.6 37 89.2
arahy.Tifrunner.gnm1.ann1.72DNA3 Arachis hypogaea HOM05D005144 ORTHO05D006112 1.9e-12 76.6 37 89.2
Lalb_Chr09g0332261 Lupinus albus HOM05D005144 ORTHO05D006112 1.9e-12 76.6 37 86.5
Medtr3g056270 Medicago truncatula HOM05D000353 ORTHO05D000174 1.9e-12 76.6 199 27.1
Lalb_Chr05g0224021 Lupinus albus HOM05D005144 ORTHO05D006112 3.3e-12 75.9 37 83.8
Phvul.L003637 Phaseolus vulgaris HOM05D000353 ORTHO05D009491 3.3e-12 75.9 192 26.6
Glyma.05G217900 Glycine max HOM05D005144 ORTHO05D006112 1.2e-11 73.9 37 81.1
Cfa011983 Carpinus fangiana HOM05D005144 ORTHO05D006112 1.6e-11 73.6 39 84.6
Ciclev10021394m.g Citrus clementina HOM05D005144 ORTHO05D006112 2.1e-11 73.2 39 82.1
Phvul.006G016100 Phaseolus vulgaris HOM05D000353 ORTHO05D000174 2.1e-11 73.2 205 26.8
Phvul.010G059600 Phaseolus vulgaris HOM05D000353 ORTHO05D000174 2.8e-11 72.8 142 32.4
Haze_09089 Corylus avellana HOM05D005144 ORTHO05D006112 6.2e-11 71.6 39 82.1
Manes.01G052400 Manihot esculenta HOM05D005144 ORTHO05D006112 6.2e-11 71.6 40 82.5
TPR.G17919 Trifolium pratense HOM05D011527 ORTHO05D009491 6.2e-11 71.6 59 52.5
TPR.G35040 Trifolium pratense HOM05D011524 ORTHO05D009491 6.2e-11 71.6 59 52.5
COL.COLO4_10724 Corchorus olitorius HOM05D005144 ORTHO05D006112 8.1e-11 71.2 37 86.5
QL02p030059 Quercus lobata HOM05D005144 ORTHO05D006112 8.1e-11 71.2 37 83.8
Thecc.03G300600 Theobroma cacao HOM05D005144 ORTHO05D006112 8.1e-11 71.2 38 84.2
Lj4g0014592 Lotus japonicus HOM05D005144 ORTHO05D006112 1.1e-10 70.9 31 93.5
Atru.chr9.1926 Acer truncatum HOM05D005144 ORTHO05D006112 1.4e-10 70.5 39 82.1
Eucgr.E00882 Eucalyptus grandis HOM05D005144 ORTHO05D006112 1.8e-10 70.1 39 79.5
Glyma.08G024000 Glycine max HOM05D005144 ORTHO05D006112 1.8e-10 70.1 37 81.1
ClCG07G011500 Citrullus lanatus HOM05D005144 ORTHO05D006112 2.4e-10 69.7 39 79.5
Cc08_g16260 Coffea canephora HOM05D005144 ORTHO05D006112 2.4e-10 69.7 39 79.5
Lj3g0013474 Lotus japonicus HOM05D000353 ORTHO05D000174 2.4e-10 69.7 171 26.3
Prupe.5G122700 Prunus persica HOM05D005144 ORTHO05D006112 2.4e-10 69.7 37 78.4
CsaV3_4G006720 Cucumis sativus L. HOM05D005144 ORTHO05D006112 3.1e-10 69.3 39 76.9
Dinv37515 Davidia involucrata HOM05D005144 ORTHO05D006112 3.1e-10 69.3 39 82.1
Sabra03G0102000 Salix brachista HOM05D005144 ORTHO05D006112 5.2e-10 68.6 39 79.5
GSVIVG01019559001 Vitis vinifera HOM05D005144 ORTHO05D006112 5.2e-10 68.6 38 78.9
MD14G1130800 Malus domestica HOM05D005144 ORTHO05D006112 6.9e-10 68.2 36 80.6
Phvul.008G122133 Phaseolus vulgaris HOM05D011527 ORTHO05D009491 6.9e-10 68.2 62 50.0
Lj3g0016345 Lotus japonicus HOM05D000353 ORTHO05D000174 9.0e-10 67.8 154 28.6
MD06G1109700 Malus domestica HOM05D005144 ORTHO05D006112 9.0e-10 67.8 37 78.4
Potri.001G089600 Populus trichocarpa HOM05D005144 ORTHO05D006112 9.0e-10 67.8 39 76.9
TPR.G34060 Trifolium pratense HOM05D011527 ORTHO05D009491 9.0e-10 67.8 111 36.0
TPR.G26714 Trifolium pratense HOM05D011524 ORTHO05D009491 1.2e-09 67.4 64 45.3
Potri.003G141600 Populus trichocarpa HOM05D005144 ORTHO05D006112 1.5e-09 67.0 39 76.9
Manes.02G008400 Manihot esculenta HOM05D005144 ORTHO05D006112 2.0e-09 66.6 39 76.9
Phvul.006G191400 Phaseolus vulgaris HOM05D011527 ORTHO05D009491 2.0e-09 66.6 64 48.4
Actinidia04180 Actinidia chinensis HOM05D005144 ORTHO05D006112 2.6e-09 66.2 48 66.7
Phvul.007G129300 Phaseolus vulgaris HOM05D000353 ORTHO05D009491 2.6e-09 66.2 62 50.0
Gohir.D12G238900 Gossypium hirsutum HOM05D005144 ORTHO05D006112 3.4e-09 65.9 40 70.0
Gorai.008G256000 Gossypium raimondii HOM05D005144 ORTHO05D006112 3.4e-09 65.9 40 70.0
Nn1g00256 Nelumbo nucifera HOM05D005144 ORTHO05D006112 3.4e-09 65.9 43 69.8
vmacro11343 Vaccinium macrocarpon HOM05D005144 ORTHO05D006112 3.4e-09 65.9 46 63.0
CiPaw.12G081400 Carya illinoinensis HOM05D005144 ORTHO05D006112 4.4e-09 65.5 39 74.4
Sed0013108 Sechium edule HOM05D005144 ORTHO05D006112 4.4e-09 65.5 37 78.4
TPR.G7855 Trifolium pratense HOM05D000096 ORTHO05D000045 4.4e-09 65.5 72 41.7
arahy.Tifrunner.gnm1.ann1.CT1CGZ Arachis hypogaea HOM05D007499 ORTHO05D009491 5.8e-09 65.1 62 45.2
arahy.Tifrunner.gnm1.ann1.GFA6QK Arachis hypogaea HOM05D007499 ORTHO05D009491 5.8e-09 65.1 62 45.2
Phvul.009G015800 Phaseolus vulgaris HOM05D011527 ORTHO05D009491 5.8e-09 65.1 59 49.2
TPR.G34472 Trifolium pratense HOM05D011524 ORTHO05D009491 5.8e-09 65.1 68 41.2
Duzib084G0361 Durio zibethinus HOM05D005144 ORTHO05D006112 7.6e-09 64.7 38 71.1
Sabra01G0065800 Salix brachista HOM05D005144 ORTHO05D006112 7.6e-09 64.7 39 74.4
TPR.G20476 Trifolium pratense HOM05D011524 ORTHO05D009491 7.6e-09 64.7 68 39.7
TPR.G36881 Trifolium pratense HOM05D011524 ORTHO05D009491 7.6e-09 64.7 59 45.8
TWI60G1459 Tripterygium wilfordii HOM05D005144 ORTHO05D006112 7.6e-09 64.7 39 76.9
Medtr2g008650 Medicago truncatula HOM05D000353 ORTHO05D000174 9.9e-09 64.3 225 21.3
Medtr8g479260 Medicago truncatula HOM05D000353 ORTHO05D000174 9.9e-09 64.3 225 21.3
TWI15G0686 Tripterygium wilfordii HOM05D005144 ORTHO05D006112 1.3e-08 63.9 39 74.4
CSS0010562 Camellia sinensis var. sinensis HOM05D005144 ORTHO05D006112 1.7e-08 63.5 39 76.9
CSS0049427 Camellia sinensis var. sinensis HOM05D005144 ORTHO05D006112 1.7e-08 63.5 39 76.9
TPR.G19823 Trifolium pratense HOM05D011527 ORTHO05D009491 1.7e-08 63.5 59 47.5
TPR.G8670 Trifolium pratense HOM05D007499 ORTHO05D009491 1.7e-08 63.5 93 39.8
arahy.Tifrunner.gnm1.ann1.IYP2GG Arachis hypogaea HOM05D000353 ORTHO05D000174 2.2e-08 63.2 199 26.1
Cpa.g.sc634.1 Carica papaya HOM05D005144 ORTHO05D006112 2.2e-08 63.2 36 77.8
TPR.G30051 Trifolium pratense HOM05D000023 ORTHO05D009491 2.2e-08 63.2 111 35.1
TPR.G3399 Trifolium pratense HOM05D005144 ORTHO05D006112 2.2e-08 63.2 39 71.8
Gohir.A12G237800 Gossypium hirsutum HOM05D005144 ORTHO05D006112 2.9e-08 62.8 40 67.5
arahy.Tifrunner.gnm1.ann1.Y6YSHD Arachis hypogaea HOM05D000353 ORTHO05D000174 3.8e-08 62.4 199 25.6
CiPaw.11G119100 Carya illinoinensis HOM05D005144 ORTHO05D006112 3.8e-08 62.4 46 67.4
AUR62010862 Chenopodium quinoa HOM05D005144 ORTHO05D006112 3.8e-08 62.4 48 66.7
AUR62019860 Chenopodium quinoa HOM05D002356 ORTHO05D006112 3.8e-08 62.4 48 66.7
Rhsim07G0081500 Rhododendron simsii HOM05D005144 ORTHO05D006112 3.8e-08 62.4 41 68.3
arahy.Tifrunner.gnm1.ann1.CPRZ31 Arachis hypogaea HOM05D000353 ORTHO05D000174 4.9e-08 62.0 199 25.6
EL10Ac5g12937 Beta vulgaris HOM05D005144 ORTHO05D006112 4.9e-08 62.0 39 71.8
Nitab4.5_0008496g0030 Nicotiana tabacum HOM05D005144 ORTHO05D006112 4.9e-08 62.0 37 75.7
arahy.Tifrunner.gnm1.ann1.J9NJUF Arachis hypogaea HOM05D000353 ORTHO05D000174 6.4e-08 61.6 199 25.6
arahy.Tifrunner.gnm1.ann1.LSFF47 Arachis hypogaea HOM05D000353 ORTHO05D000174 6.4e-08 61.6 199 25.6
MELO3C016277.2 Cucumis melo HOM05D005144 ORTHO05D006112 6.4e-08 61.6 35 74.3
Hma1.2p1_0440F.1_g153460 Hydrangea macrophylla HOM05D005144 ORTHO05D006112 6.4e-08 61.6 41 68.3
TAR374G1437 Trochodendron aralioides HOM05D005144 ORTHO05D006112 6.4e-08 61.6 39 71.8
Gohir.A09G189800 Gossypium hirsutum HOM05D005144 ORTHO05D006112 8.4e-08 61.2 38 68.4
arahy.Tifrunner.gnm1.ann1.AKH4BK Arachis hypogaea HOM05D000353 ORTHO05D000174 1.1e-07 60.8 199 25.6
Phvul.003G117700 Phaseolus vulgaris HOM05D011527 ORTHO05D009491 1.1e-07 60.8 72 41.7
Phvul.005G044800 Phaseolus vulgaris HOM05D011527 ORTHO05D009491 1.1e-07 60.8 50 52.0
TAR375G0238 Trochodendron aralioides HOM05D005144 ORTHO05D006112 1.1e-07 60.8 39 69.2
AL6G45020 Arabidopsis lyrata HOM05D005144 ORTHO05D006112 1.4e-07 60.5 35 71.4
AT4G10925 Arabidopsis thaliana HOM05D005144 ORTHO05D006112 1.4e-07 60.5 35 71.4
Carub.0006s2967 Capsella rubella HOM05D005144 ORTHO05D006112 1.4e-07 60.5 35 71.4
Glyma.05G083400 Glycine max HOM05D000353 ORTHO05D000174 1.9e-07 60.1 156 31.4
PGR042G3213 Punica granatum HOM05D005144 ORTHO05D006112 1.9e-07 60.1 40 75.0
vmacro13890 Vaccinium macrocarpon HOM05D005144 ORTHO05D006112 1.9e-07 60.1 41 61.0
FvH4_5g04920 Fragaria vesca HOM05D005144 ORTHO05D006112 2.4e-07 59.7 32 78.1
FAN04G3040 Fragaria x ananassa HOM05D005144 ORTHO05D006112 2.4e-07 59.7 32 78.1
FAN13G1564 Fragaria x ananassa HOM05D005144 ORTHO05D006112 2.4e-07 59.7 32 78.1
FAN18G2696 Fragaria x ananassa HOM05D005144 ORTHO05D006112 2.4e-07 59.7 32 78.1
Gohir.D09G184500 Gossypium hirsutum HOM05D005144 ORTHO05D006112 2.4e-07 59.7 38 68.4
Gorai.006G207000 Gossypium raimondii HOM05D005144 ORTHO05D006112 2.4e-07 59.7 38 68.4
MBI07_g40676_MAGBIO Magnolia biondii HOM05D005144 ORTHO05D006112 2.4e-07 59.7 39 69.2
RcHm_v2.0_Chr7g0194161 Rosa chinensis HOM05D005144 ORTHO05D006112 2.4e-07 59.7 32 78.1
Lj2g0011029 Lotus japonicus HOM05D000353 ORTHO05D000174 3.2e-07 59.3 117 33.3
Phvul.001G109800 Phaseolus vulgaris HOM05D000353 ORTHO05D000174 3.2e-07 59.3 206 28.6
Ah.12g052690 Amaranthus hybridus HOM05D005144 ORTHO05D006112 4.2e-07 58.9 48 62.5
CAN.G567.13 Capsicum annuum HOM05D005144 ORTHO05D006112 4.2e-07 58.9 37 73.0
CARHR255680 Cardamine hirsuta HOM05D005144 ORTHO05D006112 4.2e-07 58.9 35 74.3
DCAR_006524 Daucus carota HOM05D005144 ORTHO05D006112 4.2e-07 58.9 34 76.5
Medtr2g048550 Medicago truncatula HOM05D000353 ORTHO05D000174 4.2e-07 58.9 58 41.4
Nitab4.5_0000798g0100 Nicotiana tabacum HOM05D005144 ORTHO05D006112 4.2e-07 58.9 37 73.0
Phvul.005G095200 Phaseolus vulgaris HOM05D000353 ORTHO05D000174 4.2e-07 58.9 172 25.6
THA.LOC104815124 Tarenaya hassleriana HOM05D005144 ORTHO05D006112 4.2e-07 58.9 35 74.3
Lj6g0022193 Lotus japonicus HOM05D010643 ORTHO05D013332 5.4e-07 58.5 69 40.6
Thhalv10028928m.g Eutrema salsugineum HOM05D005144 ORTHO05D006112 7.1e-07 58.2 34 76.5
FAN18G1164 Fragaria x ananassa HOM05D005144 ORTHO05D006112 7.1e-07 58.2 32 78.1
MSTRG.1800 Avicennia marina HOM05D005144 ORTHO05D006112 9.3e-07 57.8 27 81.5
Ca_18497_v3 Cicer arietinum L. HOM05D048157 ORTHO05D044361 9.3e-07 57.8 76 42.1
Migut.A00621 Erythranthe guttata HOM05D005144 ORTHO05D006112 9.3e-07 57.8 44 59.1
Hma1.2p1_0359F.1_g135130 Hydrangea macrophylla HOM05D005144 ORTHO05D006112 9.3e-07 57.8 31 83.9
Lj1g0004030 Lotus japonicus HOM05D000353 ORTHO05D000174 9.3e-07 57.8 62 40.3
Gohir.A02G099500 Gossypium hirsutum HOM05D005144 ORTHO05D006112 1.2e-06 57.4 36 66.7
Lj6g0004966 Lotus japonicus HOM05D011527 ORTHO05D009491 1.2e-06 57.4 65 43.1
Gorai.003G078400 Gossypium raimondii HOM05D005144 ORTHO05D006112 1.6e-06 57.0 36 66.7
Hund14208 Selenicereus undatus HOM05D005144 ORTHO05D006112 1.6e-06 57.0 33 75.8
BcaB01g01559 Brassica carinata HOM05D005144 ORTHO05D006112 2.1e-06 56.6 35 71.4
Duzib068G1441 Durio zibethinus HOM05D005144 ORTHO05D006112 2.1e-06 56.6 32 71.9
Sp6g06570 Schrenkiella parvula HOM05D005144 ORTHO05D006112 2.1e-06 56.6 35 71.4
Lsat_1_v5_gn_3_11240 Lactuca sativa HOM05D005144 ORTHO05D006112 2.7e-06 56.2 30 73.3
TPR.G7354 Trifolium pratense HOM05D000353 ORTHO05D000174 2.7e-06 56.2 64 42.2
Medtr8g062030 Medicago truncatula HOM05D000353 ORTHO05D000174 3.5e-06 55.8 58 46.6
THA.LOC104813044 Tarenaya hassleriana HOM05D005144 ORTHO05D006112 3.5e-06 55.8 35 68.6
TPR.G15524 Trifolium pratense HOM05D007499 ORTHO05D009491 4.6e-06 55.5 83 33.7
TPR.G16855 Trifolium pratense HOM05D007499 ORTHO05D009491 4.6e-06 55.5 58 39.7
TPR.G39727 Trifolium pratense HOM05D028938 ORTHO05D009491 4.6e-06 55.5 58 46.6
BcaC04g21088 Brassica carinata HOM05D005144 ORTHO05D006112 6.0e-06 55.1 35 71.4
A09p28270 Brassica napus HOM05D005144 ORTHO05D006112 6.0e-06 55.1 35 71.4
C09p35830 Brassica napus HOM05D005144 ORTHO05D006112 6.0e-06 55.1 35 71.4
BolC9t56417H Brassica oleracea HOM05D005144 ORTHO05D006112 6.0e-06 55.1 35 71.4
BraA09t38396Z Brassica rapa HOM05D005144 ORTHO05D006112 6.0e-06 55.1 35 71.4
CARHR125070 Cardamine hirsuta HOM05D005144 ORTHO05D006112 6.0e-06 55.1 44 56.8
Gohir.D03G084200 Gossypium hirsutum HOM05D005144 ORTHO05D006112 6.0e-06 55.1 36 63.9
TPR.G30682 Trifolium pratense HOM05D000096 ORTHO05D000045 7.8e-06 54.7 55 43.6


User provided reference genes

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