Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 0.0e+00 3351.2 1722 100.0
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 0.0e+00 2986.8 1723 88.5
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 0.0e+00 2959.1 1723 87.1
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 0.0e+00 2939.4 1726 87.9
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 0.0e+00 2615.9 1726 78.0
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 0.0e+00 2591.6 1726 77.2
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 0.0e+00 2530.7 1726 75.3
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 0.0e+00 2499.5 1739 74.1
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 2476.8 1725 74.2
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 2437.9 1723 72.9
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 2388.2 1757 70.3
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 0.0e+00 2054.3 1739 61.0
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 0.0e+00 2005.3 1733 60.8
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 0.0e+00 1973.0 1731 59.8
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 0.0e+00 1938.7 1730 58.9
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1916.7 1730 57.5
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1902.9 1725 57.6
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 0.0e+00 1895.2 1731 57.7
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 0.0e+00 1885.9 1814 56.1
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 0.0e+00 1884.0 1728 56.9
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1874.4 1730 56.5
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 0.0e+00 1867.4 1733 56.5
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 0.0e+00 1855.5 1727 55.8
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 0.0e+00 1841.6 1729 55.9
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 0.0e+00 1830.1 1728 55.9
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 0.0e+00 1813.5 1730 55.3
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 0.0e+00 1805.0 1729 55.3
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 0.0e+00 1798.1 1711 55.1
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1765.4 1725 54.3
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1761.1 1726 54.2
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1742.6 1727 53.6
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1729.1 1874 50.7
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 0.0e+00 1723.8 1726 51.9
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1717.6 1917 49.8
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 0.0e+00 1717.2 1736 52.5
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 0.0e+00 1709.5 1810 51.5
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 0.0e+00 1701.8 1726 51.6
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 0.0e+00 1699.1 1569 56.3
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 0.0e+00 1698.7 1731 52.7
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1680.2 1752 50.9
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 0.0e+00 1679.8 1859 50.5
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 0.0e+00 1679.1 1734 52.4
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 0.0e+00 1674.4 1727 52.0
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 0.0e+00 1673.7 1734 52.7
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 0.0e+00 1671.0 1729 51.8
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1662.9 1749 50.7
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 0.0e+00 1656.7 1738 51.7
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1649.8 1503 57.8
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 0.0e+00 1643.6 1736 51.8
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 0.0e+00 1641.3 1500 56.5
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1612.4 1449 58.1
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 0.0e+00 1609.7 1737 50.4
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1597.4 1727 49.7
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 0.0e+00 1590.1 1730 48.9
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 0.0e+00 1587.0 1724 49.2
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1585.1 1724 49.2
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1578.1 1725 48.9
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1578.1 1725 48.9
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 0.0e+00 1578.1 1725 48.9
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 0.0e+00 1576.2 1749 49.4
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 0.0e+00 1567.7 1726 48.4
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 0.0e+00 1562.7 1723 48.6
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 0.0e+00 1561.2 1730 48.6
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 0.0e+00 1559.3 1727 48.4
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 0.0e+00 1553.5 1753 48.8
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 0.0e+00 1545.8 1721 48.3
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 0.0e+00 1536.5 1728 49.5
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 0.0e+00 1534.2 1743 48.5
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 0.0e+00 1489.6 1729 47.4
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 0.0e+00 1452.2 1725 47.4
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 0.0e+00 1437.9 1841 45.2
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1418.7 1523 49.7
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 0.0e+00 1408.3 1566 48.4
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1400.6 1758 45.7
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 0.0e+00 1395.9 1799 44.1
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 0.0e+00 1375.1 1376 52.3
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1364.4 1733 45.1
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 0.0e+00 1335.5 1769 45.2
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1335.1 1735 44.0
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 0.0e+00 1324.7 1744 42.7
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 0.0e+00 1308.5 1386 51.7
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 0.0e+00 1276.9 1224 53.9
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 0.0e+00 1224.2 1300 50.6
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 0.0e+00 1174.5 1723 39.5
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1140.9 1755 39.8
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1137.5 1945 37.3
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 0.0e+00 1134.0 1701 40.0
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 0.0e+00 1122.5 1212 50.7
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 2.1e-282 976.9 1061 52.5
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 1.1e-267 927.9 1033 48.4
Phvul.004G009161 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.0e-266 922.2 648 71.3
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.7e-265 918.7 611 75.5
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 2.2e-247 860.5 834 53.4
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 3.3e-240 836.6 839 54.0
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 1.0e-228 798.5 643 63.5
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 8.3e-223 778.9 533 74.7
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 6.1e-210 736.1 956 46.4
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 1.2e-200 705.3 810 48.4
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 9.2e-198 695.7 1804 30.0
Actinidia36109 Actinidia chinensis HOM05D004010 ORTHO05D004995 9.2e-190 669.1 645 53.3
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 3.8e-175 620.5 826 43.2
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 5.1e-172 610.1 786 42.9
Phvul.004G009109 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.6e-172 609.8 438 69.4
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 3.4e-168 597.4 1150 36.0
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 1.6e-165 588.6 597 53.1
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 8.7e-164 582.8 372 79.0
COL.COLO4_29096 Corchorus olitorius HOM05D004010 ORTHO05D004995 1.4e-161 575.5 531 54.2
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 1.1e-147 529.3 1709 27.6
Phvul.007G113156 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.3e-147 527.7 341 79.8
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 4.3e-147 527.3 703 42.7
Psat2g096200 Pisum sativum HOM05D004010 ORTHO05D004995 1.8e-145 521.9 303 88.4
Cc07_g01810 Coffea canephora HOM05D004010 ORTHO05D004995 1.3e-127 462.6 431 54.5
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.0e-119 436.4 456 52.6
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 1.0e-119 436.4 404 55.0
Prupe.3G290500 Prunus persica HOM05D004010 ORTHO05D004995 8.8e-116 423.3 433 51.7
Gohir.A09G028500 Gossypium hirsutum HOM05D004010 ORTHO05D004995 1.2e-101 376.3 455 47.5
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.0e-92 346.7 337 53.7
CSS0026540 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 5.8e-91 340.9 348 52.9
SEGI_20333 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 1.1e-81 310.1 444 38.1
Phvul.004G009701 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 4.0e-76 291.6 189 77.8
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 1.3e-74 286.6 548 35.4
Sopen00g012710 Solanum pennellii HOM05D004010 ORTHO05D004995 1.4e-73 283.1 275 53.5
unitig_0.g541 Utricularia gibba HOM05D004010 ORTHO05D004995 1.0e-71 276.9 334 44.3
CDE05G2835 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.5e-70 273.1 502 35.3
Actinidia15573 Actinidia chinensis HOM05D004010 ORTHO05D004995 3.4e-59 235.3 254 53.5
CBR_g19445 Chara braunii HOM05D004010 ORTHO05D004995 4.5e-51 208.4 830 26.1
Ciclev10017517m.g Citrus clementina HOM05D004010 ORTHO05D004995 2.9e-50 205.7 212 52.4
Phvul.007G112678 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.8e-50 205.3 130 78.5
Oeu006812.1 Olea europaea HOM05D004010 ORTHO05D004995 7.9e-48 197.6 300 40.0
SEGI_19034 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 2.5e-46 192.6 486 28.2
MBI10_g38112_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 7.4e-46 191.0 267 44.2
FAN05G1652 Fragaria x ananassa HOM05D004010 ORTHO05D004995 2.1e-45 189.5 201 53.2
Atru.chr6.2279 Acer truncatum HOM05D004010 ORTHO05D004995 2.6e-43 182.6 147 58.5
Atru.chr6.2281 Acer truncatum HOM05D004010 ORTHO05D004995 3.0e-39 169.1 142 60.6
Phvul.004G008861 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.1e-36 160.6 106 76.4
Phvul.004G009000 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.1e-36 160.6 117 70.1
FvH4_6g51542 Fragaria vesca HOM05D004010 ORTHO05D004995 1.8e-36 159.8 174 51.1
Hma1.2p1_1291F.1_g273520 Hydrangea macrophylla HOM05D004010 ORTHO05D004995 5.3e-36 158.3 269 40.9
Atru.chr6.2371 Acer truncatum HOM05D004010 ORTHO05D004995 3.4e-35 155.6 161 49.1
FAN02G4182 Fragaria x ananassa HOM05D004010 ORTHO05D004995 3.4e-35 155.6 186 49.5
RcHm_v2.0_Chr5g0081041 Rosa chinensis HOM05D004010 ORTHO05D004995 7.6e-35 154.5 185 47.0
TPR.G14699 Trifolium pratense HOM05D000127 ORTHO05D000243 3.2e-33 149.1 111 67.6
CBR_g19447 Chara braunii HOM05D004010 ORTHO05D004995 4.2e-33 148.7 251 36.3
HPP92_004912 Vanilla planifolia HOM05D004010 ORTHO05D004995 3.5e-32 145.6 156 50.6
FAN14G1049 Fragaria x ananassa HOM05D004010 ORTHO05D004995 2.8e-29 136.0 224 40.6
TPR.G14702 Trifolium pratense HOM05D000127 ORTHO05D000243 3.4e-27 129.0 76 82.9
FvH4_6g51560 Fragaria vesca HOM05D004010 ORTHO05D004995 1.9e-25 123.2 123 48.8
FvH4_5g31861 Fragaria vesca HOM05D004010 ORTHO05D046033 1.6e-24 120.2 85 64.7
Psat3g106080 Pisum sativum HOM05D003926 ORTHO05D005273 3.3e-22 112.5 68 80.9
Atru.chr6.2280 Acer truncatum HOM05D004010 ORTHO05D004995 2.8e-21 109.4 102 53.9
TPR.G14087 Trifolium pratense HOM05D004010 ORTHO05D004995 3.8e-18 99.0 52 90.4
SEGI_32252 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 5.0e-18 98.6 75 57.3
FvH4_6g51551 Fragaria vesca HOM05D004010 ORTHO05D004995 2.7e-16 92.8 86 55.8
MBI10_g39276_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 3.0e-15 89.4 95 52.6
MBI10_g46391_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 3.0e-15 89.4 103 50.5
Atru.chr6.2368 Acer truncatum HOM05D004010 ORTHO05D004995 5.1e-15 88.6 77 59.7
BcaB05g24178 Brassica carinata HOM05D004010 ORTHO05D027244 7.4e-14 84.7 149 36.2
FvH4_6g51540 Fragaria vesca HOM05D004010 ORTHO05D004995 1.3e-13 84.0 93 45.2
Psat7g185600 Pisum sativum HOM05D000747 ORTHO05D004807 1.3e-13 84.0 67 65.7
RcHm_v2.0_Chr4g0387881 Rosa chinensis HOM05D004010 ORTHO05D343204 3.7e-13 82.4 141 35.5
Atru.chr6.2369 Acer truncatum HOM05D004010 ORTHO05D004995 3.5e-11 75.9 124 38.7
CSS0021155 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 2.2e-10 73.2 95 47.4
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 3.8e-10 72.4 151 35.8
BcaB07g33347 Brassica carinata HOM05D004010 ORTHO05D004995 8.5e-10 71.2 84 46.4
RcHm_v2.0_Chr3g0488481 Rosa chinensis HOM05D004010 ORTHO05D004995 8.5e-10 71.2 122 37.7
Atru.chr6.2275 Acer truncatum HOM05D004010 ORTHO05D004995 1.9e-09 70.1 63 60.3
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 5.5e-09 68.6 59 52.5
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 5.5e-09 68.6 59 52.5
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 1.2e-08 67.4 46 71.7
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 1.4e-07 63.9 46 67.4


User provided reference genes

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