Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 2.8e-97 358.6 183 100.0
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 2.2e-81 305.8 157 96.8
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 3.1e-80 302.0 157 96.2
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 3.3e-77 292.0 157 91.7
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 3.6e-76 288.5 157 88.5
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 1.8e-75 286.2 157 87.9
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 1.2e-74 283.5 157 87.9
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 1.7e-73 279.6 157 87.3
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 1.7e-73 279.6 157 87.3
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 6.4e-73 277.7 157 86.6
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 1.1e-69 266.9 157 83.4
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 1.1e-67 260.4 157 79.6
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 2.3e-67 259.2 157 77.7
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 3.1e-67 258.8 157 79.6
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 5.2e-67 258.1 157 77.1
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 6.8e-67 257.7 157 79.0
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 1.5e-66 256.5 157 77.7
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 4.4e-66 255.0 157 76.4
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 5.8e-66 254.6 157 75.8
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 1.3e-65 253.4 157 76.4
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 1.3e-65 253.4 157 77.1
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 1.3e-65 253.4 157 77.1
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 1.7e-65 253.1 157 77.1
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 1.7e-65 253.1 158 74.1
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 2.2e-65 252.7 157 77.1
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 2.2e-65 252.7 157 76.4
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 3.7e-65 251.9 157 77.1
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 4.9e-65 251.5 157 76.4
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 4.9e-65 251.5 157 76.4
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 4.9e-65 251.5 157 76.4
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 4.9e-65 251.5 157 76.4
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 1.1e-64 250.4 157 76.4
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 1.1e-64 250.4 157 77.1
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 1.1e-64 250.4 157 76.4
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 1.4e-64 250.0 157 75.8
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 1.9e-64 249.6 157 77.7
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 1.9e-64 249.6 157 76.4
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 2.4e-64 249.2 157 76.4
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 2.4e-64 249.2 157 77.1
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 2.4e-64 249.2 157 75.8
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 3.2e-64 248.8 157 77.1
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 3.2e-64 248.8 158 75.9
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 4.1e-64 248.4 157 77.7
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 4.1e-64 248.4 157 75.8
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 5.4e-64 248.1 157 75.8
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 5.4e-64 248.1 157 75.8
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 9.2e-64 247.3 157 77.1
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 1.6e-63 246.5 157 75.8
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 1.6e-63 246.5 157 74.5
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 1.6e-63 246.5 157 75.2
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 2.7e-63 245.7 177 68.9
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 2.7e-63 245.7 157 75.2
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 3.5e-63 245.4 157 75.8
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 3.5e-63 245.4 157 74.5
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 3.5e-63 245.4 157 75.2
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 4.6e-63 245.0 157 74.5
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 4.6e-63 245.0 157 74.5
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 6.0e-63 244.6 157 75.8
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 6.0e-63 244.6 157 75.8
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 6.0e-63 244.6 157 75.8
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 7.8e-63 244.2 157 73.9
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 7.8e-63 244.2 157 75.8
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 7.8e-63 244.2 157 75.8
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 7.8e-63 244.2 157 74.5
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 7.8e-63 244.2 157 74.5
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 7.8e-63 244.2 157 73.9
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 7.8e-63 244.2 157 75.8
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 1.0e-62 243.8 157 75.2
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 1.3e-62 243.4 157 73.9
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 1.3e-62 243.4 157 75.2
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 1.3e-62 243.4 157 75.2
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 1.7e-62 243.0 157 74.5
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 1.7e-62 243.0 157 73.2
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 2.3e-62 242.7 157 73.2
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 3.0e-62 242.3 157 75.2
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 3.9e-62 241.9 158 73.4
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 3.9e-62 241.9 157 74.5
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 6.6e-62 241.1 157 75.2
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 8.6e-62 240.7 157 73.2
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 1.1e-61 240.4 157 75.2
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 2.5e-61 239.2 157 74.5
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 3.3e-61 238.8 157 72.6
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 4.3e-61 238.4 168 69.6
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 1.6e-60 236.5 157 68.8
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 2.1e-60 236.1 157 71.3
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 3.6e-60 235.3 158 73.4
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 4.7e-60 235.0 160 72.5
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 4.7e-60 235.0 157 73.9
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 1.1e-59 233.8 157 70.7
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 1.4e-59 233.4 162 71.6
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 3.1e-59 232.3 157 70.7
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 5.2e-59 231.5 157 70.1
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 7.5e-58 227.6 160 67.5
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 1.7e-57 226.5 156 67.9
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 3.7e-57 225.3 151 70.2
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 8.3e-57 224.2 167 66.5
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 2.4e-56 222.6 162 66.0
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 1.2e-55 220.3 157 65.0
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 1.0e-54 217.2 138 75.4
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 5.6e-53 211.5 167 64.1
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 4.0e-51 205.3 157 68.2
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 4.9e-49 198.4 158 62.0
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 6.4e-49 198.0 156 59.6
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 6.4e-49 198.0 156 59.6
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 7.8e-47 191.0 121 75.2
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 6.6e-46 188.0 118 75.4
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 1.9e-45 186.4 121 75.2
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 3.6e-44 182.2 160 51.9
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 1.1e-43 180.6 118 72.0
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 2.6e-42 176.0 142 59.9
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 3.5e-39 165.6 188 47.9
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 7.8e-39 164.5 210 43.8
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 1.5e-37 160.2 95 80.0
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 2.0e-34 149.8 182 45.6
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 7.6e-34 147.9 101 78.2
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 5.6e-29 131.7 85 72.9
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 7.6e-26 121.3 188 41.5
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 1.9e-24 116.7 180 37.8
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 1.9e-24 116.7 180 37.8
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 1.0e-22 110.9 96 59.4
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 2.1e-20 103.2 75 66.7
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 2.1e-20 103.2 75 66.7
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 8.4e-17 91.3 53 83.0
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 8.4e-17 91.3 52 84.6
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 1.1e-16 90.9 51 88.2
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 1.9e-16 90.1 169 39.1
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 7.9e-15 84.7 53 71.7
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 1.6e-12 77.0 47 78.7
arahy.Tifrunner.gnm1.ann1.43H8SX Arachis hypogaea HOM05D000371 ORTHO05D013217 3.7e-12 75.9 53 71.7
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 3.7e-12 75.9 57 57.9
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 4.8e-12 75.5 46 80.4
MBI06_g04307_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 3.1e-11 72.8 153 37.9
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 4.5e-10 68.9 38 81.6
COL.COLO4_34793 Corchorus olitorius HOM05D006031 ORTHO05D007417 4.2e-08 62.4 34 79.4
Thhalv10002738m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 6.1e-07 58.5 38 71.1
Lsat_1_v5_gn_2_108580 Lactuca sativa HOM05D006031 ORTHO05D007417 7.9e-07 58.2 38 78.9
arahy.Tifrunner.gnm1.ann1.LJ4ZNG Arachis hypogaea HOM05D000371 ORTHO05D013217 1.8e-06 57.0 31 83.9
PGSC0003DMG400015828 Solanum tuberosum HOM05D000124 ORTHO05D397188 2.3e-06 56.6 71 45.1


User provided reference genes

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