Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g048160 Pisum sativum HOM05D007850 ORTHO05D009594 4.5e-36 154.1 77 100.0
Ca_25585_v3 Cicer arietinum L. HOM05D007850 ORTHO05D009594 1.4e-29 132.5 77 85.7
TPR.G33528 Trifolium pratense HOM05D007850 ORTHO05D009594 4.5e-28 127.5 80 83.8
Glyma.01G006200 Glycine max HOM05D007850 ORTHO05D009594 2.5e-23 111.7 77 74.0
Glyma.07G125500 Glycine max HOM05D007850 ORTHO05D009594 7.4e-23 110.2 77 72.7
arahy.Tifrunner.gnm1.ann1.X02Y3Q Arachis hypogaea HOM05D007850 ORTHO05D009594 9.6e-23 109.8 78 74.4
Lalb_Chr22g0352511 Lupinus albus HOM05D007850 ORTHO05D009594 2.1e-22 108.6 81 71.6
Phvul.004G174800 Phaseolus vulgaris HOM05D007850 ORTHO05D009594 6.3e-22 107.1 77 74.0
Lj2g0008653 Lotus japonicus HOM05D007850 ORTHO05D009594 2.4e-21 105.1 78 73.1
arahy.Tifrunner.gnm1.ann1.X1KXE8 Arachis hypogaea HOM05D012186 ORTHO05D009594 2.0e-20 102.1 73 74.0
Haze_25835 Corylus avellana HOM05D007850 ORTHO05D009594 2.9e-19 98.2 75 68.0
Manes.03G028100 Manihot esculenta HOM05D007850 ORTHO05D009594 6.5e-19 97.1 75 65.3
Cfa003164 Carpinus fangiana HOM05D007850 ORTHO05D009594 1.4e-18 95.9 74 67.6
Gohir.D08G264200 Gossypium hirsutum HOM05D007850 ORTHO05D009594 4.2e-18 94.4 80 63.8
Gorai.004G282100 Gossypium raimondii HOM05D007850 ORTHO05D009594 4.2e-18 94.4 80 63.8
Medtr6g090490 Medicago truncatula HOM05D007850 ORTHO05D009594 4.2e-18 94.4 77 72.7
Potri.015G106700 Populus trichocarpa HOM05D007850 ORTHO05D009594 5.5e-18 94.0 77 64.9
Cpa.g.sc78.26 Carica papaya HOM05D007850 ORTHO05D009594 1.2e-17 92.8 74 67.6
Gohir.A06G068000 Gossypium hirsutum HOM05D007850 ORTHO05D009594 1.2e-17 92.8 75 62.7
Sabra12G0079700 Salix brachista HOM05D007850 ORTHO05D009594 1.6e-17 92.4 72 63.9
Duzib168G0149 Durio zibethinus HOM05D007850 ORTHO05D009594 2.1e-17 92.0 73 65.8
Gohir.A08G243300 Gossypium hirsutum HOM05D007850 ORTHO05D009594 2.1e-17 92.0 80 62.5
Hma1.2p1_0208F.1_g088080 Hydrangea macrophylla HOM05D007850 ORTHO05D009594 6.1e-17 90.5 75 64.0
Thecc.09G099000 Theobroma cacao HOM05D007850 ORTHO05D009594 6.1e-17 90.5 73 64.4
MELO3C015421.2 Cucumis melo HOM05D007850 ORTHO05D009594 2.3e-16 88.6 76 64.5
QL08p048105 Quercus lobata HOM05D007850 ORTHO05D009594 2.3e-16 88.6 77 63.6
Gohir.D07G009300 Gossypium hirsutum HOM05D007850 ORTHO05D009594 3.0e-16 88.2 73 63.0
Gorai.001G009500 Gossypium raimondii HOM05D007850 ORTHO05D009594 3.0e-16 88.2 73 63.0
Gohir.A07G009000 Gossypium hirsutum HOM05D007850 ORTHO05D009594 5.1e-16 87.4 73 63.0
Gohir.D06G066600 Gossypium hirsutum HOM05D007850 ORTHO05D009594 5.1e-16 87.4 75 61.3
ClCG03G016060 Citrullus lanatus HOM05D007850 ORTHO05D009594 6.7e-16 87.0 76 63.2
Nn8g39046 Nelumbo nucifera HOM05D007850 ORTHO05D009594 1.5e-15 85.9 77 58.4
Gorai.010G078100 Gossypium raimondii HOM05D007850 ORTHO05D009594 2.5e-15 85.1 75 60.0
Actinidia17514 Actinidia chinensis HOM05D007850 ORTHO05D009594 5.7e-15 84.0 73 58.9
TAR624G0098 Trochodendron aralioides HOM05D007850 ORTHO05D009594 5.7e-15 84.0 77 57.1
FAN26G0602 Fragaria x ananassa HOM05D007850 ORTHO05D009594 1.3e-14 82.8 74 59.5
FAN26G2005 Fragaria x ananassa HOM05D007850 ORTHO05D009594 1.3e-14 82.8 74 59.5
Prupe.7G218200 Prunus persica HOM05D007850 ORTHO05D009594 1.3e-14 82.8 79 60.8
FAN28G1089 Fragaria x ananassa HOM05D007850 ORTHO05D009594 1.6e-14 82.4 74 59.5
QL03p050300 Quercus lobata HOM05D007850 ORTHO05D009594 1.6e-14 82.4 77 61.0
FAN23G2338 Fragaria x ananassa HOM05D007850 ORTHO05D009594 2.2e-14 82.0 73 57.5
FvH4_1g06390 Fragaria vesca HOM05D007850 ORTHO05D009594 2.8e-14 81.6 74 58.1
FAN19G1200 Fragaria x ananassa HOM05D007850 ORTHO05D009594 2.8e-14 81.6 74 58.1
CANSAT56G2953 Cannabis sativa HOM05D007850 ORTHO05D009594 4.8e-14 80.9 72 59.7
Eucgr.K01055 Eucalyptus grandis HOM05D007850 ORTHO05D009594 6.3e-14 80.5 75 58.7
Cc06_g10600 Coffea canephora HOM05D007850 ORTHO05D009594 1.4e-13 79.3 72 61.1
Nitab4.5_0003079g0010 Nicotiana tabacum HOM05D007850 ORTHO05D009594 1.4e-13 79.3 74 59.5
SalBow6G1226 Salvia bowleyana HOM05D007850 ORTHO05D009594 1.4e-13 79.3 77 58.4
RcHm_v2.0_Chr2g0092131 Rosa chinensis HOM05D007850 ORTHO05D009594 2.4e-13 78.6 74 56.8
Peaxi162Scf00944g00009 Petunia axillaris HOM05D007850 ORTHO05D009594 4.1e-13 77.8 75 53.3
arahy.Tifrunner.gnm1.ann1.1KH3J5 Arachis hypogaea HOM05D007850 ORTHO05D009594 6.9e-13 77.0 76 57.9
arahy.Tifrunner.gnm1.ann1.THK1KM Arachis hypogaea HOM05D007850 ORTHO05D009594 6.9e-13 77.0 76 57.9
Nitab4.5_0000566g0200 Nicotiana tabacum HOM05D007850 ORTHO05D009594 6.9e-13 77.0 74 56.8
Solyc12g008560.1 Solanum lycopersicum HOM05D007850 ORTHO05D009594 1.2e-12 76.3 74 59.5
Rhsim05G0038300 Rhododendron simsii HOM05D007850 ORTHO05D009594 1.5e-12 75.9 78 53.8
COL.COLO4_34726 Corchorus olitorius HOM05D007850 ORTHO05D009594 3.4e-12 74.7 54 66.7
Ciclev10010071m.g Citrus clementina HOM05D007850 ORTHO05D009594 4.5e-12 74.3 74 54.1
DCAR_012035 Daucus carota HOM05D007850 ORTHO05D009594 1.0e-11 73.2 80 55.0
CSS0000041 Camellia sinensis var. sinensis HOM05D007850 ORTHO05D009594 1.7e-11 72.4 71 56.3
PGSC0003DMG400000292 Solanum tuberosum HOM05D007850 ORTHO05D009594 1.7e-11 72.4 74 56.8
DCAR_000091 Daucus carota HOM05D007850 ORTHO05D009594 2.2e-11 72.0 80 55.0
DCAR_012032 Daucus carota HOM05D007850 ORTHO05D009594 2.2e-11 72.0 80 55.0
Aqoxy7G01385 Aquilegia oxysepala HOM05D007850 ORTHO05D009594 3.8e-11 71.2 74 59.5
Ciclev10006350m.g Citrus clementina HOM05D007850 ORTHO05D009594 3.8e-11 71.2 82 51.2
Sed0003200 Sechium edule HOM05D007850 ORTHO05D009594 1.1e-10 69.7 75 54.7
CsaV3_1G039900 Cucumis sativus L. HOM05D007850 ORTHO05D009594 4.2e-10 67.8 54 68.5
Sopen12g003500 Solanum pennellii HOM05D007850 ORTHO05D009594 4.2e-10 67.8 73 53.4
AUR62010878 Chenopodium quinoa HOM05D007850 ORTHO05D009594 1.2e-09 66.2 77 53.2
EL10Ac8g18368 Beta vulgaris HOM05D007850 ORTHO05D009594 1.6e-09 65.9 71 54.9
Lsat_1_v5_gn_7_39541 Lactuca sativa HOM05D007850 ORTHO05D009594 1.6e-09 65.9 55 63.6
Sc18g0001560 Simmondsia chinensis HOM05D007850 ORTHO05D009594 2.1e-09 65.5 72 52.8
AUR62021391 Chenopodium quinoa HOM05D007850 ORTHO05D009594 3.6e-09 64.7 77 51.9
ATR0705G131 Amborella trichopoda HOM05D007850 ORTHO05D009594 4.6e-09 64.3 69 49.3
CAN.G1591.18 Capsicum annuum HOM05D007850 ORTHO05D009594 1.8e-08 62.4 76 51.3
CAN.G2021.4 Capsicum annuum HOM05D007850 ORTHO05D009594 1.8e-08 62.4 76 51.3
CAN.G1357.32 Capsicum annuum HOM05D007850 ORTHO05D009594 2.6e-07 58.5 76 50.0
CAN.G1677.12 Capsicum annuum HOM05D007850 ORTHO05D009594 2.6e-07 58.5 76 48.7
unitig_8.g4473 Utricularia gibba HOM05D007850 ORTHO05D009594 3.3e-07 58.2 67 49.3
CAN.G1084.1 Capsicum annuum HOM05D007850 ORTHO05D009594 5.7e-07 57.4 76 48.7
CAN.G1349.15 Capsicum annuum HOM05D007850 ORTHO05D009594 1.3e-06 56.2 76 48.7
ECA240G2374 Erigeron canadensis HOM05D004751 ORTHO05D005819 3.7e-06 54.7 67 49.3
Zm00001eb283490 Zea mays HOM05D058780 ORTHO05D009594 4.8e-06 54.3 57 54.4
Ah.09g230500 Amaranthus hybridus HOM05D007850 ORTHO05D009594 8.2e-06 53.5 78 46.2


User provided reference genes

Program Settings