Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g050560 Pisum sativum HOM05D001046 ORTHO05D050390 3.2e-81 305.1 158 100.0
Psat5g233800 Pisum sativum HOM05D000141 ORTHO05D050390 1.7e-45 186.4 116 82.8
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 1.7e-42 176.4 96 92.7
Psat4g060880 Pisum sativum HOM05D003157 ORTHO05D004447 7.0e-36 154.5 88 93.2
Medtr4g104880 Medicago truncatula HOM05D003157 ORTHO05D004447 1.3e-26 123.6 92 76.1
TPR.G37494 Trifolium pratense HOM05D003157 ORTHO05D004447 2.5e-25 119.4 91 75.8
Ca_14277_v3 Cicer arietinum L. HOM05D003157 ORTHO05D004447 1.4e-23 113.6 94 70.2
Psat0s251g0080 Pisum sativum HOM05D001046 ORTHO05D005883 3.3e-17 92.4 51 90.2
Psat1g160480 Pisum sativum HOM05D001046 ORTHO05D005883 1.2e-16 90.5 50 92.0
Medtr0010s0220 Medicago truncatula HOM05D001046 ORTHO05D005883 1.6e-16 90.1 50 92.0
Psat0s439g0040 Pisum sativum HOM05D001046 ORTHO05D005883 1.4e-15 87.0 50 88.0
Glyma.01G093902 Glycine max HOM05D001046 ORTHO05D005883 4.0e-15 85.5 50 86.0
Glyma.02G128900 Glycine max HOM05D001046 ORTHO05D005883 8.9e-15 84.3 50 84.0
Lj2g0002950 Lotus japonicus HOM05D001046 ORTHO05D005883 2.0e-14 83.2 50 84.0
BolC7t42425H Brassica oleracea HOM05D001046 ORTHO05D005883 2.6e-14 82.8 53 71.7
Dinv27415 Davidia involucrata HOM05D001046 ORTHO05D005883 3.4e-14 82.4 55 76.4
Lj3C1023G11 Lonicera japonica HOM05D001046 ORTHO05D005883 3.4e-14 82.4 82 58.5
THA.LOC104808446 Tarenaya hassleriana HOM05D001046 ORTHO05D005883 7.5e-14 81.3 55 74.5
Aa31LG7G8840 Aethionema arabicum HOM05D001046 ORTHO05D005883 9.8e-14 80.9 55 74.5
C07p19150 Brassica napus HOM05D001046 ORTHO05D005883 9.8e-14 80.9 60 68.3
COL.COLO4_27721 Corchorus olitorius HOM05D001046 ORTHO05D005883 1.7e-13 80.1 50 78.0
BcaB03g14057 Brassica carinata HOM05D001046 ORTHO05D005883 2.2e-13 79.7 55 72.7
BcaC06g35168 Brassica carinata HOM05D001046 ORTHO05D005883 2.2e-13 79.7 55 72.7
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 2.2e-13 79.7 55 72.7
Migut.L01124 Erythranthe guttata HOM05D001046 ORTHO05D005883 2.9e-13 79.3 50 76.0
MD16G1051700 Malus domestica HOM05D001046 ORTHO05D005883 3.7e-13 79.0 50 76.0
SalBow8G4857 Salvia bowleyana HOM05D001046 ORTHO05D005883 3.7e-13 79.0 50 78.0
AT1G26170 Arabidopsis thaliana HOM05D001046 ORTHO05D005883 4.9e-13 78.6 55 69.1
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 4.9e-13 78.6 55 70.9
Thhalv10006742m.g Eutrema salsugineum HOM05D001046 ORTHO05D005883 6.4e-13 78.2 55 69.1
Oeu002624.1 Olea europaea HOM05D001046 ORTHO05D005883 6.4e-13 78.2 50 76.0
MSTRG.7703 Avicennia marina HOM05D001046 ORTHO05D005883 8.3e-13 77.8 50 78.0
Thecc.02G315500 Theobroma cacao HOM05D001046 ORTHO05D005883 8.3e-13 77.8 50 74.0
Ah.03g138130 Amaranthus hybridus HOM05D001046 ORTHO05D005883 1.1e-12 77.4 116 46.6
Cfa008799 Carpinus fangiana HOM05D001046 ORTHO05D005883 1.1e-12 77.4 55 72.7
Lalb_Chr04g0255081 Lupinus albus HOM05D001046 ORTHO05D005883 1.1e-12 77.4 50 76.0
Prupe.1G300500 Prunus persica HOM05D001046 ORTHO05D005883 1.1e-12 77.4 50 72.0
AL1G39580 Arabidopsis lyrata HOM05D001046 ORTHO05D005883 1.4e-12 77.0 55 69.1
CARHR025740 Cardamine hirsuta HOM05D001046 ORTHO05D005883 1.4e-12 77.0 55 69.1
AUR62002966 Chenopodium quinoa HOM05D001046 ORTHO05D005883 1.4e-12 77.0 50 74.0
AUR62007774 Chenopodium quinoa HOM05D001046 ORTHO05D005883 1.4e-12 77.0 50 74.0
Phvul.003G034100 Phaseolus vulgaris HOM05D001046 ORTHO05D005883 1.4e-12 77.0 50 76.0
ECA246G0060 Erigeron canadensis HOM05D001046 ORTHO05D005883 1.9e-12 76.6 50 74.0
Rhsim08G0040600 Rhododendron simsii HOM05D001046 ORTHO05D005883 1.9e-12 76.6 55 70.9
Actinidia30169 Actinidia chinensis HOM05D001046 ORTHO05D005883 2.4e-12 76.3 50 72.0
EL10Ac6g14562 Beta vulgaris HOM05D001046 ORTHO05D005883 2.4e-12 76.3 50 74.0
Hund25120 Selenicereus undatus HOM05D001046 ORTHO05D005883 2.4e-12 76.3 50 72.0
TAR629G1491 Trochodendron aralioides HOM05D001046 ORTHO05D005883 2.4e-12 76.3 50 70.0
GSVIVG01012023001 Vitis vinifera HOM05D001046 ORTHO05D005883 2.4e-12 76.3 50 72.0
Manes.06G076400 Manihot esculenta HOM05D001046 ORTHO05D005883 3.2e-12 75.9 55 69.1
QL03p044469 Quercus lobata HOM05D001046 ORTHO05D005883 3.2e-12 75.9 51 70.6
vmacro18368 Vaccinium macrocarpon HOM05D001046 ORTHO05D005883 3.2e-12 75.9 50 74.0
Gohir.A12G157800 Gossypium hirsutum HOM05D001046 ORTHO05D005883 4.1e-12 75.5 50 72.0
Gohir.D12G160700 Gossypium hirsutum HOM05D001046 ORTHO05D005883 4.1e-12 75.5 50 72.0
Gorai.008G173700 Gossypium raimondii HOM05D001046 ORTHO05D005883 4.1e-12 75.5 50 72.0
Lsat_1_v5_gn_3_62681 Lactuca sativa HOM05D001046 ORTHO05D005883 5.4e-12 75.1 50 72.0
Zm00001eb380420 Zea mays HOM05D001046 ORTHO05D005883 5.4e-12 75.1 50 70.0
Carub.0001s2479 Capsella rubella HOM05D001046 ORTHO05D005883 7.1e-12 74.7 55 65.5
VMungo1215G2127 Vigna mungo HOM05D001046 ORTHO05D005883 7.1e-12 74.7 49 75.5
Nn3g17629 Nelumbo nucifera HOM05D001046 ORTHO05D005883 9.2e-12 74.3 56 67.9
HanXRQChr15g0475941 Helianthus annuus HOM05D001046 ORTHO05D005883 1.2e-11 73.9 50 70.0
CANSAT64G1908 Cannabis sativa HOM05D001046 ORTHO05D005883 1.6e-11 73.6 50 74.0
arahy.Tifrunner.gnm1.ann1.L5PVB5 Arachis hypogaea HOM05D001046 ORTHO05D005883 2.1e-11 73.2 50 74.0
arahy.Tifrunner.gnm1.ann1.X1G7WL Arachis hypogaea HOM05D001046 ORTHO05D005883 2.1e-11 73.2 50 74.0
CiPaw.05G117600 Carya illinoinensis HOM05D001046 ORTHO05D005883 2.1e-11 73.2 82 54.9
SGA_v2.0_scaffold16G07861 Striga asiatica HOM05D001046 ORTHO05D005883 2.1e-11 73.2 50 68.0
unitig_699.g19897 Utricularia gibba HOM05D001046 ORTHO05D005883 2.1e-11 73.2 51 68.6
HPP92_018028 Vanilla planifolia HOM05D001046 ORTHO05D005883 2.1e-11 73.2 50 70.0
CSS0000214 Camellia sinensis var. sinensis HOM05D001046 ORTHO05D005883 4.6e-11 72.0 50 70.0
ClCG05G023270 Citrullus lanatus HOM05D001046 ORTHO05D005883 4.6e-11 72.0 55 70.9
MELO3C012192.2 Cucumis melo HOM05D001046 ORTHO05D005883 4.6e-11 72.0 55 70.9
PSO017G2748 Papaver somniferum HOM05D001046 ORTHO05D005883 4.6e-11 72.0 50 70.0
PSO478G0796 Papaver somniferum HOM05D001046 ORTHO05D005883 4.6e-11 72.0 50 70.0
CDE04G1715 Ceratophyllum demersum HOM05D001046 ORTHO05D005883 6.0e-11 71.6 50 70.0
FAN17G2519 Fragaria x ananassa HOM05D001046 ORTHO05D005883 6.0e-11 71.6 50 68.0
Sed0023728 Sechium edule HOM05D001046 ORTHO05D005883 6.0e-11 71.6 55 69.1
SEGI_13623 Sequoiadendron giganteum HOM05D001046 ORTHO05D005883 6.0e-11 71.6 51 64.7
CAN.G184.47 Capsicum annuum HOM05D001046 ORTHO05D005883 7.8e-11 71.2 50 68.0
FvH4_4g28521 Fragaria vesca HOM05D001046 ORTHO05D005883 7.8e-11 71.2 50 66.0
FAN07G2005 Fragaria x ananassa HOM05D001046 ORTHO05D005883 7.8e-11 71.2 50 66.0
FAN12G0380 Fragaria x ananassa HOM05D001046 ORTHO05D005883 7.8e-11 71.2 50 66.0
FAN22G0985 Fragaria x ananassa HOM05D001046 ORTHO05D005883 7.8e-11 71.2 50 66.0
RcHm_v2.0_Chr4g0436541 Rosa chinensis HOM05D001046 ORTHO05D005883 7.8e-11 71.2 50 66.0
CsaV3_5G033760 Cucumis sativus L. HOM05D001046 ORTHO05D005883 1.0e-10 70.9 55 69.1
Nitab4.5_0000259g0330 Nicotiana tabacum HOM05D001046 ORTHO05D005883 1.0e-10 70.9 50 68.0
Peaxi162Scf00188g00433 Petunia axillaris HOM05D001046 ORTHO05D005883 1.3e-10 70.5 50 68.0
Solyc05g010160.3 Solanum lycopersicum HOM05D001046 ORTHO05D005883 1.3e-10 70.5 50 68.0
Sopen05g005940 Solanum pennellii HOM05D001046 ORTHO05D005883 1.3e-10 70.5 50 68.0
Nitab4.5_0006347g0030 Nicotiana tabacum HOM05D001046 ORTHO05D005883 1.7e-10 70.1 50 68.0
Sabra08G0083000 Salix brachista HOM05D001046 ORTHO05D005883 1.7e-10 70.1 50 66.0
Duzib248G1558 Durio zibethinus HOM05D001046 ORTHO05D005883 2.3e-10 69.7 50 68.0
Mapoly0176s0015 Marchantia polymorpha HOM05D001046 ORTHO05D005883 3.0e-10 69.3 50 66.0
Aqoxy3G00421 Aquilegia oxysepala HOM05D001046 ORTHO05D005883 3.9e-10 68.9 50 62.0
TWI79G0779 Tripterygium wilfordii HOM05D001046 ORTHO05D005883 3.9e-10 68.9 50 70.0
Cc11_g11040 Coffea canephora HOM05D001046 ORTHO05D005883 5.1e-10 68.6 50 66.0
PGR102G1932 Punica granatum HOM05D001046 ORTHO05D005883 8.6e-10 67.8 50 64.0
Sc14g0007590 Simmondsia chinensis HOM05D001046 ORTHO05D005883 8.6e-10 67.8 50 60.0
DCAR_023709 Daucus carota HOM05D001046 ORTHO05D005883 2.5e-09 66.2 52 63.5
Ciclev10030592m.g Citrus clementina HOM05D001046 ORTHO05D005883 4.3e-09 65.5 50 70.0
ATR0691G253 Amborella trichopoda HOM05D001046 ORTHO05D005883 5.6e-09 65.1 50 60.0
Potri.008G109300 Populus trichocarpa HOM05D001046 ORTHO05D005883 9.5e-09 64.3 50 62.0
Potri.T108626 Populus trichocarpa HOM05D001046 ORTHO05D005883 9.5e-09 64.3 50 62.0
Lj4g0014353 Lotus japonicus HOM05D003157 ORTHO05D004447 2.8e-08 62.8 53 66.0
Atru.chr11.1438 Acer truncatum HOM05D001046 ORTHO05D005883 3.6e-08 62.4 50 64.0
Atru.chr11.1468 Acer truncatum HOM05D001046 ORTHO05D005883 3.6e-08 62.4 50 64.0
Thecc.03G025700 Theobroma cacao HOM05D003157 ORTHO05D004447 4.7e-08 62.0 105 42.9
Pp3c3_32130 Physcomitrium patens HOM05D001046 ORTHO05D005883 1.1e-07 60.8 50 58.0
Eucgr.B03078 Eucalyptus grandis HOM05D001046 ORTHO05D005883 3.1e-07 59.3 55 54.5
COL.COLO4_36761 Corchorus olitorius HOM05D003157 ORTHO05D004447 6.8e-07 58.2 115 34.8
CBR_g22326 Chara braunii HOM05D001046 ORTHO05D005883 8.9e-07 57.8 50 52.0
Gohir.D03G106700 Gossypium hirsutum HOM05D003157 ORTHO05D004447 2.6e-06 56.2 92 40.2
Gorai.003G115800 Gossypium raimondii HOM05D003157 ORTHO05D004447 2.6e-06 56.2 92 40.2
CBR_g23906 Chara braunii HOM05D001046 ORTHO05D005883 3.4e-06 55.8 78 39.7
VMungo1215G0567 Vigna mungo HOM05D003157 ORTHO05D004447 7.6e-06 54.7 91 50.5


User provided reference genes

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