Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g060960 Pisum sativum HOM05D002378 ORTHO05D021942 3.7e-85 318.2 160 100.0
TPR.G25085 Trifolium pratense HOM05D002378 ORTHO05D002936 5.2e-55 218.0 145 82.8
Ca_26252_v3 Cicer arietinum L. HOM05D002378 ORTHO05D002936 4.4e-54 214.9 145 80.0
Medtr6g017100 Medicago truncatula HOM05D002378 ORTHO05D002936 3.9e-50 201.8 154 74.0
arahy.Tifrunner.gnm1.ann1.AT7X8X Arachis hypogaea HOM05D002378 ORTHO05D002936 2.8e-40 169.1 160 65.0
Lj2g0001107 Lotus japonicus HOM05D002378 ORTHO05D002936 2.8e-40 169.1 143 65.0
arahy.Tifrunner.gnm1.ann1.X6Y4TE Arachis hypogaea HOM05D002378 ORTHO05D002936 1.8e-39 166.4 160 64.4
Glyma.13G047500 Glycine max HOM05D002378 ORTHO05D002936 2.1e-35 152.9 161 60.9
Glyma.19G044300 Glycine max HOM05D002378 ORTHO05D002936 1.5e-33 146.7 154 59.7
VMungo0464G0222 Vigna mungo HOM05D002378 ORTHO05D023460 1.4e-31 140.2 149 63.1
Phvul.004G072200 Phaseolus vulgaris HOM05D002378 ORTHO05D002936 1.7e-29 133.3 150 60.0
Lalb_Chr21g0317951 Lupinus albus HOM05D002378 ORTHO05D002936 2.9e-29 132.5 141 57.4
Phvul.008G020500 Phaseolus vulgaris HOM05D002378 ORTHO05D002936 1.3e-24 117.1 145 58.6
Cfa007954 Carpinus fangiana HOM05D002378 ORTHO05D002936 4.0e-23 112.1 156 53.2
Haze_14121 Corylus avellana HOM05D002378 ORTHO05D002936 7.6e-22 107.8 155 51.6
VMungo1383G1609 Vigna mungo HOM05D002378 ORTHO05D002936 1.3e-21 107.1 156 50.0
Haze_14115 Corylus avellana HOM05D002378 ORTHO05D002936 2.2e-21 106.3 155 51.0
Glyma.18G280600 Glycine max HOM05D002378 ORTHO05D002936 2.2e-21 106.3 143 53.8
CiPaw.03G058900 Carya illinoinensis HOM05D002378 ORTHO05D002936 1.1e-20 104.0 161 49.7
Lalb_Chr02g0158351 Lupinus albus HOM05D002378 ORTHO05D002936 2.5e-20 102.8 143 46.9
PGR083G2054 Punica granatum HOM05D002378 ORTHO05D002936 1.2e-19 100.5 159 49.1
MSTRG.23823 Avicennia marina HOM05D002378 ORTHO05D002936 3.5e-19 99.0 146 49.3
Cc07_g05060 Coffea canephora HOM05D002378 ORTHO05D002936 3.5e-19 99.0 148 48.6
arahy.Tifrunner.gnm1.ann1.Q4MAQ8 Arachis hypogaea HOM05D002378 ORTHO05D002936 4.6e-19 98.6 158 48.7
Ca_26147_v3 Cicer arietinum L. HOM05D002378 ORTHO05D002936 4.6e-19 98.6 146 46.6
SalBow1G2456 Salvia bowleyana HOM05D002378 ORTHO05D002936 3.9e-18 95.5 149 46.3
arahy.Tifrunner.gnm1.ann1.GUVP28 Arachis hypogaea HOM05D002378 ORTHO05D002936 5.1e-18 95.1 158 48.1
CSS0027164 Camellia sinensis var. sinensis HOM05D002378 ORTHO05D002936 1.3e-16 90.5 154 44.8
CSS0031813 Camellia sinensis var. sinensis HOM05D002378 ORTHO05D002936 1.3e-16 90.5 154 44.8
Manes.02G066200 Manihot esculenta HOM05D002378 ORTHO05D002936 1.3e-16 90.5 144 49.3
Eucgr.B00690 Eucalyptus grandis HOM05D002378 ORTHO05D002936 2.8e-16 89.4 161 47.2
MBI16_g23769_MAGBIO Magnolia biondii HOM05D002378 ORTHO05D002936 8.2e-16 87.8 150 47.3
Psat3g019920 Pisum sativum HOM05D002270 ORTHO05D002866 8.2e-16 87.8 87 60.9
TAR629G0462 Trochodendron aralioides HOM05D002378 ORTHO05D002936 1.1e-15 87.4 155 44.5
unitig_62.g23398 Utricularia gibba HOM05D002378 ORTHO05D002936 1.8e-15 86.7 147 44.2
Dinv34855 Davidia involucrata HOM05D002378 ORTHO05D002936 2.4e-15 86.3 149 49.0
Hma1.2p1_0550F.1_g177190 Hydrangea macrophylla HOM05D002378 ORTHO05D002936 2.4e-15 86.3 143 48.3
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 5.3e-15 85.1 44 93.2
TWI81G0305 Tripterygium wilfordii HOM05D002378 ORTHO05D002936 1.2e-14 84.0 150 44.0
Prupe.5G216300 Prunus persica HOM05D002378 ORTHO05D002936 1.5e-14 83.6 155 41.3
Duzib084G0818 Durio zibethinus HOM05D002378 ORTHO05D002936 2.6e-14 82.8 154 43.5
Hma1.2p1_0340F.1_g129970 Hydrangea macrophylla HOM05D002378 ORTHO05D002936 3.4e-14 82.4 161 42.9
Nn3g17690 Nelumbo nucifera HOM05D002378 ORTHO05D002936 3.4e-14 82.4 160 42.5
TWI15G1079 Tripterygium wilfordii HOM05D002378 ORTHO05D002936 4.5e-14 82.0 150 44.0
Atru.chr9.739 Acer truncatum HOM05D002378 ORTHO05D002936 1.3e-13 80.5 144 46.5
Thecc.03G027400 Theobroma cacao HOM05D002378 ORTHO05D002936 1.3e-13 80.5 156 41.7
Medtr7g018590 Medicago truncatula HOM05D002378 ORTHO05D002936 1.7e-13 80.1 135 45.9
TAR371G0108 Trochodendron aralioides HOM05D002378 ORTHO05D002936 2.9e-13 79.3 160 43.8
Oeu033431.1 Olea europaea HOM05D002378 ORTHO05D002936 4.9e-13 78.6 143 45.5
Migut.H00530 Erythranthe guttata HOM05D002378 ORTHO05D002936 6.5e-13 78.2 112 50.0
Migut.K00860 Erythranthe guttata HOM05D002378 ORTHO05D002936 8.4e-13 77.8 152 42.8
FAN18G2445 Fragaria x ananassa HOM05D002378 ORTHO05D002936 8.4e-13 77.8 160 39.4
Dinv38595 Davidia involucrata HOM05D002378 ORTHO05D002936 1.1e-12 77.4 163 43.6
HanXRQChr05g0157741 Helianthus annuus HOM05D002378 ORTHO05D002936 1.1e-12 77.4 148 43.9
MD06G1210100 Malus domestica HOM05D002378 ORTHO05D002936 1.1e-12 77.4 153 42.5
Manes.05G118200 Manihot esculenta HOM05D002378 ORTHO05D002936 1.1e-12 77.4 158 46.2
Nn4g23696 Nelumbo nucifera HOM05D002378 ORTHO05D002936 1.1e-12 77.4 163 42.9
Ah.16g102060 Amaranthus hybridus HOM05D002378 ORTHO05D002936 1.4e-12 77.0 166 42.2
MSTRG.15418 Avicennia marina HOM05D002378 ORTHO05D002936 1.9e-12 76.6 146 42.5
COL.COLO4_22702 Corchorus olitorius HOM05D002378 ORTHO05D002936 1.9e-12 76.6 150 42.0
Lsat_1_v5_gn_5_24260 Lactuca sativa HOM05D002378 ORTHO05D002936 1.9e-12 76.6 124 45.2
Nitab4.5_0009272g0020 Nicotiana tabacum HOM05D002378 ORTHO05D002936 1.9e-12 76.6 148 44.6
RcHm_v2.0_Chr7g0184441 Rosa chinensis HOM05D002378 ORTHO05D002936 1.9e-12 76.6 159 42.1
GSVIVG01008226001 Vitis vinifera HOM05D002378 ORTHO05D002936 1.9e-12 76.6 152 44.7
Actinidia35073 Actinidia chinensis HOM05D002378 ORTHO05D002936 2.5e-12 76.3 167 44.3
PGSC0003DMG401010047 Solanum tuberosum HOM05D002378 ORTHO05D002936 2.5e-12 76.3 147 42.9
EL10Ac2g04613 Beta vulgaris HOM05D002378 ORTHO05D002936 3.2e-12 75.9 159 43.4
MD14G1221000 Malus domestica HOM05D002378 ORTHO05D002936 3.2e-12 75.9 155 43.2
FvH4_5g12800 Fragaria vesca HOM05D002378 ORTHO05D002936 4.2e-12 75.5 160 38.8
FAN18G2406 Fragaria x ananassa HOM05D002378 ORTHO05D002936 4.2e-12 75.5 160 38.8
MD17G1073400 Malus domestica HOM05D002378 ORTHO05D002936 4.2e-12 75.5 152 41.4
Potri.012G059300 Populus trichocarpa HOM05D002378 ORTHO05D002936 4.2e-12 75.5 160 43.8
Cpa.g.sc13.58 Carica papaya HOM05D002378 ORTHO05D002936 5.5e-12 75.1 144 43.1
Duzib068G0447 Durio zibethinus HOM05D002378 ORTHO05D002936 5.5e-12 75.1 148 41.2
Potri.004G103700 Populus trichocarpa HOM05D002378 ORTHO05D002936 7.1e-12 74.7 151 45.0
Oeu049328.2 Olea europaea HOM05D002378 ORTHO05D002936 9.3e-12 74.3 103 50.5
ECA246G5105 Erigeron canadensis HOM05D002378 ORTHO05D002936 1.6e-11 73.6 119 45.4
FAN08G3159 Fragaria x ananassa HOM05D002378 ORTHO05D002936 1.6e-11 73.6 156 41.0
Lj5A141T92 Lonicera japonica HOM05D002378 ORTHO05D002936 1.6e-11 73.6 144 44.4
Eucgr.I02131 Eucalyptus grandis HOM05D002378 ORTHO05D002936 2.7e-11 72.8 91 51.6
Lsat_1_v5_gn_8_115661 Lactuca sativa HOM05D002378 ORTHO05D002936 3.5e-11 72.4 152 42.1
Sabra04G0077700 Salix brachista HOM05D002378 ORTHO05D002936 3.5e-11 72.4 151 44.4
SGA_v2.0_scaffold204G41650 Striga asiatica HOM05D002378 ORTHO05D002936 4.6e-11 72.0 94 48.9
Oeu025116.2 Olea europaea HOM05D002378 ORTHO05D002936 6.1e-11 71.6 142 42.3
Rhsim12G0144900 Rhododendron simsii HOM05D002378 ORTHO05D002936 6.1e-11 71.6 169 40.2
Gorai.006G063500 Gossypium raimondii HOM05D002378 ORTHO05D002936 7.9e-11 71.2 138 40.6
PGR004G1585 Punica granatum HOM05D002378 ORTHO05D002936 7.9e-11 71.2 146 43.2
Thecc.04G139000 Theobroma cacao HOM05D002378 ORTHO05D002936 7.9e-11 71.2 145 42.8
DCAR_021426 Daucus carota HOM05D002378 ORTHO05D002936 1.0e-10 70.9 144 41.0
Gohir.D09G046600 Gossypium hirsutum HOM05D002378 ORTHO05D002936 1.0e-10 70.9 140 41.4
CSS0029737 Camellia sinensis var. sinensis HOM05D002378 ORTHO05D002936 1.3e-10 70.5 162 45.7
TPR.G4565 Trifolium pratense HOM05D002378 ORTHO05D002936 1.3e-10 70.5 147 38.1
ClCG06G015080 Citrullus lanatus HOM05D002378 ORTHO05D002936 1.8e-10 70.1 104 47.1
Sed0001506 Sechium edule HOM05D002378 ORTHO05D002936 1.8e-10 70.1 155 41.9
CANSAT80G1104 Cannabis sativa HOM05D002378 ORTHO05D002936 2.3e-10 69.7 156 41.7
MELO3C017281.2 Cucumis melo HOM05D002378 ORTHO05D002936 2.3e-10 69.7 146 42.5
CsaV3_1G003560 Cucumis sativus L. HOM05D002378 ORTHO05D002936 3.0e-10 69.3 146 42.5
Gohir.A09G044900 Gossypium hirsutum HOM05D002378 ORTHO05D002936 3.0e-10 69.3 139 39.6
Solyc02g089810.3 Solanum lycopersicum HOM05D002378 ORTHO05D002936 3.0e-10 69.3 154 40.3
Ciclev10011249m.g Citrus clementina HOM05D002378 ORTHO05D002936 3.9e-10 68.9 81 56.8
CsaV3_1G003550 Cucumis sativus L. HOM05D002378 ORTHO05D002936 3.9e-10 68.9 138 42.0
Hund16116 Selenicereus undatus HOM05D002378 ORTHO05D002936 3.9e-10 68.9 159 41.5
Ah.10g037500 Amaranthus hybridus HOM05D002378 ORTHO05D002936 6.7e-10 68.2 170 39.4
Psat3g191320 Pisum sativum HOM05D002378 ORTHO05D002936 6.7e-10 68.2 136 41.2
QL02p052949 Quercus lobata HOM05D002378 ORTHO05D002936 8.7e-10 67.8 112 49.1
PSO017G6834 Papaver somniferum HOM05D002378 ORTHO05D002936 1.1e-09 67.4 64 59.4
PSO478G4524 Papaver somniferum HOM05D002378 ORTHO05D002936 1.1e-09 67.4 64 59.4
Prupe.3G240400 Prunus persica HOM05D002378 ORTHO05D002936 1.1e-09 67.4 152 40.8
Sopen02g034500 Solanum pennellii HOM05D002378 ORTHO05D002936 1.1e-09 67.4 142 40.8
TWI74G0601 Tripterygium wilfordii HOM05D002378 ORTHO05D002936 1.1e-09 67.4 140 40.0
Cpa.g.sc818.2 Carica papaya HOM05D002378 ORTHO05D002936 1.5e-09 67.0 138 42.8
A08p04270 Brassica napus HOM05D002378 ORTHO05D002936 1.9e-09 66.6 155 38.7
C08p04540 Brassica napus HOM05D002378 ORTHO05D002936 1.9e-09 66.6 155 38.7
BolC8t47258H Brassica oleracea HOM05D002378 ORTHO05D002936 1.9e-09 66.6 155 38.7
BraA08t32454Z Brassica rapa HOM05D002378 ORTHO05D002936 1.9e-09 66.6 155 38.7
AUR62008960 Chenopodium quinoa HOM05D002378 ORTHO05D002936 1.9e-09 66.6 159 40.9
COL.COLO4_16199 Corchorus olitorius HOM05D002378 ORTHO05D002936 3.3e-09 65.9 119 42.0
Gohir.D08G047300 Gossypium hirsutum HOM05D002378 ORTHO05D002936 3.3e-09 65.9 112 42.9
HanXRQChr15g0486631 Helianthus annuus HOM05D002378 ORTHO05D002936 3.3e-09 65.9 150 41.3
Sabra12G0040600 Salix brachista HOM05D002378 ORTHO05D002936 3.3e-09 65.9 160 41.2
AUR62014543 Chenopodium quinoa HOM05D002378 ORTHO05D002936 4.3e-09 65.5 153 41.2
CDE02G2012 Ceratophyllum demersum HOM05D002378 ORTHO05D002936 5.7e-09 65.1 77 50.6
DCAR_011340 Daucus carota HOM05D002378 ORTHO05D002936 5.7e-09 65.1 155 40.6
BcaB04g17375 Brassica carinata HOM05D002378 ORTHO05D002936 7.4e-09 64.7 145 36.6
BcaC07g37090 Brassica carinata HOM05D002378 ORTHO05D002936 7.4e-09 64.7 155 38.1
MELO3C017280.2 Cucumis melo HOM05D002378 ORTHO05D002936 7.4e-09 64.7 138 41.3
Actinidia26290 Actinidia chinensis HOM05D002378 ORTHO05D002936 9.7e-09 64.3 139 41.0
Thhalv10011298m.g Eutrema salsugineum HOM05D002378 ORTHO05D002936 9.7e-09 64.3 148 39.9
TAR371G0705 Trochodendron aralioides HOM05D002378 ORTHO05D023460 9.7e-09 64.3 69 58.0
SGA_v2.0_scaffold150G36625 Striga asiatica HOM05D002378 ORTHO05D002936 1.6e-08 63.5 151 38.4
ClCG06G015090 Citrullus lanatus HOM05D002378 ORTHO05D002936 2.2e-08 63.2 138 39.9
CARHR038980 Cardamine hirsuta HOM05D002378 ORTHO05D002936 2.8e-08 62.8 147 38.8
Ca_25197_v3 Cicer arietinum L. HOM05D002378 ORTHO05D002936 3.7e-08 62.4 153 39.9
Sc11g0008140 Simmondsia chinensis HOM05D002378 ORTHO05D002936 3.7e-08 62.4 143 35.7
SGA_v2.0_scaffold10G05138 Striga asiatica HOM05D002378 ORTHO05D002936 4.8e-08 62.0 105 41.9
Ciclev10019126m.g Citrus clementina HOM05D002378 ORTHO05D002936 8.2e-08 61.2 154 39.6
Psat1g025720 Pisum sativum HOM05D002378 ORTHO05D002936 1.1e-07 60.8 158 39.2
BcaB02g07999 Brassica carinata HOM05D002378 ORTHO05D002936 1.4e-07 60.5 147 39.5
CDE01G0476 Ceratophyllum demersum HOM05D002378 ORTHO05D002936 1.4e-07 60.5 87 43.7
TWI77G0650 Tripterygium wilfordii HOM05D002378 ORTHO05D002936 1.4e-07 60.5 141 34.8
Thhalv10027687m.g Eutrema salsugineum HOM05D002378 ORTHO05D002936 1.8e-07 60.1 135 42.2
RcHm_v2.0_Chr2g0163261 Rosa chinensis HOM05D002378 ORTHO05D002936 1.8e-07 60.1 149 38.9
AL1G55800 Arabidopsis lyrata HOM05D002378 ORTHO05D002936 2.4e-07 59.7 148 37.2
Gorai.004G046500 Gossypium raimondii HOM05D002378 ORTHO05D002936 3.1e-07 59.3 112 41.1
AT1G48970 Arabidopsis thaliana HOM05D002378 ORTHO05D002936 5.3e-07 58.5 149 36.2
THA.LOC104805553 Tarenaya hassleriana HOM05D002378 ORTHO05D002936 5.3e-07 58.5 154 37.7
FAN05G2971 Fragaria x ananassa HOM05D002378 ORTHO05D002936 6.9e-07 58.2 140 40.7
Lj9A432T68 Lonicera japonica HOM05D002378 ORTHO05D002936 6.9e-07 58.2 154 38.3
Sp1g35880 Schrenkiella parvula HOM05D002378 ORTHO05D002936 6.9e-07 58.2 149 37.6
Aa31LG10G4960 Aethionema arabicum HOM05D002378 ORTHO05D002936 9.0e-07 57.8 149 38.9
Carub.0001s3814 Capsella rubella HOM05D002378 ORTHO05D002936 9.0e-07 57.8 154 37.0
FAN09G2739 Fragaria x ananassa HOM05D002378 ORTHO05D002936 9.0e-07 57.8 150 38.7
unitig_899.g15129 Utricularia gibba HOM05D002378 ORTHO05D002936 1.5e-06 57.0 149 36.2
CANSAT64G0412 Cannabis sativa HOM05D002378 ORTHO05D002936 2.6e-06 56.2 161 37.3
SGA_v2.0_scaffold62G21546 Striga asiatica HOM05D002378 ORTHO05D002936 3.4e-06 55.8 108 40.7
Aqoxy3G03892 Aquilegia oxysepala HOM05D002378 ORTHO05D002936 4.5e-06 55.5 147 38.8
BcaC09g49272 Brassica carinata HOM05D002378 ORTHO05D021942 4.5e-06 55.5 84 47.6
CiPaw.15G125400 Carya illinoinensis HOM05D002378 ORTHO05D002936 5.9e-06 55.1 124 41.9
vmacro18104 Vaccinium macrocarpon HOM05D002378 ORTHO05D002936 7.7e-06 54.7 143 39.2
Cfa019834 Carpinus fangiana HOM05D002378 ORTHO05D002936 1.0e-05 54.3 109 44.0
FvH4_6g45430 Fragaria vesca HOM05D002378 ORTHO05D002936 1.0e-05 54.3 149 37.6
FAN14G4540 Fragaria x ananassa HOM05D002378 ORTHO05D002936 1.0e-05 54.3 149 37.6


User provided reference genes

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