Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 2.8e-150 535.4 299 100.0
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 3.4e-116 422.2 333 76.0
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 4.2e-114 415.2 338 74.3
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 5.1e-112 408.3 349 72.8
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 6.2e-110 401.4 333 73.3
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 1.2e-105 387.1 333 67.3
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 1.0e-99 367.5 338 67.8
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.9e-98 363.2 339 66.7
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 4.2e-98 362.1 338 62.4
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 1.2e-97 360.5 338 62.1
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 3.9e-96 355.5 336 66.4
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 5.1e-96 355.1 338 65.4
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 1.0e-91 340.9 332 65.1
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 7.9e-89 331.3 337 58.5
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 6.7e-88 328.2 335 56.1
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 5.7e-87 325.1 335 55.2
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 5.7e-87 325.1 331 58.6
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 7.4e-87 324.7 332 54.8
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.7e-86 323.6 332 55.4
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 6.3e-86 321.6 337 54.0
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 8.2e-86 321.2 334 57.8
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 4.1e-85 318.9 334 58.7
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 4.1e-85 318.9 337 58.2
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 5.3e-85 318.5 336 56.2
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 6.9e-85 318.2 341 53.7
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.2e-84 317.4 332 56.3
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 5.9e-84 315.1 336 55.1
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 5.9e-84 315.1 336 54.8
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 1.0e-83 314.3 336 51.8
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 1.3e-83 313.9 334 53.0
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 3.8e-83 312.4 336 54.2
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.1e-82 310.8 340 57.4
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 2.5e-82 309.7 325 54.5
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 7.2e-82 308.1 337 54.0
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 1.2e-81 307.4 338 54.1
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 1.2e-81 307.4 332 52.4
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.6e-81 305.8 334 56.0
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 3.6e-81 305.8 334 56.0
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 4.7e-81 305.4 336 53.3
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 4.7e-81 305.4 335 57.0
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 6.1e-81 305.1 333 53.5
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 7.9e-81 304.7 334 55.1
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 2.3e-80 303.1 337 52.5
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.0e-80 302.8 334 55.7
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 5.1e-80 302.0 337 53.1
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 6.7e-80 301.6 340 56.5
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 6.7e-80 301.6 333 52.9
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 6.7e-80 301.6 333 53.2
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.0e-79 300.1 330 53.6
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 2.0e-79 300.1 333 52.9
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 4.4e-79 298.9 336 53.3
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 9.7e-79 297.7 333 52.9
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 2.2e-78 296.6 331 50.5
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 2.8e-78 296.2 332 53.3
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 3.7e-78 295.8 335 52.5
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 6.3e-78 295.0 342 51.2
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 8.2e-78 294.7 331 54.1
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.4e-77 293.1 336 50.0
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 3.1e-77 292.7 329 51.7
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 5.3e-77 292.0 333 56.2
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 7.0e-77 291.6 321 52.3
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 2.0e-76 290.0 334 51.8
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 2.0e-76 290.0 337 50.4
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 2.0e-76 290.0 331 48.6
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 2.6e-76 289.7 334 51.5
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 4.5e-76 288.9 327 52.9
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 1.0e-75 287.7 321 51.7
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 1.0e-75 287.7 336 49.7
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.9e-75 286.2 275 56.7
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 2.9e-75 286.2 333 48.0
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 3.8e-75 285.8 328 50.9
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 3.8e-75 285.8 388 49.5
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 5.0e-75 285.4 337 49.9
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 6.5e-75 285.0 336 50.0
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 8.5e-75 284.6 282 56.0
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 1.4e-74 283.9 338 50.9
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 2.5e-74 283.1 333 53.2
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 3.2e-74 282.7 335 49.6
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 3.2e-74 282.7 333 48.3
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 5.5e-74 282.0 336 47.6
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 5.5e-74 282.0 336 47.6
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 5.5e-74 282.0 342 48.8
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 8.0e-73 278.1 342 48.8
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 8.0e-73 278.1 342 48.8
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 8.0e-73 278.1 342 48.8
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 1.0e-72 277.7 334 47.0
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.4e-72 277.3 329 48.6
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 3.9e-72 275.8 285 54.0
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 6.7e-72 275.0 341 48.7
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 2.0e-71 273.5 334 49.4
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 9.7e-71 271.2 338 47.6
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 1.4e-69 267.3 333 47.7
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 1.2e-68 264.2 374 47.3
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 2.0e-68 263.5 343 47.8
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 1.3e-67 260.8 341 47.5
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 2.2e-67 260.0 340 46.5
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 2.2e-67 260.0 337 47.8
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 2.9e-67 259.6 341 46.6
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 2.9e-67 259.6 341 46.6
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 5.0e-67 258.8 340 45.9
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 5.0e-67 258.8 365 47.4
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 6.5e-67 258.5 380 45.8
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 4.2e-66 255.8 339 45.4
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 4.2e-66 255.8 337 47.8
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 7.2e-66 255.0 339 44.8
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 7.2e-66 255.0 337 47.2
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 7.2e-66 255.0 339 48.7
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 1.6e-65 253.8 331 48.6
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 2.7e-65 253.1 305 50.5
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 3.6e-65 252.7 223 62.3
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 4.7e-65 252.3 245 57.6
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 8.0e-65 251.5 276 50.0
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.4e-64 250.8 290 49.7
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 4.0e-64 249.2 342 47.7
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 4.0e-64 249.2 341 47.2
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 1.2e-63 247.7 325 47.1
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 1.2e-63 247.7 250 54.4
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 1.5e-63 247.3 344 45.1
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 2.6e-63 246.5 337 49.3
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 3.3e-63 246.1 342 47.1
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 8.2e-62 241.5 243 54.3
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 9.1e-61 238.0 308 48.4
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.6e-60 237.3 341 43.4
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 5.9e-60 235.3 371 43.7
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 7.7e-60 235.0 341 43.4
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.7e-59 233.8 341 43.1
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 2.2e-59 233.4 280 50.0
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 4.7e-57 225.7 331 44.4
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 6.1e-57 225.3 334 44.6
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 7.5e-55 218.4 318 47.2
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 3.1e-53 213.0 300 44.3
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 1.6e-52 210.7 334 45.8
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 4.5e-52 209.1 338 47.3
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 4.0e-48 196.1 285 44.9
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 5.2e-48 195.7 176 62.5
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 1.2e-47 194.5 260 46.5
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 1.5e-47 194.1 191 57.6
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 3.4e-47 193.0 238 47.1
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 2.2e-46 190.3 252 46.8
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 4.9e-46 189.1 216 56.9
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 6.3e-46 188.7 163 62.6
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 6.3e-46 188.7 281 44.8
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 8.3e-46 188.3 235 48.9
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 2.4e-45 186.8 313 41.9
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 4.7e-41 172.6 237 43.9
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 6.8e-40 168.7 205 56.1
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 8.9e-40 168.3 205 55.1
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 3.4e-39 166.4 205 51.2
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 1.3e-38 164.5 165 58.2
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 5.4e-37 159.1 243 41.2
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 9.2e-37 158.3 162 57.4
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 4.9e-30 136.0 134 52.2
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 7.0e-29 132.1 146 48.6
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.0e-27 128.3 144 46.5
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 2.3e-27 127.1 160 52.5
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.5e-26 124.4 134 53.7
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 8.9e-24 115.2 212 40.6
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.2e-23 114.8 145 48.3
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 3.4e-23 113.2 176 42.0
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.7e-22 110.9 120 49.2
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 1.1e-21 108.2 121 48.8
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 1.2e-15 88.2 103 46.6
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 3.4e-15 86.7 159 34.0
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 3.8e-14 83.2 108 45.4
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 6.0e-12 75.9 97 44.3
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 3.3e-10 70.1 122 38.5
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 2.8e-09 67.0 68 60.3
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 4.0e-08 63.2 36 83.3
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 1.5e-07 61.2 49 57.1


User provided reference genes

Program Settings