Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 3.8e-100 368.2 193 100.0
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 2.9e-84 315.5 195 86.2
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 2.5e-83 312.4 205 81.0
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 6.1e-66 254.6 193 75.6
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 6.1e-66 254.6 198 75.3
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 3.0e-65 252.3 196 75.0
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 5.1e-65 251.5 194 73.2
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 1.2e-58 230.3 195 69.7
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 5.3e-54 214.9 201 66.7
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 2.0e-53 213.0 199 64.8
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 1.3e-52 210.3 206 67.0
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 3.0e-49 199.1 198 61.1
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 3.0e-49 199.1 202 63.4
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 4.0e-49 198.7 203 64.0
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 4.0e-49 198.7 201 59.7
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 1.7e-47 193.4 203 62.1
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 1.1e-46 190.7 202 62.9
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 7.0e-46 188.0 201 59.7
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 4.5e-45 185.3 204 60.3
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 5.9e-45 184.9 200 60.5
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 1.3e-44 183.7 207 57.5
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 7.2e-43 177.9 202 58.4
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 4.7e-42 175.3 203 58.1
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 3.0e-41 172.6 202 56.9
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 4.4e-40 168.7 196 59.2
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 9.8e-40 167.5 200 54.0
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 4.9e-39 165.2 207 56.5
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 6.3e-39 164.9 203 58.1
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 6.3e-39 164.9 212 52.8
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 1.1e-38 164.1 202 53.5
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.4e-38 162.9 193 58.0
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 7.0e-38 161.4 195 52.3
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 2.7e-37 159.5 197 56.9
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 1.7e-36 156.8 204 52.9
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 2.3e-36 156.4 145 66.9
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 2.9e-36 156.0 176 55.1
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 3.8e-36 155.6 225 50.7
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 1.1e-35 154.1 223 52.9
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 5.5e-35 151.8 197 55.8
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.2e-34 150.6 208 52.9
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 6.1e-34 148.3 199 53.3
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 6.1e-34 148.3 199 53.3
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 6.1e-34 148.3 203 52.7
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 3.0e-33 146.0 215 49.3
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 3.0e-33 146.0 196 52.0
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 5.2e-33 145.2 188 55.9
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 6.8e-33 144.8 196 54.1
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 6.8e-33 144.8 203 48.8
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 7.5e-32 141.4 118 67.8
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 4.9e-31 138.7 202 49.5
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 6.3e-31 138.3 201 47.8
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 8.3e-31 137.9 210 47.6
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 1.8e-30 136.7 210 47.1
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.8e-30 136.7 200 50.0
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 3.2e-30 136.0 204 48.5
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 9.2e-30 134.4 210 46.7
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 1.2e-29 134.0 169 53.3
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.6e-29 133.7 204 51.0
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.0e-29 133.3 221 44.8
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 7.8e-29 131.3 207 47.8
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.3e-28 130.6 211 46.4
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 1.7e-28 130.2 209 48.8
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 1.7e-28 130.2 205 47.8
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 5.0e-28 128.6 212 45.8
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.9e-27 126.7 207 47.8
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 4.3e-27 125.6 172 51.2
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 5.6e-27 125.2 201 43.3
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 1.6e-26 123.6 215 46.0
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 1.6e-26 123.6 204 47.1
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.1e-26 123.2 207 46.9
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 4.7e-26 122.1 160 52.5
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 1.8e-25 120.2 177 46.9
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 4.0e-25 119.0 221 43.0
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 5.2e-25 118.6 212 46.7
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 2.0e-24 116.7 206 45.6
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 4.4e-24 115.5 201 45.3
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 4.4e-24 115.5 168 49.4
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 1.7e-23 113.6 203 45.8
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 2.9e-23 112.8 203 42.9
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 3.7e-23 112.5 200 46.0
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 4.9e-23 112.1 200 45.5
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 4.9e-23 112.1 200 45.5
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 4.9e-23 112.1 215 45.1
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 6.4e-23 111.7 210 44.3
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 6.4e-23 111.7 205 47.8
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 1.4e-22 110.5 207 44.9
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 1.4e-22 110.5 211 42.2
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 1.4e-22 110.5 207 44.0
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 1.9e-22 110.2 200 45.0
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 1.9e-22 110.2 200 45.0
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 2.4e-22 109.8 199 42.2
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 1.6e-21 107.1 210 44.8
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 1.6e-21 107.1 205 46.3
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 2.0e-21 106.7 213 43.2
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 2.0e-21 106.7 210 43.3
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 2.7e-21 106.3 200 44.5
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 4.6e-21 105.5 204 42.6
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 4.6e-21 105.5 213 43.2
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 1.0e-20 104.4 204 42.2
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 1.0e-20 104.4 204 42.2
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 1.0e-20 104.4 202 44.1
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 1.3e-20 104.0 211 44.1
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 3.0e-20 102.8 210 43.3
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 3.0e-20 102.8 205 45.9
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 5.0e-20 102.1 204 41.7
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 5.0e-20 102.1 198 41.9
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 6.6e-20 101.7 193 42.5
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 6.6e-20 101.7 211 41.7
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 8.6e-20 101.3 142 50.7
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 1.1e-19 100.9 211 42.7
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 1.1e-19 100.9 201 40.8
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 1.5e-19 100.5 211 42.7
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 1.9e-19 100.1 198 46.5
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 2.5e-19 99.8 211 43.6
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 2.5e-19 99.8 211 42.2
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 7.3e-19 98.2 188 43.6
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 9.5e-19 97.8 182 47.3
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 1.6e-18 97.1 171 45.6
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 2.8e-18 96.3 113 54.9
Psat7g014640 Pisum sativum HOM05D003644 ORTHO05D004305 2.8e-18 96.3 164 48.2
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 3.6e-18 95.9 200 38.0
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 4.7e-18 95.5 214 39.3
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 8.1e-18 94.7 199 41.2
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 1.1e-17 94.4 199 44.2
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 2.3e-17 93.2 189 46.0
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 3.1e-17 92.8 196 37.2
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 8.9e-17 91.3 201 42.3
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 1.2e-16 90.9 202 41.6
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 2.0e-16 90.1 138 47.1
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 7.5e-16 88.2 196 39.8
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 1.7e-15 87.0 137 46.7
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 2.2e-15 86.7 162 43.8
Oeu018442.1 Olea europaea HOM05D003644 ORTHO05D004305 8.3e-15 84.7 101 58.4
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 8.3e-15 84.7 192 38.5
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 1.4e-14 84.0 202 40.1
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 1.4e-14 84.0 162 43.8
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 3.2e-14 82.8 197 41.1
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 4.1e-14 82.4 200 41.0
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 4.1e-14 82.4 212 40.1
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 5.4e-14 82.0 138 43.5
Medtr8g102890 Medicago truncatula HOM05D003644 ORTHO05D004305 1.6e-13 80.5 103 53.4
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 2.7e-13 79.7 209 41.1
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 3.5e-13 79.3 197 39.6
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 4.6e-13 79.0 213 39.9
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 1.3e-12 77.4 202 40.6
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 1.3e-12 77.4 115 50.4
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 2.3e-12 76.6 199 37.2
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 3.0e-12 76.3 129 43.4
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 3.0e-12 76.3 207 38.2
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 5.1e-12 75.5 197 34.5
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 6.6e-12 75.1 135 45.9
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 8.6e-12 74.7 164 43.3
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 8.6e-12 74.7 164 43.3
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 2.5e-11 73.2 125 40.8
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 3.3e-11 72.8 138 45.7
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 5.6e-11 72.0 145 42.8
HPP92_019983 Vanilla planifolia HOM05D003644 ORTHO05D004305 5.6e-11 72.0 194 35.6
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 7.3e-11 71.6 196 36.7
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 9.5e-11 71.2 191 36.6
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 9.5e-11 71.2 138 42.8
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 3.6e-10 69.3 206 35.9
Zm00001eb156860 Zea mays HOM05D003644 ORTHO05D004305 4.7e-10 68.9 205 38.5
Rhsim05G0043500 Rhododendron simsii HOM05D003644 ORTHO05D004305 6.2e-10 68.6 109 46.8
unitig_578.g15927 Utricularia gibba HOM05D003644 ORTHO05D004305 8.1e-10 68.2 128 41.4
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 2.3e-09 66.6 205 33.7
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 3.1e-09 66.2 203 36.0
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 1.5e-08 63.9 62 59.7
Os05g0559316 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 2.0e-08 63.5 81 55.6
Os01g0676900 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 3.4e-08 62.8 194 34.0
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 5.8e-08 62.0 52 63.5
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.7e-07 60.5 201 35.3
Ah.09g230900 Amaranthus hybridus HOM05D003644 ORTHO05D004305 2.2e-07 60.1 220 33.2
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 3.7e-07 59.3 121 42.1
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 4.9e-07 58.9 90 50.0
Sc08g0007700 Simmondsia chinensis HOM05D003644 ORTHO05D004305 6.4e-07 58.5 154 31.2
Solyc07g018370.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 6.4e-07 58.5 119 38.7
Zm00001eb343410 Zea mays HOM05D003644 ORTHO05D004305 6.4e-07 58.5 180 33.9
Nitab4.5_0001004g0030 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.1e-06 57.8 123 44.7


User provided reference genes

Program Settings