Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g042280 Pisum sativum HOM05D007950 ORTHO05D009951 5.1e-31 137.1 70 100.0
arahy.Tifrunner.gnm1.ann1.7G47EE Arachis hypogaea HOM05D007950 ORTHO05D009951 2.1e-24 115.2 70 84.3
arahy.Tifrunner.gnm1.ann1.U6R6BR Arachis hypogaea HOM05D007950 ORTHO05D009951 2.1e-24 115.2 70 84.3
Phvul.003G020900 Phaseolus vulgaris HOM05D007950 ORTHO05D009951 8.8e-23 109.8 70 75.7
TPR.G35274 Trifolium pratense HOM05D007950 ORTHO05D009951 2.6e-22 108.2 66 81.8
Medtr6g086645 Medicago truncatula HOM05D007950 ORTHO05D009951 4.4e-22 107.5 68 82.4
CSS0015996 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 4.1e-20 100.9 68 72.1
QL02p085472 Quercus lobata HOM05D007950 ORTHO05D009951 6.9e-20 100.1 69 69.6
Glyma.09G123700 Glycine max HOM05D007950 ORTHO05D009951 3.4e-19 97.8 70 70.0
Thecc.09G111000 Theobroma cacao HOM05D007950 ORTHO05D009951 5.9e-19 97.1 70 71.4
Ciclev10010772m.g Citrus clementina HOM05D007950 ORTHO05D009951 7.7e-19 96.7 70 64.3
Eucgr.C01044 Eucalyptus grandis HOM05D007950 ORTHO05D009951 7.7e-19 96.7 70 65.7
vmacro20696 Vaccinium macrocarpon HOM05D007950 ORTHO05D009951 7.7e-19 96.7 70 62.9
GSVIVG01015395001 Vitis vinifera HOM05D007950 ORTHO05D009951 7.7e-19 96.7 70 67.1
MD15G1186200 Malus domestica HOM05D007950 ORTHO05D009951 1.7e-18 95.5 70 65.7
RcHm_v2.0_Chr2g0090511 Rosa chinensis HOM05D007950 ORTHO05D009951 8.5e-18 93.2 70 67.1
FvH4_1g04841 Fragaria vesca HOM05D007950 ORTHO05D009951 3.2e-17 91.3 70 62.9
FAN19G2230 Fragaria x ananassa HOM05D007950 ORTHO05D009951 3.2e-17 91.3 70 62.9
QL05p023317 Quercus lobata HOM05D007950 ORTHO05D009951 3.2e-17 91.3 69 62.3
FAN26G3407 Fragaria x ananassa HOM05D007950 ORTHO05D009951 4.2e-17 90.9 70 62.9
MD02G1047700 Malus domestica HOM05D007950 ORTHO05D009951 1.2e-16 89.4 70 61.4
Manes.16G116501 Manihot esculenta HOM05D007950 ORTHO05D009951 1.2e-16 89.4 70 60.0
Actinidia20354 Actinidia chinensis HOM05D007950 ORTHO05D009951 2.1e-16 88.6 68 61.8
FAN23G0617 Fragaria x ananassa HOM05D007950 ORTHO05D009951 2.1e-16 88.6 70 61.4
Nn8g39199 Nelumbo nucifera HOM05D007950 ORTHO05D009951 3.6e-16 87.8 70 61.4
CiPaw.03G232500 Carya illinoinensis HOM05D007950 ORTHO05D009951 1.0e-15 86.3 69 60.9
Prupe.7G230500 Prunus persica HOM05D007950 ORTHO05D009951 1.4e-15 85.9 61 65.6
CiPaw.04G164400 Carya illinoinensis HOM05D007950 ORTHO05D009951 1.8e-15 85.5 61 67.2
Potri.001G181701 Populus trichocarpa HOM05D007950 ORTHO05D009951 2.3e-15 85.1 67 62.7
TAR636G2963 Trochodendron aralioides HOM05D007950 ORTHO05D009951 2.3e-15 85.1 68 61.8
Gohir.D06G060600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 3.0e-15 84.7 68 61.8
Gorai.010G070600 Gossypium raimondii HOM05D007950 ORTHO05D009951 3.0e-15 84.7 68 61.8
Gohir.A06G062300 Gossypium hirsutum HOM05D007950 ORTHO05D009951 3.9e-15 84.3 68 60.3
Manes.11G045700 Manihot esculenta HOM05D007950 ORTHO05D009951 3.9e-15 84.3 68 60.3
ClCG06G008510 Citrullus lanatus HOM05D007950 ORTHO05D009951 6.7e-15 83.6 70 57.1
ATR0980G014 Amborella trichopoda HOM05D007950 ORTHO05D009951 1.5e-14 82.4 70 55.7
Gohir.1Z049586 Gossypium hirsutum HOM05D007950 ORTHO05D009951 1.5e-14 82.4 70 57.1
CSS0048253 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 2.6e-14 81.6 67 58.2
Gohir.D03G063400 Gossypium hirsutum HOM05D007950 ORTHO05D009951 3.3e-14 81.3 70 55.7
Gorai.002G059800 Gossypium raimondii HOM05D007950 ORTHO05D009951 3.3e-14 81.3 70 55.7
Medtr4g012610 Medicago truncatula HOM05D007950 ORTHO05D009951 3.3e-14 81.3 70 55.7
Gohir.A05G130600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 4.4e-14 80.9 68 60.3
Gohir.D05G129500 Gossypium hirsutum HOM05D007950 ORTHO05D009951 4.4e-14 80.9 68 60.3
Thecc.06G089600 Theobroma cacao HOM05D007950 ORTHO05D009951 5.7e-14 80.5 68 58.8
CsaV3_1G030490 Cucumis sativus L. HOM05D007950 ORTHO05D009951 7.4e-14 80.1 68 54.4
PGR102G0372 Punica granatum HOM05D007950 ORTHO05D009951 7.4e-14 80.1 70 51.4
Sc10g0007380 Simmondsia chinensis HOM05D007950 ORTHO05D009951 7.4e-14 80.1 68 55.9
CSS0032282 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 3.7e-13 77.8 67 56.7
Medtr6g086730 Medicago truncatula HOM05D007950 ORTHO05D009951 4.8e-13 77.4 50 80.0
CiPaw.02G150700 Carya illinoinensis HOM05D007950 ORTHO05D009951 8.2e-13 76.6 68 54.4
Lj3g0016273 Lotus japonicus HOM05D007950 ORTHO05D009951 1.1e-12 76.3 70 51.4
Nn2g11757 Nelumbo nucifera HOM05D007950 ORTHO05D009951 1.1e-12 76.3 70 51.4
Eucgr.J02984 Eucalyptus grandis HOM05D007950 ORTHO05D009951 1.8e-12 75.5 60 55.0
Medtr4g012580 Medicago truncatula HOM05D007950 ORTHO05D009951 2.4e-12 75.1 65 53.8
TPR.G24171 Trifolium pratense HOM05D007950 ORTHO05D009951 4.1e-12 74.3 65 53.8
Haze_16407 Corylus avellana HOM05D007950 ORTHO05D009951 7.0e-12 73.6 70 48.6
Haze_16408 Corylus avellana HOM05D007950 ORTHO05D009951 7.0e-12 73.6 70 48.6
Glyma.07G005901 Glycine max HOM05D000325 ORTHO05D002025 9.1e-12 73.2 66 54.5
Psat7g251240 Pisum sativum HOM05D007950 ORTHO05D009951 9.1e-12 73.2 70 50.0
Manes.03G020101 Manihot esculenta HOM05D007950 ORTHO05D009951 1.2e-11 72.8 70 54.3
Glyma.08G206200 Glycine max HOM05D007950 ORTHO05D009951 2.0e-11 72.0 65 53.8
arahy.Tifrunner.gnm1.ann1.6Z76EK Arachis hypogaea HOM05D007950 ORTHO05D009951 7.7e-11 70.1 72 51.4
Phvul.010G150100 Phaseolus vulgaris HOM05D007950 ORTHO05D009951 2.9e-10 68.2 70 47.1
Sed0000041 Sechium edule HOM05D007950 ORTHO05D009951 2.9e-10 68.2 60 51.7
Lalb_Chr04g0262731 Lupinus albus HOM05D007950 ORTHO05D009951 3.2e-09 64.7 70 47.1
Potri.003G054001 Populus trichocarpa HOM05D007950 ORTHO05D009951 4.2e-09 64.3 67 50.7
TPR.G8534 Trifolium pratense HOM05D007950 ORTHO05D009951 5.5e-09 63.9 65 46.2
Cc06_g09630 Coffea canephora HOM05D007950 ORTHO05D009951 1.2e-08 62.8 61 49.2
Dinv36624 Davidia involucrata HOM05D007950 ORTHO05D009951 2.1e-08 62.0 68 48.5
Prupe.3G070100 Prunus persica HOM05D007950 ORTHO05D009951 3.6e-08 61.2 74 52.7
CDE06G0019 Ceratophyllum demersum HOM05D007950 ORTHO05D009951 4.7e-08 60.8 67 43.3
Sc08g0007460 Simmondsia chinensis HOM05D007950 ORTHO05D009951 1.0e-07 59.7 68 44.1
FAN05G0591 Fragaria x ananassa HOM05D007950 ORTHO05D009951 3.0e-07 58.2 71 43.7
FAN14G2438 Fragaria x ananassa HOM05D007950 ORTHO05D009951 5.2e-07 57.4 71 43.7
SalBow2G2396 Salvia bowleyana HOM05D007950 ORTHO05D009951 1.2e-06 56.2 53 47.2
Cc04_g03310 Coffea canephora HOM05D007950 ORTHO05D009951 1.5e-06 55.8 68 41.2
Lsat_1_v5_gn_5_103401 Lactuca sativa HOM05D007950 ORTHO05D009951 7.5e-06 53.5 70 38.6
Migut.D01581 Erythranthe guttata HOM05D007950 ORTHO05D009951 9.7e-06 53.1 65 38.5
HanXRQChr09g0275201 Helianthus annuus HOM05D007950 ORTHO05D009951 9.7e-06 53.1 74 32.4


User provided reference genes

Program Settings