Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g049600 Pisum sativum HOM05D006034 ORTHO05D007535 5.1e-139 497.7 240 100.0
Medtr4g036675 Medicago truncatula HOM05D006034 ORTHO05D007535 8.5e-126 453.8 240 90.0
TPR.G35498 Trifolium pratense HOM05D006034 ORTHO05D007535 1.8e-123 446.0 240 90.0
Glyma.07G128800 Glycine max HOM05D006034 ORTHO05D007535 1.4e-120 436.4 240 85.4
Lj2g0022455 Lotus japonicus HOM05D006034 ORTHO05D007535 5.9e-119 431.0 238 85.7
Lalb_Chr24g0393801 Lupinus albus HOM05D006034 ORTHO05D007535 3.8e-110 401.7 233 82.0
VMungo0464G0679 Vigna mungo HOM05D006034 ORTHO05D007535 4.2e-109 398.3 238 79.4
arahy.Tifrunner.gnm1.ann1.JYMB6X Arachis hypogaea HOM05D006034 ORTHO05D007535 6.3e-105 384.4 240 77.9
arahy.Tifrunner.gnm1.ann1.VJWZ4U Arachis hypogaea HOM05D006034 ORTHO05D007535 6.3e-105 384.4 240 77.5
TAR636G0081 Trochodendron aralioides HOM05D006034 ORTHO05D007535 9.1e-104 380.6 238 74.4
GSVIVG01015225001 Vitis vinifera HOM05D006034 ORTHO05D007535 4.5e-103 378.3 240 73.8
COL.COLO4_18220 Corchorus olitorius HOM05D006034 ORTHO05D001756 7.7e-103 377.5 240 73.8
Cc06_g11190 Coffea canephora HOM05D006034 ORTHO05D007535 5.0e-102 374.8 236 73.3
Ciclev10008848m.g Citrus clementina HOM05D006034 ORTHO05D007535 5.5e-101 371.3 240 74.6
Gohir.D06G070100 Gossypium hirsutum HOM05D006034 ORTHO05D007535 8.0e-100 367.5 240 72.5
MD02G1076200 Malus domestica HOM05D006034 ORTHO05D007535 1.0e-99 367.1 240 73.3
Gorai.010G081700 Gossypium raimondii HOM05D006034 ORTHO05D007535 1.4e-99 366.7 240 72.9
PGSC0003DMG400000341 Solanum tuberosum HOM05D006034 ORTHO05D007535 3.0e-99 365.5 240 71.2
MELO3C015455.2 Cucumis melo HOM05D006034 ORTHO05D007535 8.8e-99 364.0 237 70.5
ECA234G0840 Erigeron canadensis HOM05D006034 ORTHO05D001756 1.2e-98 363.6 240 71.2
Gohir.A06G071400 Gossypium hirsutum HOM05D006034 ORTHO05D007535 1.2e-98 363.6 240 71.7
SGA_v2.0_scaffold62G21594 Striga asiatica HOM05D006034 ORTHO05D007535 2.8e-97 359.0 240 69.6
Migut.J00593 Erythranthe guttata HOM05D006034 ORTHO05D007535 8.3e-97 357.5 239 69.9
Potri.006G150200 Populus trichocarpa HOM05D006034 ORTHO05D007535 1.4e-96 356.7 240 71.2
Sed0009633 Sechium edule HOM05D006034 ORTHO05D007535 1.4e-96 356.7 240 69.2
MD15G1204600 Malus domestica HOM05D006034 ORTHO05D007535 7.0e-96 354.4 230 73.5
RcHm_v2.0_Chr2g0093061 Rosa chinensis HOM05D006034 ORTHO05D007535 7.0e-96 354.4 240 68.3
HanXRQChr12g0354751 Helianthus annuus HOM05D006034 ORTHO05D007535 9.2e-96 354.0 240 69.6
Lsat_1_v5_gn_5_145641 Lactuca sativa HOM05D006034 ORTHO05D007535 1.2e-95 353.6 240 70.4
Prupe.7G212400 Prunus persica HOM05D006034 ORTHO05D007535 3.5e-95 352.1 240 70.4
FvH4_1g22100 Fragaria vesca HOM05D006034 ORTHO05D007535 1.7e-94 349.7 240 67.5
FAN19G2130 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.7e-94 349.7 240 67.5
FAN26G1667 Fragaria x ananassa HOM05D006034 ORTHO05D007535 6.6e-94 347.8 240 67.5
QL02p062983 Quercus lobata HOM05D006034 ORTHO05D007535 1.5e-93 346.7 236 69.9
CAN.G1241.18 Capsicum annuum HOM05D006034 ORTHO05D007535 2.5e-93 345.9 240 68.8
Sopen12g003720 Solanum pennellii HOM05D006034 ORTHO05D007535 2.5e-93 345.9 238 67.6
AUR62031326 Chenopodium quinoa HOM05D006034 ORTHO05D007535 9.5e-93 344.0 238 66.0
Eucgr.C00910 Eucalyptus grandis HOM05D006034 ORTHO05D007535 2.8e-92 342.4 238 68.5
FAN23G1099 Fragaria x ananassa HOM05D006034 ORTHO05D007535 6.1e-92 341.3 239 66.5
CiPaw.03G217800 Carya illinoinensis HOM05D006034 ORTHO05D007535 1.0e-91 340.5 240 68.8
Aqoxy7G04066 Aquilegia oxysepala HOM05D006034 ORTHO05D007535 1.8e-91 339.7 236 68.2
THA.LOC104807985 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 5.2e-91 338.2 268 63.4
Glyma.01G003200 Glycine max HOM05D006034 ORTHO05D007535 6.8e-91 337.8 206 76.7
SEGI_04673 Sequoiadendron giganteum HOM05D006034 ORTHO05D007535 8.9e-91 337.4 234 65.8
Lj7C673T11 Lonicera japonica HOM05D006034 ORTHO05D007535 1.5e-90 336.7 240 66.7
PSO210G3620 Papaver somniferum HOM05D006034 ORTHO05D007535 1.3e-89 333.6 239 64.9
Manes.03G032201 Manihot esculenta HOM05D006034 ORTHO05D007535 1.7e-89 333.2 240 65.0
PSO210G1139 Papaver somniferum HOM05D006034 ORTHO05D007535 2.9e-89 332.4 239 64.9
HPP92_023401 Vanilla planifolia HOM05D006034 ORTHO05D007535 4.6e-87 325.1 235 64.3
Mapoly0014s0071 Marchantia polymorpha HOM05D006034 ORTHO05D007535 2.3e-86 322.8 237 61.6
TWI32G0461 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 6.6e-86 321.2 200 76.5
Os01g0722100 Oryza sativa ssp. japonica HOM05D006034 ORTHO05D007535 6.2e-84 314.7 237 63.3
SMO118G0489 Selaginella moellendorffii HOM05D006034 ORTHO05D007535 6.2e-84 314.7 236 61.4
CsaV3_1G040270 Cucumis sativus L. HOM05D006034 ORTHO05D007535 8.0e-84 314.3 200 72.0
Pp3c5_18660 Physcomitrium patens HOM05D006034 ORTHO05D007535 1.4e-83 313.5 237 61.2
MSTRG.19527 Avicennia marina HOM05D006034 ORTHO05D007535 2.0e-82 309.7 205 70.2
Zm00001eb361670 Zea mays HOM05D006034 ORTHO05D007535 2.0e-82 309.7 239 62.8
PGR142G3838 Punica granatum HOM05D006034 ORTHO05D007535 1.7e-81 306.6 240 62.9
Actinidia25263 Actinidia chinensis HOM05D006034 ORTHO05D007535 8.3e-81 304.3 211 67.8
ATR0705G153 Amborella trichopoda HOM05D006034 ORTHO05D007535 1.1e-80 303.9 232 61.2
Oeu021834.2 Olea europaea HOM05D006034 ORTHO05D007535 2.4e-80 302.8 240 61.2
BcaC01g01176 Brassica carinata HOM05D006034 ORTHO05D007535 2.7e-79 299.3 240 62.9
BolC3t21232H Brassica oleracea HOM05D006034 ORTHO05D007535 2.7e-79 299.3 240 63.3
C03p89230 Brassica napus HOM05D006034 ORTHO05D007535 7.8e-79 297.7 240 62.9
Carub.0007s1101 Capsella rubella HOM05D006034 ORTHO05D007535 3.9e-78 295.4 240 61.2
Sp7g27400 Schrenkiella parvula HOM05D006034 ORTHO05D007535 3.9e-78 295.4 240 62.5
CARHR237370 Cardamine hirsuta HOM05D006034 ORTHO05D007535 6.6e-78 294.7 240 61.2
FAN28G0362 Fragaria x ananassa HOM05D006034 ORTHO05D007535 3.3e-77 292.4 193 69.9
A08p19610 Brassica napus HOM05D006034 ORTHO05D007535 4.3e-77 292.0 240 61.7
BraA08t33919Z Brassica rapa HOM05D006034 ORTHO05D007535 5.6e-77 291.6 240 61.7
AL7G22860 Arabidopsis lyrata HOM05D006034 ORTHO05D007535 9.5e-77 290.8 236 61.0
BcaB03g12611 Brassica carinata HOM05D006034 ORTHO05D007535 1.2e-76 290.4 240 60.8
Sabra06G0118900 Salix brachista HOM05D006034 ORTHO05D007535 2.8e-76 289.3 240 60.4
CBR_g36936 Chara braunii HOM05D006034 ORTHO05D007535 3.1e-75 285.8 236 59.3
SalBow6G0258 Salvia bowleyana HOM05D006034 ORTHO05D007535 6.8e-75 284.6 240 59.6
Thecc.09G091900 Theobroma cacao HOM05D006034 ORTHO05D007535 6.8e-75 284.6 206 66.5
THA.LOC104827538 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 2.6e-74 282.7 241 58.9
Ca_25619_v3 Cicer arietinum L. HOM05D006034 ORTHO05D007535 2.9e-73 279.3 137 95.6
Hma1.2p1_0800F.1_g219990 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 1.9e-72 276.6 171 74.9
Aa31LG2G20940 Aethionema arabicum HOM05D006034 ORTHO05D007535 6.6e-70 268.1 283 52.3
Duzib150G0162 Durio zibethinus HOM05D006034 ORTHO05D007535 8.6e-70 267.7 209 64.1
AagrBONN_evm.TU.Sc2ySwM_228.1841 Anthoceros agrestis HOM05D006034 ORTHO05D007535 1.5e-69 266.9 263 52.5
BcaC09g51741 Brassica carinata HOM05D000577 ORTHO05D007535 1.1e-67 260.8 241 56.0
EL10Ac8g19307 Beta vulgaris HOM05D006034 ORTHO05D007535 6.8e-67 258.1 175 68.6
Solyc12g008790.3 Solanum lycopersicum HOM05D006034 ORTHO05D007535 3.8e-65 252.3 171 68.4
ClCG03G015740 Citrullus lanatus HOM05D000085 ORTHO05D001756 2.3e-62 243.0 240 52.1
Phvul.004G171500 Phaseolus vulgaris HOM05D006034 ORTHO05D007535 3.0e-62 242.7 136 82.4
CsaV3_UNG066530 Cucumis sativus L. HOM05D006034 ORTHO05D007535 8.1e-60 234.6 137 75.2
Atru.chr7.1566 Acer truncatum HOM05D006034 ORTHO05D007535 2.1e-55 219.9 172 62.8
AUR62027411 Chenopodium quinoa HOM05D006034 ORTHO05D007535 3.5e-55 219.2 190 55.3
Sed0024135 Sechium edule HOM05D006034 ORTHO05D007535 3.5e-55 219.2 137 71.5
Thhalv10025613m.g Eutrema salsugineum HOM05D006034 ORTHO05D007535 1.7e-54 216.9 230 52.6
vmacro17221 Vaccinium macrocarpon HOM05D006034 ORTHO05D007535 8.7e-54 214.5 240 46.7
Nn8g38904 Nelumbo nucifera HOM05D006034 ORTHO05D007535 1.3e-52 210.7 240 46.7
Haze_25892 Corylus avellana HOM05D006034 ORTHO05D007535 1.6e-52 210.3 240 49.2
Nitab4.5_0000540g0250 Nicotiana tabacum HOM05D006034 ORTHO05D007535 3.6e-52 209.1 234 48.3
CDE05G1399 Ceratophyllum demersum HOM05D006034 ORTHO05D007535 1.1e-51 207.6 233 45.9
Nitab4.5_0011903g0020 Nicotiana tabacum HOM05D006034 ORTHO05D007535 5.8e-50 201.8 239 46.4
MD13G1273400 Malus domestica HOM05D006034 ORTHO05D007535 6.4e-49 198.4 157 62.4
PRCOL_00006271 Prasinoderma coloniale HOM05D006034 ORTHO05D007535 2.7e-47 193.0 234 44.4
Hund24744 Selenicereus undatus HOM05D006034 ORTHO05D007535 4.6e-47 192.2 289 40.8
THA.LOC104814611 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 1.5e-45 187.2 132 72.0
TWI34G0201 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 1.6e-44 183.7 107 77.6
Hma1.2p1_0800F.1_g219980 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 4.8e-44 182.2 108 78.7
Sc18g0001930 Simmondsia chinensis HOM05D006034 ORTHO05D007535 4.0e-43 179.1 171 52.6
C01p09780 Brassica napus HOM05D006034 ORTHO05D007535 2.0e-42 176.8 172 54.7
Rhsim05G0022600 Rhododendron simsii HOM05D000085 ORTHO05D001756 7.6e-42 174.9 238 42.4
DCAR_011988 Daucus carota HOM05D006034 ORTHO05D007535 1.2e-34 151.0 235 38.7
Peaxi162Scf00498g00128 Petunia axillaris HOM05D006034 ORTHO05D007535 4.5e-34 149.1 108 65.7
MBI01_g02257_MAGBIO Magnolia biondii HOM05D006034 ORTHO05D007535 2.2e-33 146.7 239 37.7
arahy.Tifrunner.gnm1.ann1.ZF8ARW Arachis hypogaea HOM05D006034 ORTHO05D007535 2.9e-33 146.4 91 76.9
arahy.Tifrunner.gnm1.ann1.N9NTP8 Arachis hypogaea HOM05D000344 ORTHO05D005296 4.9e-33 145.6 91 78.0
arahy.Tifrunner.gnm1.ann1.9T8A1S Arachis hypogaea HOM05D006034 ORTHO05D007535 2.1e-31 140.2 91 73.6
arahy.Tifrunner.gnm1.ann1.4X02I9 Arachis hypogaea HOM05D006034 ORTHO05D007535 1.0e-30 137.9 91 73.6
CSS0007101 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 3.0e-30 136.3 105 65.7
C01p09940 Brassica napus HOM05D000577 ORTHO05D007535 1.1e-29 134.4 241 39.0
BcaC09g52218 Brassica carinata HOM05D006034 ORTHO05D007535 4.8e-28 129.0 114 60.5
Ca_29456_v3 Cicer arietinum L. HOM05D003386 ORTHO05D007535 8.2e-28 128.3 220 37.3
C01p09900 Brassica napus HOM05D006034 ORTHO05D007535 3.1e-27 126.3 118 57.6
CSS0015474 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 4.2e-24 115.9 123 46.3
AT4G29540 Arabidopsis thaliana HOM05D006034 ORTHO05D007535 3.0e-22 109.8 71 71.8
BolC1t00956H Brassica oleracea HOM05D000577 ORTHO05D001093 3.0e-22 109.8 241 35.7
THA.LOC109116077 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 3.9e-22 109.4 112 50.9
arahy.Tifrunner.gnm1.ann1.UHY7MZ Arachis hypogaea HOM05D006034 ORTHO05D005279 3.7e-20 102.8 97 58.8
Haze_27155 Corylus avellana HOM05D003386 ORTHO05D007535 8.2e-20 101.7 230 32.6
MD17G1181800 Malus domestica HOM05D006034 ORTHO05D007535 8.2e-20 101.7 62 75.8
Hma1.2p1_0800F.1_g220000 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 1.9e-16 90.5 68 63.2
arahy.Tifrunner.gnm1.ann1.RIAB4B Arachis hypogaea HOM05D006034 ORTHO05D007535 5.5e-16 89.0 50 84.0
CsaV3_UNG066540 Cucumis sativus L. HOM05D006034 ORTHO05D007535 1.1e-13 81.3 65 58.5
arahy.Tifrunner.gnm1.ann1.C7GQ4M Arachis hypogaea HOM05D006034 ORTHO05D007535 7.4e-13 78.6 63 61.9
BolC1t00940H Brassica oleracea HOM05D006034 ORTHO05D007535 4.2e-08 62.8 55 56.4
unitig_27.g24727 Utricularia gibba HOM05D006034 ORTHO05D007535 4.2e-08 62.8 56 50.0
Dinv36751 Davidia involucrata HOM05D006034 ORTHO05D007535 1.6e-07 60.8 54 50.0


User provided reference genes

Program Settings