Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g042920 Pisum sativum HOM05D005548 ORTHO05D007497 8.0e-258 893.3 458 100.0
TPR.G18453 Trifolium pratense HOM05D005548 ORTHO05D007497 1.2e-208 729.9 459 81.0
Medtr6g088460 Medicago truncatula HOM05D005548 ORTHO05D007497 4.3e-203 711.4 458 79.9
Ca_03976_v3 Cicer arietinum L. HOM05D005548 ORTHO05D007497 8.4e-199 697.2 461 78.1
VMungo0464G1126 Vigna mungo HOM05D005548 ORTHO05D007497 8.7e-188 660.6 467 73.7
Phvul.004G163700 Phaseolus vulgaris HOM05D005548 ORTHO05D007497 1.1e-187 660.2 467 73.9
Glyma.07G085900 Glycine max HOM05D005548 ORTHO05D007497 3.8e-183 645.2 468 72.9
Glyma.09G191000 Glycine max HOM05D005548 ORTHO05D007497 4.2e-182 641.7 468 72.0
Lj2g0015861 Lotus japonicus HOM05D005548 ORTHO05D007497 7.9e-181 637.5 429 75.3
arahy.Tifrunner.gnm1.ann1.HQIA7A Arachis hypogaea HOM05D005548 ORTHO05D007497 2.5e-179 632.5 469 70.6
Lalb_Chr22g0352791 Lupinus albus HOM05D005548 ORTHO05D007497 3.1e-177 625.5 466 71.0
Lalb_Chr14g0371531 Lupinus albus HOM05D005548 ORTHO05D007497 7.7e-176 620.9 467 70.2
Haze_25730 Corylus avellana HOM05D005548 ORTHO05D007497 3.7e-170 602.1 467 67.2
Cpa.g.sc23.102 Carica papaya HOM05D005548 ORTHO05D007497 3.1e-169 599.0 464 68.3
QL02p085206 Quercus lobata HOM05D005548 ORTHO05D007497 3.1e-169 599.0 477 66.5
Cfa021563 Carpinus fangiana HOM05D005548 ORTHO05D007497 5.3e-169 598.2 468 67.7
Haze_25723 Corylus avellana HOM05D005548 ORTHO05D007497 5.3e-169 598.2 467 67.0
GSVIVG01015386001 Vitis vinifera HOM05D005548 ORTHO05D007497 1.5e-168 596.7 424 71.7
Manes.03G021300 Manihot esculenta HOM05D005548 ORTHO05D007497 4.5e-168 595.1 468 65.8
Thecc.09G109700 Theobroma cacao HOM05D005548 ORTHO05D007497 5.0e-167 591.7 466 66.7
TAR383G0243 Trochodendron aralioides HOM05D005548 ORTHO05D007497 1.1e-166 590.5 475 65.5
CiPaw.04G163600 Carya illinoinensis HOM05D005548 ORTHO05D007497 7.2e-166 587.8 462 66.0
EL10Ac8g18489 Beta vulgaris HOM05D005548 ORTHO05D007497 3.6e-165 585.5 450 67.1
Duzib168G0181 Durio zibethinus HOM05D005548 ORTHO05D007497 1.4e-164 583.6 465 66.9
Potri.018G080900 Populus trichocarpa HOM05D005548 ORTHO05D007497 1.8e-164 583.2 469 64.0
Prupe.7G231800 Prunus persica HOM05D005548 ORTHO05D007497 2.3e-164 582.8 466 66.7
Eucgr.C01037 Eucalyptus grandis HOM05D005548 ORTHO05D007497 5.2e-164 581.6 465 65.2
Dinv36636 Davidia involucrata HOM05D005548 ORTHO05D007497 4.4e-163 578.6 472 66.9
Sabra18G0068100 Salix brachista HOM05D005548 ORTHO05D007497 9.7e-163 577.4 463 64.6
CSS0001162 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 1.3e-162 577.0 468 67.5
ClCG00G004520 Citrullus lanatus HOM05D005548 ORTHO05D007497 1.3e-162 577.0 465 64.7
CAN.G1529.9 Capsicum annuum HOM05D005548 ORTHO05D007497 2.8e-162 575.9 466 65.5
Nn2g11732 Nelumbo nucifera HOM05D005548 ORTHO05D007497 4.8e-162 575.1 466 65.2
CSS0009071 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 6.3e-162 574.7 464 67.5
FAN19G0123 Fragaria x ananassa HOM05D005548 ORTHO05D007497 6.3e-162 574.7 465 64.5
FvH4_1g04721 Fragaria vesca HOM05D005548 ORTHO05D007497 1.1e-161 573.9 465 64.7
PGSC0003DMG400000312 Solanum tuberosum HOM05D005548 ORTHO05D007497 1.4e-161 573.5 457 66.3
MELO3C025346.2 Cucumis melo HOM05D005548 ORTHO05D007497 2.4e-161 572.8 403 70.5
Dinv41607 Davidia involucrata HOM05D005548 ORTHO05D007497 5.3e-161 571.6 472 65.7
Hma1.2p1_0518F.1_g171060 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 5.3e-161 571.6 407 70.0
Nitab4.5_0005947g0010 Nicotiana tabacum HOM05D005548 ORTHO05D007497 5.3e-161 571.6 466 65.2
Hund26198 Selenicereus undatus HOM05D005548 ORTHO05D007497 9.1e-161 570.9 458 65.1
MD02G1046200 Malus domestica HOM05D005548 ORTHO05D007497 1.6e-160 570.1 470 64.9
RcHm_v2.0_Chr2g0090331 Rosa chinensis HOM05D005548 ORTHO05D007497 1.6e-160 570.1 457 65.6
TWI63G0439 Tripterygium wilfordii HOM05D005548 ORTHO05D007497 4.5e-160 568.5 470 64.9
MBI04_g22012_MAGBIO Magnolia biondii HOM05D005548 ORTHO05D007497 7.7e-160 567.8 474 63.9
Atru.chr7.1357 Acer truncatum HOM05D005548 ORTHO05D007497 1.3e-159 567.0 380 73.7
PGR142G0895 Punica granatum HOM05D005548 ORTHO05D007497 1.3e-159 567.0 399 70.4
Solyc12g007090.2 Solanum lycopersicum HOM05D005548 ORTHO05D007497 1.7e-159 566.6 457 65.2
Sopen12g003070 Solanum pennellii HOM05D005548 ORTHO05D007497 1.7e-159 566.6 457 65.2
Actinidia09420 Actinidia chinensis HOM05D005548 ORTHO05D007497 6.5e-159 564.7 468 65.0
Lsat_1_v5_gn_8_95001 Lactuca sativa HOM05D005548 ORTHO05D007497 1.5e-158 563.5 438 66.7
Sed0013441 Sechium edule HOM05D005548 ORTHO05D007497 5.5e-158 561.6 465 63.4
FAN26G0240 Fragaria x ananassa HOM05D005548 ORTHO05D007497 9.4e-158 560.8 465 64.1
FAN23G0305 Fragaria x ananassa HOM05D005548 ORTHO05D007497 2.1e-157 559.7 465 63.9
Cc06_g09710 Coffea canephora HOM05D005548 ORTHO05D007497 2.7e-157 559.3 473 64.7
CsaV3_1G024240 Cucumis sativus L. HOM05D005548 ORTHO05D007497 2.7e-157 559.3 493 61.3
DCAR_010452 Daucus carota HOM05D005548 ORTHO05D007497 6.1e-157 558.1 450 62.7
HanXRQChr06g0179971 Helianthus annuus HOM05D005548 ORTHO05D007497 1.8e-156 556.6 415 66.7
Gohir.A07G006100 Gossypium hirsutum HOM05D005548 ORTHO05D007497 2.3e-156 556.2 467 63.4
THA.LOC104811114 Tarenaya hassleriana HOM05D005548 ORTHO05D007497 6.7e-156 554.7 475 63.4
COL.COLO4_34874 Corchorus olitorius HOM05D005548 ORTHO05D007497 1.5e-155 553.5 374 73.3
Migut.K00455 Erythranthe guttata HOM05D005548 ORTHO05D007497 2.6e-155 552.7 403 68.5
Gorai.001G005500 Gossypium raimondii HOM05D005548 ORTHO05D007497 4.4e-155 552.0 466 63.1
Gohir.D07G005900 Gossypium hirsutum HOM05D005548 ORTHO05D007497 1.3e-154 550.4 466 63.1
MD15G1184300 Malus domestica HOM05D005548 ORTHO05D007497 1.7e-154 550.1 466 64.2
AUR62010987 Chenopodium quinoa HOM05D005548 ORTHO05D007497 4.8e-154 548.5 374 70.3
PSO832G1226 Papaver somniferum HOM05D005548 ORTHO05D007497 4.8e-154 548.5 406 67.5
Lj7C651T8 Lonicera japonica HOM05D005548 ORTHO05D007497 6.3e-154 548.1 391 70.8
Peaxi162Scf00546g00024 Petunia axillaris HOM05D005548 ORTHO05D007497 1.4e-153 547.0 462 64.1
Sc18g0001240 Simmondsia chinensis HOM05D005548 ORTHO05D007497 2.4e-153 546.2 466 62.9
Actinidia20374 Actinidia chinensis HOM05D005548 ORTHO05D007497 3.1e-153 545.8 381 71.7
SalBow1G6148 Salvia bowleyana HOM05D005548 ORTHO05D007497 1.2e-152 543.9 435 65.5
PSO782G1908 Papaver somniferum HOM05D005548 ORTHO05D007497 2.9e-151 539.3 459 61.4
Sp6g24840 Schrenkiella parvula HOM05D005548 ORTHO05D007497 1.9e-150 536.6 471 62.0
Carub.0006s1789 Capsella rubella HOM05D005548 ORTHO05D007497 7.2e-150 534.6 455 62.0
Aqoxy7G01651 Aquilegia oxysepala HOM05D005548 ORTHO05D007497 2.1e-149 533.1 450 62.2
AT5G19540 Arabidopsis thaliana HOM05D005548 ORTHO05D007497 2.1e-149 533.1 467 61.0
MSTRG.26421 Avicennia marina HOM05D005548 ORTHO05D007497 6.1e-149 531.6 435 62.5
AL6G31050 Arabidopsis lyrata HOM05D005548 ORTHO05D007497 1.8e-148 530.0 409 65.3
Nitab4.5_0002904g0080 Nicotiana tabacum HOM05D005548 ORTHO05D007497 1.8e-148 530.0 466 62.4
SGA_v2.0_scaffold307G48040 Striga asiatica HOM05D005548 ORTHO05D007497 2.3e-148 529.6 433 62.1
Thhalv10013469m.g Eutrema salsugineum HOM05D005548 ORTHO05D007497 5.2e-148 528.5 466 61.4
A02p05630 Brassica napus HOM05D005548 ORTHO05D007497 1.7e-146 523.5 465 59.1
BraA02t05515Z Brassica rapa HOM05D005548 ORTHO05D007497 1.7e-146 523.5 465 59.1
BcaB05g23389 Brassica carinata HOM05D005548 ORTHO05D007497 2.2e-146 523.1 457 60.0
CARHR193360 Cardamine hirsuta HOM05D005548 ORTHO05D007497 1.4e-145 520.4 466 59.7
ECA233G4048 Erigeron canadensis HOM05D005548 ORTHO05D007497 1.4e-145 520.4 379 67.5
ATR0315G003 Amborella trichopoda HOM05D005548 ORTHO05D007497 9.1e-145 517.7 402 64.4
unitig_899.g15439 Utricularia gibba HOM05D005548 ORTHO05D007497 9.1e-145 517.7 392 65.3
Aa31LG4G18070 Aethionema arabicum HOM05D005548 ORTHO05D007497 2.7e-144 516.2 402 64.4
BcaC03g13685 Brassica carinata HOM05D005548 ORTHO05D007497 4.5e-144 515.4 463 59.4
BNapus_Darmor_BZH_scaffold_38p02320 Brassica napus HOM05D005548 ORTHO05D007497 4.5e-144 515.4 463 59.4
BolC2t06964H Brassica oleracea HOM05D005548 ORTHO05D007497 1.7e-143 513.5 463 59.2
CDE02G3701 Ceratophyllum demersum HOM05D005548 ORTHO05D007497 1.9e-142 510.0 397 64.5
vmacro20704 Vaccinium macrocarpon HOM05D005548 ORTHO05D007497 5.2e-140 501.9 456 59.9
Duzib150G0071 Durio zibethinus HOM05D005548 ORTHO05D007497 4.4e-139 498.8 460 61.1
Rhsim01G0095300 Rhododendron simsii HOM05D005548 ORTHO05D007497 3.5e-136 489.2 466 56.4
Os08g0387500 Oryza sativa ssp. japonica HOM05D005548 ORTHO05D007497 3.8e-135 485.7 388 61.3
Zm00001eb042080 Zea mays HOM05D005548 ORTHO05D007497 1.4e-132 477.2 410 58.3
SalBow1G2309 Salvia bowleyana HOM05D005548 ORTHO05D007497 1.3e-127 460.7 344 68.6
Hma1.2p1_0518F.1_g171070 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 6.2e-125 451.8 315 71.7
FAN28G1005 Fragaria x ananassa HOM05D005548 ORTHO05D007497 1.1e-124 451.1 390 62.6
Pp3c17_15530 Physcomitrium patens HOM05D005548 ORTHO05D007497 7.1e-105 385.2 376 52.1
HPP92_019989 Vanilla planifolia HOM05D005548 ORTHO05D004628 1.3e-103 380.9 398 54.0
Pp3c17_15540 Physcomitrium patens HOM05D005548 ORTHO05D007497 5.6e-102 375.6 365 51.8
Mapoly0115s0052 Marchantia polymorpha HOM05D005548 ORTHO05D007497 6.4e-98 362.1 381 50.1
AagrBONN_evm.TU.Sc2ySwM_344.3922 Anthoceros agrestis HOM05D005548 ORTHO05D007497 1.9e-97 360.5 403 45.2
AUR62021496 Chenopodium quinoa HOM05D005548 ORTHO05D007497 7.3e-94 348.6 272 65.1
SMO367G0640 Selaginella moellendorffii HOM05D005548 ORTHO05D007497 4.5e-91 339.3 396 47.5
SEGI_13755 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 9.9e-91 338.2 376 47.9
Rhsim01G0096400 Rhododendron simsii HOM05D005548 ORTHO05D007497 8.2e-77 292.0 340 46.2
SEGI_11261 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 2.2e-74 283.9 316 47.8
CBR_g3024 Chara braunii HOM05D005548 ORTHO05D007497 1.3e-71 274.6 383 44.4
AUR62021498 Chenopodium quinoa HOM05D005548 ORTHO05D007497 1.2e-56 224.9 139 71.9
Ciclev10010350m.g Citrus clementina HOM05D005548 ORTHO05D007497 4.0e-39 166.8 251 41.8
Oeu048670.1 Olea europaea HOM05D005548 ORTHO05D007497 2.8e-37 160.6 99 71.7
Nn8g39172 Nelumbo nucifera HOM05D005548 ORTHO05D007497 1.1e-36 158.7 113 69.9
arahy.Tifrunner.gnm1.ann1.VN1956 Arachis hypogaea HOM05D005548 ORTHO05D007497 1.5e-30 138.3 140 57.9
TPR.G36012 Trifolium pratense HOM05D005548 ORTHO05D007497 1.1e-28 132.1 120 65.0
SEGI_35049 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 4.1e-28 130.2 260 36.2
SEGI_23308 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 1.2e-27 128.6 319 33.9
CSS0016063 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 3.0e-23 114.0 84 73.8
CSS0042262 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 1.5e-22 111.7 84 72.6
Ah.12g056490 Amaranthus hybridus HOM05D005548 ORTHO05D007497 5.7e-22 109.8 82 64.6
CSS0021555 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 4.1e-20 103.6 72 70.8
MCO02G293 Micromonas commoda HOM05D005548 ORTHO05D007497 5.9e-19 99.8 410 26.1
Dinv06981 Davidia involucrata HOM05D005548 ORTHO05D045157 1.7e-18 98.2 85 64.7
CSS0011769 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 4.3e-17 93.6 145 48.3
CSS0008802 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 2.4e-12 77.8 136 46.3
SalBow1G1492 Salvia bowleyana HOM05D005548 ORTHO05D007497 4.6e-11 73.6 136 38.2
Lsat_1_v5_gn_5_96001 Lactuca sativa HOM05D005548 ORTHO05D029961 1.9e-09 68.2 76 47.4
CSS0008633 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 2.5e-09 67.8 72 54.2


User provided reference genes

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