Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g052560 Pisum sativum HOM05D003588 ORTHO05D004252 0.0e+00 1992.2 1035 100.0
Ca_04138_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 0.0e+00 1585.5 1053 79.1
TPR.G25236 Trifolium pratense HOM05D003588 ORTHO05D004252 0.0e+00 1573.5 1041 79.9
Medtr6g004240 Medicago truncatula HOM05D003588 ORTHO05D004252 0.0e+00 1540.4 1035 77.8
Glyma.02G089000 Glycine max HOM05D003588 ORTHO05D004252 0.0e+00 1483.4 1038 74.5
Lj2g0002647 Lotus japonicus HOM05D003588 ORTHO05D004252 0.0e+00 1472.6 1038 74.5
Glyma.05G002100 Glycine max HOM05D003588 ORTHO05D004252 0.0e+00 1471.8 1041 74.1
Lj1g0020363 Lotus japonicus HOM05D003588 ORTHO05D004252 0.0e+00 1403.3 1063 69.6
Lalb_Chr10g0091441 Lupinus albus HOM05D003588 ORTHO05D004252 0.0e+00 1394.8 1036 70.5
VMungo1383G2782 Vigna mungo HOM05D003588 ORTHO05D004252 0.0e+00 1348.2 1027 69.0
VMungo0464G0444 Vigna mungo HOM05D003588 ORTHO05D004252 0.0e+00 1340.5 1017 69.7
arahy.Tifrunner.gnm1.ann1.JMF5N7 Arachis hypogaea HOM05D003588 ORTHO05D004252 0.0e+00 1337.0 1034 68.3
arahy.Tifrunner.gnm1.ann1.QJYU1D Arachis hypogaea HOM05D003588 ORTHO05D004252 0.0e+00 1337.0 1034 68.3
Ca_08090_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 0.0e+00 1325.8 1033 68.4
TPR.G16544 Trifolium pratense HOM05D003588 ORTHO05D004252 0.0e+00 1320.1 1051 67.7
Medtr7g082650 Medicago truncatula HOM05D003588 ORTHO05D004252 0.0e+00 1305.4 1038 67.1
Gohir.A07G174400 Gossypium hirsutum HOM05D003588 ORTHO05D004252 0.0e+00 1270.8 1039 64.1
Gorai.001G202700 Gossypium raimondii HOM05D003588 ORTHO05D004252 0.0e+00 1269.6 1039 64.3
Thecc.04G128900 Theobroma cacao HOM05D003588 ORTHO05D004252 0.0e+00 1268.1 1036 64.6
Gohir.D07G181700 Gossypium hirsutum HOM05D003588 ORTHO05D004252 0.0e+00 1264.6 1039 64.0
CsaV3_2G033840 Cucumis sativus L. HOM05D003588 ORTHO05D004252 0.0e+00 1259.6 1039 64.4
Sed0005237 Sechium edule HOM05D003588 ORTHO05D004252 0.0e+00 1258.8 1039 63.7
Lalb_Chr06g0176731 Lupinus albus HOM05D003588 ORTHO05D004252 0.0e+00 1258.4 1060 65.3
TAR622G0110 Trochodendron aralioides HOM05D003588 ORTHO05D004252 0.0e+00 1252.7 1046 64.0
Ciclev10010937m.g Citrus clementina HOM05D003588 ORTHO05D004252 0.0e+00 1251.9 1037 64.5
Gorai.007G184400 Gossypium raimondii HOM05D003588 ORTHO05D004252 0.0e+00 1246.5 1040 62.8
Gohir.A11G165800 Gossypium hirsutum HOM05D003588 ORTHO05D004252 0.0e+00 1243.0 1040 62.6
GSVIVG01030979001 Vitis vinifera HOM05D003588 ORTHO05D004252 0.0e+00 1241.5 1034 63.5
Potri.004G095900 Populus trichocarpa HOM05D003588 ORTHO05D004252 0.0e+00 1240.7 1035 63.3
CSS0025104 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 0.0e+00 1238.0 1039 63.1
Atru.chr1.1617 Acer truncatum HOM05D003588 ORTHO05D004252 0.0e+00 1234.6 1039 63.5
CSS0016689 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 0.0e+00 1234.2 1039 62.9
TWI53G1720 Tripterygium wilfordii HOM05D003588 ORTHO05D004252 0.0e+00 1231.9 1037 63.7
MELO3C008156.2 Cucumis melo HOM05D003588 ORTHO05D004252 0.0e+00 1220.7 1035 63.6
PGR004G1031 Punica granatum HOM05D003588 ORTHO05D004252 0.0e+00 1218.0 1037 61.5
Haze_14184 Corylus avellana HOM05D003588 ORTHO05D004252 0.0e+00 1216.4 1113 60.8
Manes.02G071350 Manihot esculenta HOM05D003588 ORTHO05D004252 0.0e+00 1215.7 1037 62.1
QL02p050339 Quercus lobata HOM05D003588 ORTHO05D004252 0.0e+00 1207.6 1082 61.0
COL.COLO4_09374 Corchorus olitorius HOM05D003588 ORTHO05D004252 0.0e+00 1205.3 1083 60.2
arahy.Tifrunner.gnm1.ann1.K3Z2GB Arachis hypogaea HOM05D003588 ORTHO05D004252 0.0e+00 1202.6 1070 62.6
FvH4_7g07990 Fragaria vesca HOM05D003588 ORTHO05D004252 0.0e+00 1201.0 1040 62.3
Dinv34794 Davidia involucrata HOM05D003588 ORTHO05D004252 0.0e+00 1195.6 1018 63.5
Hund16184 Selenicereus undatus HOM05D003588 ORTHO05D004252 0.0e+00 1188.3 1020 61.8
Duzib138G1780 Durio zibethinus HOM05D003588 ORTHO05D004252 0.0e+00 1186.8 1037 61.1
ClCG11G007740 Citrullus lanatus HOM05D003588 ORTHO05D004252 0.0e+00 1186.4 1024 62.5
PSO017G4387 Papaver somniferum HOM05D003588 ORTHO05D004252 0.0e+00 1184.1 1045 61.1
Prupe.3G148000 Prunus persica HOM05D003588 ORTHO05D004252 0.0e+00 1183.3 1041 61.3
CANSAT78G2002 Cannabis sativa HOM05D003588 ORTHO05D004252 0.0e+00 1182.5 1041 61.0
Eucgr.F02790 Eucalyptus grandis HOM05D003588 ORTHO05D004252 0.0e+00 1182.2 1039 60.4
PSO478G1111 Papaver somniferum HOM05D003588 ORTHO05D004252 0.0e+00 1181.0 1044 60.7
Cc07_g08540 Coffea canephora HOM05D003588 ORTHO05D004252 0.0e+00 1177.9 1038 61.3
Nn4g23954 Nelumbo nucifera HOM05D003588 ORTHO05D004252 0.0e+00 1176.8 1046 60.6
Sabra04G0065000 Salix brachista HOM05D003588 ORTHO05D004252 0.0e+00 1176.0 1036 61.0
AUR62009039 Chenopodium quinoa HOM05D003588 ORTHO05D004252 0.0e+00 1175.6 1035 60.7
Phvul.004G002300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 0.0e+00 1174.5 854 71.5
Psat3g097680 Pisum sativum HOM05D003588 ORTHO05D004252 0.0e+00 1171.8 1040 62.1
FAN10G2177 Fragaria x ananassa HOM05D003588 ORTHO05D004252 0.0e+00 1169.8 1111 58.4
MD09G1255900 Malus domestica HOM05D003588 ORTHO05D004252 0.0e+00 1169.5 1040 61.5
MD17G1249900 Malus domestica HOM05D003588 ORTHO05D004252 0.0e+00 1168.3 1025 62.2
FAN06G2375 Fragaria x ananassa HOM05D003588 ORTHO05D004252 0.0e+00 1167.5 1105 58.6
Nitab4.5_0000753g0220 Nicotiana tabacum HOM05D003588 ORTHO05D004252 0.0e+00 1166.4 1029 61.5
MBI16_g38076_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 0.0e+00 1164.8 1084 58.7
Rhsim10G0072600 Rhododendron simsii HOM05D003588 ORTHO05D004252 0.0e+00 1164.1 1107 57.8
Manes.01G112900 Manihot esculenta HOM05D003588 ORTHO05D004252 0.0e+00 1162.9 1036 60.1
THA.LOC104820941 Tarenaya hassleriana HOM05D003588 ORTHO05D004252 0.0e+00 1157.5 1048 59.7
Migut.H00238 Erythranthe guttata HOM05D003588 ORTHO05D004252 0.0e+00 1154.4 1040 58.9
ECA232G2944 Erigeron canadensis HOM05D003588 ORTHO05D004252 0.0e+00 1151.3 1044 59.7
DCAR_025903 Daucus carota HOM05D003588 ORTHO05D004252 0.0e+00 1149.8 1045 59.6
Sopen02g031000 Solanum pennellii HOM05D003588 ORTHO05D004252 0.0e+00 1145.2 1053 59.5
CAN.G625.55 Capsicum annuum HOM05D003588 ORTHO05D000105 0.0e+00 1140.6 1034 60.1
CSS0045616 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 0.0e+00 1139.4 1041 58.9
AUR62023267 Chenopodium quinoa HOM05D003588 ORTHO05D004252 0.0e+00 1137.1 1034 59.7
BolC2t06743H Brassica oleracea HOM05D003588 ORTHO05D004252 0.0e+00 1132.9 1037 59.2
C02p08190 Brassica napus HOM05D003588 ORTHO05D004252 0.0e+00 1131.3 1037 59.2
Solyc02g086330.4 Solanum lycopersicum HOM05D003588 ORTHO05D004252 0.0e+00 1130.5 1050 58.7
Actinidia15898 Actinidia chinensis HOM05D003588 ORTHO05D004252 0.0e+00 1129.8 1025 59.6
Phvul.008G008300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 0.0e+00 1129.8 808 72.6
Sp6g27950 Schrenkiella parvula HOM05D003588 ORTHO05D004252 0.0e+00 1123.2 1035 58.7
BcaC03g18474 Brassica carinata HOM05D003588 ORTHO05D004252 0.0e+00 1113.6 1036 58.5
BraA02t05314Z Brassica rapa HOM05D003588 ORTHO05D004252 0.0e+00 1113.6 1037 58.3
FAN03G2066 Fragaria x ananassa HOM05D003588 ORTHO05D004252 0.0e+00 1113.6 1073 58.2
MSTRG.2779 Avicennia marina HOM05D003588 ORTHO05D004252 0.0e+00 1112.8 1041 57.5
Oeu050384.1 Olea europaea HOM05D003588 ORTHO05D004252 0.0e+00 1111.7 1066 56.8
CARHR197100 Cardamine hirsuta HOM05D003588 ORTHO05D004252 0.0e+00 1111.3 1035 58.3
Carub.0006s1440 Capsella rubella HOM05D003588 ORTHO05D004252 0.0e+00 1109.7 1044 57.9
Lj4C184G4 Lonicera japonica HOM05D003588 ORTHO05D004252 0.0e+00 1108.2 1067 57.2
AL6G27090 Arabidopsis lyrata HOM05D003588 ORTHO05D004252 0.0e+00 1096.6 1040 57.5
AT5G16210 Arabidopsis thaliana HOM05D003588 ORTHO05D004252 0.0e+00 1086.6 1038 56.8
Aa31LG11G13400 Aethionema arabicum HOM05D003588 ORTHO05D004252 0.0e+00 1078.9 1041 56.6
arahy.Tifrunner.gnm1.ann1.CE0ZIG Arachis hypogaea HOM05D003588 ORTHO05D004252 0.0e+00 1076.2 871 66.8
ATR0681G033 Amborella trichopoda HOM05D003588 ORTHO05D004252 7.1e-312 1074.3 1043 56.1
HanXRQChr09g0262691 Helianthus annuus HOM05D003588 ORTHO05D004252 7.1e-312 1074.3 1033 56.9
Lsat_1_v5_gn_4_155600 Lactuca sativa HOM05D003588 ORTHO05D004252 7.1e-312 1074.3 1030 57.0
SGA_v2.0_scaffold49G18119 Striga asiatica HOM05D003588 ORTHO05D004252 2.1e-311 1072.4 1046 56.4
Ah.10g037630 Amaranthus hybridus HOM05D003588 ORTHO05D004252 1.1e-307 1060.1 1026 56.5
Gohir.D11G172000 Gossypium hirsutum HOM05D003588 ORTHO05D004252 5.5e-307 1057.7 851 64.0
EL10Ac2g04530 Beta vulgaris HOM05D003588 ORTHO05D004252 1.0e-305 1053.5 1084 54.8
Thhalv10012470m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 1.0e-305 1053.5 1034 55.5
Sc10g0001060 Simmondsia chinensis HOM05D003588 ORTHO05D004252 3.7e-303 1045.0 992 57.1
Peaxi162Scf00877g00020 Petunia axillaris HOM05D003588 ORTHO05D004252 4.1e-302 1041.6 1018 56.8
Os01g0514300 Oryza sativa ssp. japonica HOM05D003588 ORTHO05D004252 4.0e-297 1025.0 1049 54.1
vmacro22953 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 6.4e-295 1017.7 1363 45.6
BcaNung02226 Brassica carinata HOM05D003588 ORTHO05D004252 1.1e-294 1016.9 1036 54.8
BcaC03g18481 Brassica carinata HOM05D003588 ORTHO05D004252 2.4e-294 1015.8 1046 54.7
Nitab4.5_0008521g0020 Nicotiana tabacum HOM05D003588 ORTHO05D004252 3.6e-290 1001.9 1029 55.1
Cpa.g.sc170.32 Carica papaya HOM05D003588 ORTHO05D004252 1.5e-275 953.4 1025 53.5
HPP92_020150 Vanilla planifolia HOM05D003588 ORTHO05D004252 1.5e-267 926.8 988 53.2
MBI16_g39817_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 1.2e-261 907.1 855 58.9
A02p03430 Brassica napus HOM05D003588 ORTHO05D004252 3.8e-255 885.6 736 62.9
unitig_899.g14514 Utricularia gibba HOM05D003588 ORTHO05D004252 1.8e-252 876.7 1065 48.2
CiPaw.04G044200 Carya illinoinensis HOM05D003588 ORTHO05D004252 6.2e-250 868.2 566 76.7
QL04p012047 Quercus lobata HOM05D003588 ORTHO05D004252 2.6e-248 862.8 618 71.2
Mapoly0103s0005 Marchantia polymorpha HOM05D003588 ORTHO05D004252 3.3e-227 792.7 1036 44.6
Pp3c18_21770 Physcomitrium patens HOM05D003588 ORTHO05D004252 6.5e-223 778.5 1039 43.3
Pp3c18_21850 Physcomitrium patens HOM05D003588 ORTHO05D004252 1.9e-222 776.9 1039 43.2
AagrBONN_evm.TU.Sc2ySwM_344.2595 Anthoceros agrestis HOM05D003588 ORTHO05D004252 3.2e-222 776.2 1030 44.9
vmacro05528 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 3.8e-215 752.7 804 53.0
MD17G1249700 Malus domestica HOM05D003588 ORTHO05D004252 3.7e-210 736.1 530 71.1
Dinv33964 Davidia involucrata HOM05D003588 ORTHO05D004252 7.7e-208 728.4 493 73.2
Pp3c3_38010 Physcomitrium patens HOM05D003588 ORTHO05D004252 6.5e-199 698.7 1034 40.8
RcHm_v2.0_Chr3g0494111 Rosa chinensis HOM05D003588 ORTHO05D004252 6.8e-188 662.1 636 59.3
SMO356G0339 Selaginella moellendorffii HOM05D003588 ORTHO05D004252 2.0e-187 660.6 1016 40.0
Aqoxy3G00198 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 2.2e-186 657.1 639 59.2
CDE09G1345 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 4.0e-180 636.3 758 47.6
CBR_g34722 Chara braunii HOM05D003588 ORTHO05D004252 8.3e-162 575.5 1251 34.7
Duzib133G0570 Durio zibethinus HOM05D003588 ORTHO05D004252 2.1e-157 560.8 399 68.2
RcHm_v2.0_Chr3g0494121 Rosa chinensis HOM05D003588 ORTHO05D004252 3.5e-152 543.5 397 67.5
Aqoxy3G00199 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 2.5e-150 537.3 402 66.7
Dinv33965 Davidia involucrata HOM05D003588 ORTHO05D004252 5.3e-140 503.1 525 54.9
TPR.G25232 Trifolium pratense HOM05D003588 ORTHO05D004252 1.5e-134 485.0 270 89.6
MD17G1249200 Malus domestica HOM05D003588 ORTHO05D004252 2.6e-131 474.2 409 62.1
arahy.Tifrunner.gnm1.ann1.SZ4JBM Arachis hypogaea HOM05D003588 ORTHO05D009236 6.9e-116 422.9 392 61.0
Zm00001eb341830 Zea mays HOM05D003588 ORTHO05D004252 8.0e-88 329.7 221 73.8
FAN01G1795 Fragaria x ananassa HOM05D003588 ORTHO05D004252 1.2e-64 252.7 392 44.9
A10p22850 Brassica napus HOM05D003588 ORTHO05D004252 4.4e-62 244.2 211 59.2
BraA10t44352Z Brassica rapa HOM05D003588 ORTHO05D004252 4.6e-59 234.2 207 58.5
Psat1g004680 Pisum sativum HOM05D003588 ORTHO05D004252 2.3e-58 231.9 158 72.8
Zm00001eb341840 Zea mays HOM05D003588 ORTHO05D004252 2.3e-58 231.9 182 59.9
FAN01G1119 Fragaria x ananassa HOM05D003588 ORTHO05D004252 3.5e-51 208.0 164 65.9
CAN.G1113.1 Capsicum annuum HOM05D003588 ORTHO05D004252 4.7e-48 197.6 375 35.2
BcaC04g18898 Brassica carinata HOM05D003588 ORTHO05D004252 1.2e-46 193.0 209 54.5
BcaB05g22772 Brassica carinata HOM05D003588 ORTHO05D004252 1.2e-40 172.9 202 48.5
Gohir.A08G093462 Gossypium hirsutum HOM05D003588 ORTHO05D004252 2.6e-38 165.2 183 53.0
Lalb_Chr00c03g0404241 Lupinus albus HOM05D003588 ORTHO05D004252 1.2e-35 156.4 111 70.3
Thhalv10014979m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 2.1e-35 155.6 113 68.1
arahy.Tifrunner.gnm1.ann1.LXU3L0 Arachis hypogaea HOM05D003588 ORTHO05D004252 4.3e-33 147.9 151 56.3
Hma1.2p1_0391F.1_g142780 Hydrangea macrophylla HOM05D003588 ORTHO05D004252 1.3e-32 146.4 94 76.6
Lalb_Chr00c03g0404231 Lupinus albus HOM05D003588 ORTHO05D004252 4.4e-30 137.9 104 61.5
Ca_04476_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 5.8e-30 137.5 207 44.9
Cre03.g205137 Chlamydomonas reinhardtii HOM05D003588 ORTHO05D004252 7.8e-27 127.1 215 34.9
arahy.Tifrunner.gnm1.ann1.3AG3I6 Arachis hypogaea HOM05D003588 ORTHO05D004252 8.7e-26 123.6 83 69.9
Ca_27564_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 1.1e-25 123.2 162 46.9
Lsat_1_v5_gn_9_96101 Lactuca sativa HOM05D003588 ORTHO05D004252 9.0e-23 113.6 93 69.9
QL04p012055 Quercus lobata HOM05D003588 ORTHO05D004252 3.8e-21 108.2 65 76.9
C09p60810 Brassica napus HOM05D003588 ORTHO05D004252 4.2e-20 104.8 280 31.4
BolC9t58921H Brassica oleracea HOM05D003588 ORTHO05D004252 4.2e-20 104.8 280 31.4
Ca_10866_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 1.0e-18 100.1 148 43.2
Dinv12730 Davidia involucrata HOM05D003588 ORTHO05D004252 5.6e-17 94.4 60 73.3
BcaB08g36855 Brassica carinata HOM05D003588 ORTHO05D004252 2.8e-16 92.0 125 48.0
Lsat_1_v5_gn_5_147680 Lactuca sativa HOM05D003588 ORTHO05D004252 8.1e-16 90.5 86 52.3
Aa31sc24G110 Aethionema arabicum HOM05D003588 ORTHO05D004252 1.4e-12 79.7 159 36.5
Ca_03868_v3 Cicer arietinum L. HOM05D000047 ORTHO05D000044 2.5e-12 79.0 79 55.7
CSS0049688 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 3.2e-12 78.6 47 78.7
MCO16G648 Micromonas commoda HOM05D003588 ORTHO05D004252 2.3e-10 72.4 794 20.5
CDE09G0638 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 3.0e-10 72.0 48 66.7
Lsat_1_v5_gn_1_73461 Lactuca sativa HOM05D003588 ORTHO05D004252 5.7e-09 67.8 84 44.0
AagrBONN_evm.TU.Sc2ySwM_228.5767 Anthoceros agrestis HOM05D003588 ORTHO05D004252 7.4e-09 67.4 71 47.9
Aqoxy1G03195 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 9.6e-09 67.0 63 50.8
TAR374G0202 Trochodendron aralioides HOM05D003588 ORTHO05D004252 1.1e-07 63.5 34 82.4
TAR374G0225 Trochodendron aralioides HOM05D003588 ORTHO05D004252 2.4e-07 62.4 34 82.4
TPR.G213 Trifolium pratense HOM05D003588 ORTHO05D004252 3.1e-07 62.0 36 72.2
Gohir.A09G038265 Gossypium hirsutum HOM05D003588 ORTHO05D005374 2.6e-06 58.9 74 47.3


User provided reference genes

Program Settings