Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 0.0e+00 1206.4 708 100.0
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 1.6e-268 929.5 704 83.5
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 5.9e-268 927.5 702 82.1
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 7.7e-268 927.2 700 76.0
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 1.1e-266 923.3 700 75.9
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 3.7e-262 908.3 707 81.3
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 2.0e-252 875.9 702 77.9
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 6.2e-249 864.4 704 72.4
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 1.2e-239 833.6 704 71.6
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 7.1e-237 824.3 698 69.6
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 1.0e-227 793.9 698 68.3
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.4e-216 756.9 698 68.1
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 2.6e-215 752.7 730 66.0
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 3.9e-211 738.8 707 65.8
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 9.6e-210 734.2 703 63.6
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 1.4e-205 720.3 706 64.6
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 4.6e-204 715.3 705 63.8
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 5.1e-203 711.8 723 62.7
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 2.5e-202 709.5 704 62.9
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 2.5e-202 709.5 715 63.8
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 7.4e-202 708.0 705 63.1
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 7.4e-202 708.0 711 62.4
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 6.2e-201 704.9 710 63.1
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.8e-200 703.4 722 60.9
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 5.3e-200 701.8 704 62.4
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 6.9e-200 701.4 750 59.6
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 9.0e-200 701.0 711 63.2
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 1.3e-198 697.2 714 62.9
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 4.9e-198 695.3 714 62.0
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 1.5e-194 683.7 704 61.5
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 7.4e-194 681.4 708 60.9
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.1e-193 679.9 721 60.3
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 5.3e-192 675.2 707 60.5
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 6.9e-192 674.9 709 60.8
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 6.9e-192 674.9 717 61.2
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 3.4e-191 672.5 709 60.2
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 4.5e-191 672.2 713 60.0
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.5e-189 666.4 705 59.6
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 5.5e-189 665.2 709 60.2
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 7.2e-189 664.8 622 65.0
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 9.3e-189 664.5 709 59.7
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 4.6e-188 662.1 703 59.3
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 1.1e-186 657.5 583 66.9
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 1.1e-186 657.5 731 56.8
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 1.9e-186 656.8 705 59.4
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.2e-183 647.5 705 59.3
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 2.0e-183 646.7 716 57.5
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 4.5e-183 645.6 703 58.3
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 5.5e-181 638.6 709 58.7
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 7.9e-180 634.8 703 58.0
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 2.3e-179 633.3 718 57.4
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 6.7e-179 631.7 718 57.2
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 2.5e-178 629.8 717 57.2
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 2.5e-178 629.8 704 58.5
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 4.3e-178 629.0 726 56.7
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 7.4e-178 628.2 716 56.8
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 3.7e-177 625.9 736 57.3
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 4.8e-177 625.5 717 56.9
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 1.2e-175 620.9 726 57.0
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 2.6e-175 619.8 734 58.9
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 5.9e-175 618.6 713 56.5
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 5.9e-175 618.6 726 56.9
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 1.3e-174 617.5 730 59.3
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 1.1e-173 614.4 716 55.7
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 3.2e-173 612.8 715 56.8
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 2.7e-172 609.8 712 57.0
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 6.1e-172 608.6 717 55.9
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 1.0e-171 607.8 758 54.4
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 1.4e-171 607.4 708 56.2
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 2.0e-170 603.6 707 55.7
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 3.7e-169 599.4 648 60.6
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 1.8e-168 597.0 736 59.1
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 3.1e-168 596.3 712 56.3
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 7.0e-168 595.1 749 54.1
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 3.5e-167 592.8 711 60.9
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 5.9e-167 592.0 730 54.4
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 4.7e-164 582.4 732 58.3
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 6.1e-164 582.0 704 54.8
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 6.1e-164 582.0 733 58.8
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 8.8e-163 578.2 736 58.2
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 1.5e-162 577.4 477 68.8
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 4.8e-161 572.4 728 53.6
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.4e-160 570.9 748 57.2
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 3.1e-160 569.7 719 54.4
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 1.2e-159 567.8 703 54.9
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 7.7e-159 565.1 701 54.6
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 2.2e-158 563.5 725 56.8
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 2.5e-157 560.1 714 53.6
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 2.7e-156 556.6 706 54.0
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 2.3e-155 553.5 721 53.8
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 4.0e-155 552.7 718 51.9
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 6.8e-155 552.0 732 53.3
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 8.8e-155 551.6 751 54.9
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 8.8e-155 551.6 707 53.0
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 1.3e-153 547.7 629 59.6
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 2.4e-152 543.5 719 52.3
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 2.7e-151 540.0 704 52.8
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 1.7e-150 537.3 763 50.5
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 3.8e-150 536.2 708 51.8
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 8.8e-147 525.0 748 54.5
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.2e-146 524.6 793 47.7
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 5.9e-143 512.3 380 74.2
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 2.2e-137 493.8 690 50.1
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 5.9e-135 485.7 751 48.1
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 2.3e-134 483.8 728 47.0
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 6.2e-132 475.7 609 54.5
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 9.5e-125 451.8 451 62.1
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 8.9e-123 445.3 656 50.2
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 2.0e-106 391.0 527 52.8
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 3.8e-97 360.1 503 53.3
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 3.2e-96 357.1 503 53.1
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 3.7e-92 343.6 706 39.5
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 2.4e-91 340.9 229 80.3
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 1.7e-89 334.7 236 78.4
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.2e-82 312.0 211 80.6
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.2e-82 312.0 211 80.6
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 9.3e-80 302.4 231 71.9
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 2.3e-78 297.7 231 72.7
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 1.3e-73 282.0 186 79.6
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 8.2e-68 262.7 507 40.4
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.3e-65 255.4 301 56.5
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 9.4e-64 249.2 171 77.8
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 6.1e-63 246.5 426 45.3
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 6.7e-62 243.0 446 50.4
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 1.9e-56 224.9 429 44.3
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 2.2e-52 211.5 136 80.1
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 1.9e-48 198.4 641 32.1
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 2.7e-47 194.5 354 43.5
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 3.8e-41 174.1 507 33.9
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 1.5e-37 162.2 208 54.8
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 7.0e-35 153.3 407 36.6
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 8.0e-31 139.8 86 89.5
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 1.3e-28 132.5 93 71.0
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 1.0e-25 122.9 195 59.0
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 1.9e-24 118.6 243 38.7
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 8.0e-23 113.2 212 42.0
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.3e-22 111.7 70 85.7
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.3e-22 111.7 70 85.7
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.5e-21 109.0 72 80.6
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.0e-21 108.6 109 61.5
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 6.4e-20 103.6 70 84.3
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 5.4e-19 100.5 296 34.5
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 2.9e-12 78.2 65 66.2
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 1.3e-09 69.3 447 24.8
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 3.3e-08 64.7 49 77.6
C07p01440 Brassica napus HOM05D004485 ORTHO05D005485 7.3e-08 63.5 157 37.6
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 3.6e-07 61.2 325 24.3
BraA07t27870Z Brassica rapa HOM05D004485 ORTHO05D005485 6.2e-07 60.5 64 62.5
Lsat_1_v5_gn_8_144040 Lactuca sativa HOM05D004897 ORTHO05D005928 1.1e-06 59.7 301 24.9
Lalb_Chr16g0387081 Lupinus albus HOM05D004897 ORTHO05D005928 1.1e-06 59.7 305 23.9
CDE05G2998 Ceratophyllum demersum HOM05D004897 ORTHO05D005928 1.4e-06 59.3 341 25.2
Lj4g0010445 Lotus japonicus HOM05D004897 ORTHO05D005928 2.3e-06 58.5 305 24.9
Glyma.08G053300 Glycine max HOM05D004897 ORTHO05D005928 6.8e-06 57.0 307 23.5
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 6.8e-06 57.0 303 24.4
RcHm_v2.0_Chr7g0178571 Rosa chinensis HOM05D004897 ORTHO05D005928 6.8e-06 57.0 305 25.2
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 8.9e-06 56.6 303 24.4


User provided reference genes

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