Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g039320 Pisum sativum HOM05D003846 ORTHO05D004726 1.9e-110 402.5 203 100.0
Medtr6g085050 Medicago truncatula HOM05D003846 ORTHO05D004726 1.8e-76 289.7 163 89.6
TPR.G9001 Trifolium pratense HOM05D003846 ORTHO05D004726 3.9e-71 271.9 157 87.9
Lj2g0006290 Lotus japonicus HOM05D003846 ORTHO05D004726 9.9e-67 257.3 150 84.7
Glyma.07G089500 Glycine max HOM05D003846 ORTHO05D004726 3.2e-65 252.3 149 84.6
Glyma.09G187300 Glycine max HOM05D003846 ORTHO05D004726 3.2e-65 252.3 149 84.6
Lalb_Chr14g0371301 Lupinus albus HOM05D003846 ORTHO05D004726 3.5e-64 248.8 157 79.6
VMungo0464G1055 Vigna mungo HOM05D003846 ORTHO05D004726 3.5e-64 248.8 156 80.1
Phvul.004G160300 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 2.3e-63 246.1 156 79.5
arahy.Tifrunner.gnm1.ann1.5U1FHR Arachis hypogaea HOM05D003846 ORTHO05D004726 9.6e-62 240.7 158 75.3
arahy.Tifrunner.gnm1.ann1.5K2M2S Arachis hypogaea HOM05D003846 ORTHO05D004726 2.1e-61 239.6 164 73.2
CiPaw.15G127700 Carya illinoinensis HOM05D003846 ORTHO05D004726 8.9e-60 234.2 149 77.2
Haze_18631 Corylus avellana HOM05D003846 ORTHO05D004726 8.9e-60 234.2 149 76.5
Prupe.5G218600 Prunus persica HOM05D003846 ORTHO05D004726 1.5e-59 233.4 150 78.0
CiPaw.16G084800 Carya illinoinensis HOM05D003846 ORTHO05D004726 2.6e-59 232.6 149 76.5
Cfa019801 Carpinus fangiana HOM05D003846 ORTHO05D004726 3.4e-59 232.3 149 75.8
ClCG04G011240 Citrullus lanatus HOM05D003846 ORTHO05D004726 5.8e-59 231.5 150 76.0
MELO3C002078.2 Cucumis melo HOM05D003846 ORTHO05D004726 1.3e-58 230.3 150 76.0
RcHm_v2.0_Chr7g0184811 Rosa chinensis HOM05D003846 ORTHO05D004726 2.2e-58 229.6 150 76.0
CsaV3_1G006510 Cucumis sativus L. HOM05D003846 ORTHO05D004726 4.9e-58 228.4 150 75.3
MD14G1223300 Malus domestica HOM05D003846 ORTHO05D004726 8.4e-58 227.6 150 74.7
PGR044G0282 Punica granatum HOM05D003846 ORTHO05D004726 5.4e-57 224.9 151 75.5
Sed0022338 Sechium edule HOM05D003846 ORTHO05D004726 5.4e-57 224.9 150 74.0
CSS0029565 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 7.1e-57 224.6 150 76.0
FvH4_5g12540 Fragaria vesca HOM05D003846 ORTHO05D004726 7.1e-57 224.6 151 75.5
FAN04G0089 Fragaria x ananassa HOM05D003846 ORTHO05D004726 7.1e-57 224.6 151 75.5
FAN18G2095 Fragaria x ananassa HOM05D003846 ORTHO05D004726 7.1e-57 224.6 151 75.5
FAN18G2723 Fragaria x ananassa HOM05D003846 ORTHO05D004726 7.1e-57 224.6 151 75.5
TAR622G0464 Trochodendron aralioides HOM05D003846 ORTHO05D004726 7.1e-57 224.6 151 76.2
FAN08G1200 Fragaria x ananassa HOM05D003846 ORTHO05D004726 9.3e-57 224.2 151 74.8
QL10p023733 Quercus lobata HOM05D003846 ORTHO05D004726 9.3e-57 224.2 172 69.2
FAN13G1296 Fragaria x ananassa HOM05D003846 ORTHO05D004726 2.7e-56 222.6 151 74.8
Cc04_g07410 Coffea canephora HOM05D003846 ORTHO05D004726 3.5e-56 222.2 150 76.7
Dinv07363 Davidia involucrata HOM05D003846 ORTHO05D004726 3.5e-56 222.2 150 75.3
MBI19_g21095_MAGBIO Magnolia biondii HOM05D003846 ORTHO05D004726 4.6e-56 221.9 149 75.8
Manes.06G071100 Manihot esculenta HOM05D003846 ORTHO05D004726 1.7e-55 219.9 154 74.7
Nn3g17770 Nelumbo nucifera HOM05D003846 ORTHO05D004726 1.7e-55 219.9 151 74.8
ATR0665G367 Amborella trichopoda HOM05D003846 ORTHO05D004726 2.3e-55 219.5 151 75.5
Actinidia31024 Actinidia chinensis HOM05D003846 ORTHO05D004726 3.0e-55 219.2 152 74.3
PSO063G1115 Papaver somniferum HOM05D003846 ORTHO05D004726 3.9e-55 218.8 152 75.0
CSS0009272 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 8.7e-55 217.6 150 74.0
Lalb_Chr17g0341961 Lupinus albus HOM05D003846 ORTHO05D004726 8.7e-55 217.6 151 74.2
TAR374G1390 Trochodendron aralioides HOM05D003846 ORTHO05D004726 8.7e-55 217.6 151 74.2
CAN.G438.125 Capsicum annuum HOM05D003846 ORTHO05D004726 1.1e-54 217.2 150 75.3
Nitab4.5_0001599g0080 Nicotiana tabacum HOM05D003846 ORTHO05D004726 2.5e-54 216.1 150 75.3
Nitab4.5_0010565g0020 Nicotiana tabacum HOM05D003846 ORTHO05D004726 2.5e-54 216.1 150 75.3
DCAR_023191 Daucus carota HOM05D003846 ORTHO05D004726 3.3e-54 215.7 150 74.0
Eucgr.K02665 Eucalyptus grandis HOM05D003846 ORTHO05D004726 3.3e-54 215.7 138 79.0
Dinv21120 Davidia involucrata HOM05D003846 ORTHO05D004726 4.3e-54 215.3 152 73.7
PSO782G3649 Papaver somniferum HOM05D003846 ORTHO05D004726 5.6e-54 214.9 152 74.3
Dinv40424 Davidia involucrata HOM05D003846 ORTHO05D004726 7.3e-54 214.5 150 73.3
Solyc03g119700.3 Solanum lycopersicum HOM05D003846 ORTHO05D004726 9.6e-54 214.2 150 74.7
Sopen03g038530 Solanum pennellii HOM05D003846 ORTHO05D004726 9.6e-54 214.2 150 74.7
Lalb_Chr10g0099871 Lupinus albus HOM05D003846 ORTHO05D004726 1.3e-53 213.8 151 72.8
PGSC0003DMG400005627 Solanum tuberosum HOM05D003846 ORTHO05D004726 1.3e-53 213.8 150 74.7
Aqoxy3G00349 Aquilegia oxysepala HOM05D003846 ORTHO05D004726 1.6e-53 213.4 151 73.5
Cpa.g.sc1.209 Carica papaya HOM05D003846 ORTHO05D004726 1.6e-53 213.4 126 83.3
Actinidia35079 Actinidia chinensis HOM05D003846 ORTHO05D004726 3.6e-53 212.2 150 72.0
Lj2g0005403 Lotus japonicus HOM05D003846 ORTHO05D004726 3.6e-53 212.2 151 74.2
Peaxi162Scf00015g00824 Petunia axillaris HOM05D003846 ORTHO05D004726 4.8e-53 211.8 150 74.0
Phvul.003G028500 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 4.8e-53 211.8 124 84.7
GSVIVG01008253001 Vitis vinifera HOM05D003846 ORTHO05D004726 4.8e-53 211.8 150 72.0
Gorai.013G080600 Gossypium raimondii HOM05D003846 ORTHO05D004726 6.2e-53 211.5 127 82.7
SalBow1G4777 Salvia bowleyana HOM05D003846 ORTHO05D004726 8.1e-53 211.1 141 75.2
Manes.14G098800 Manihot esculenta HOM05D003846 ORTHO05D004726 1.1e-52 210.7 122 85.2
Atru.chr11.1333 Acer truncatum HOM05D003846 ORTHO05D004726 1.4e-52 210.3 151 73.5
Gohir.A13G053526 Gossypium hirsutum HOM05D003846 ORTHO05D004726 1.8e-52 209.9 127 81.1
Gohir.D13G070700 Gossypium hirsutum HOM05D003846 ORTHO05D004726 1.8e-52 209.9 127 81.9
Actinidia39818 Actinidia chinensis HOM05D003846 ORTHO05D004726 3.1e-52 209.1 138 77.5
Oeu024319.1 Olea europaea HOM05D003846 ORTHO05D004726 4.0e-52 208.8 139 74.1
CDE11G1133 Ceratophyllum demersum HOM05D003846 ORTHO05D004726 6.9e-52 208.0 153 70.6
Gohir.D13G070400 Gossypium hirsutum HOM05D003846 ORTHO05D004726 6.9e-52 208.0 127 80.3
MSTRG.9269 Avicennia marina HOM05D003846 ORTHO05D004726 1.2e-51 207.2 148 71.6
CSS0028088 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 1.2e-51 207.2 122 83.6
Duzib204G0001 Durio zibethinus HOM05D003846 ORTHO05D004726 1.2e-51 207.2 127 79.5
Duzib248G0399 Durio zibethinus HOM05D003846 ORTHO05D004726 1.2e-51 207.2 127 79.5
Psat2g088560 Pisum sativum HOM05D003846 ORTHO05D004726 1.2e-51 207.2 146 74.0
unitig_21.g20429 Utricularia gibba HOM05D003846 ORTHO05D004726 1.2e-51 207.2 155 68.4
HanXRQChr06g0171111 Helianthus annuus HOM05D003846 ORTHO05D004726 1.5e-51 206.8 149 71.8
Lsat_1_v5_gn_3_40660 Lactuca sativa HOM05D003846 ORTHO05D004726 1.5e-51 206.8 149 73.2
Sc04g0006620 Simmondsia chinensis HOM05D003846 ORTHO05D004726 1.5e-51 206.8 151 72.2
Gohir.A13G053470 Gossypium hirsutum HOM05D003846 ORTHO05D004726 2.0e-51 206.5 127 81.1
Sp5g23760 Schrenkiella parvula HOM05D003846 ORTHO05D004726 2.6e-51 206.1 151 69.5
Gorai.013G080900 Gossypium raimondii HOM05D003846 ORTHO05D004726 3.4e-51 205.7 127 80.3
BcaB05g24403 Brassica carinata HOM05D003846 ORTHO05D004726 5.8e-51 204.9 152 70.4
Glyma.02G098100 Glycine max HOM05D003846 ORTHO05D004726 5.8e-51 204.9 153 70.6
Medtr5g054770 Medicago truncatula HOM05D003846 ORTHO05D004726 7.6e-51 204.5 152 70.4
Potri.008G117800 Populus trichocarpa HOM05D003846 ORTHO05D004726 7.6e-51 204.5 122 83.6
VMungo1215G1161 Vigna mungo HOM05D003846 ORTHO05D004726 7.6e-51 204.5 124 82.3
EL10Ac6g14463 Beta vulgaris HOM05D003846 ORTHO05D004726 9.9e-51 204.1 151 68.9
Ciclev10032968m.g Citrus clementina HOM05D003846 ORTHO05D004726 9.9e-51 204.1 127 77.2
Lj9A429T51 Lonicera japonica HOM05D003846 ORTHO05D004726 1.3e-50 203.8 151 70.9
TPR.G38292 Trifolium pratense HOM05D003846 ORTHO05D004726 1.3e-50 203.8 139 74.1
AT1G68660 Arabidopsis thaliana HOM05D003846 ORTHO05D004726 1.7e-50 203.4 152 69.7
BraA07t30817Z Brassica rapa HOM05D003846 ORTHO05D004726 1.7e-50 203.4 152 67.8
Glyma.01G084700 Glycine max HOM05D003846 ORTHO05D004726 1.7e-50 203.4 153 69.9
THA.LOC104821956 Tarenaya hassleriana HOM05D003846 ORTHO05D004726 1.7e-50 203.4 149 69.8
BcaB03g15438 Brassica carinata HOM05D003846 ORTHO05D004726 2.2e-50 203.0 153 68.0
C06p37450 Brassica napus HOM05D003846 ORTHO05D004726 2.2e-50 203.0 153 69.3
BolC2t08590H Brassica oleracea HOM05D003846 ORTHO05D004726 2.2e-50 203.0 152 69.1
BolC6t38848H Brassica oleracea HOM05D003846 ORTHO05D004726 2.2e-50 203.0 153 69.3
AUR62002909 Chenopodium quinoa HOM05D003846 ORTHO05D004726 2.2e-50 203.0 150 69.3
COL.COLO4_07882 Corchorus olitorius HOM05D000199 ORTHO05D000550 2.2e-50 203.0 127 78.0
Potri.010G128500 Populus trichocarpa HOM05D003846 ORTHO05D004726 2.2e-50 203.0 153 70.6
Prupe.1G306800 Prunus persica HOM05D003846 ORTHO05D004726 2.9e-50 202.6 149 69.8
Duzib251G0345 Durio zibethinus HOM05D003846 ORTHO05D004726 3.8e-50 202.2 151 70.2
Thhalv10019264m.g Eutrema salsugineum HOM05D003846 ORTHO05D004726 4.9e-50 201.8 151 68.2
Thecc.02G359500 Theobroma cacao HOM05D003846 ORTHO05D004726 4.9e-50 201.8 122 81.1
A07p31880 Brassica napus HOM05D003846 ORTHO05D004726 6.4e-50 201.4 153 68.6
ECA246G4193 Erigeron canadensis HOM05D003846 ORTHO05D004726 6.4e-50 201.4 149 70.5
A02p15260 Brassica napus HOM05D003846 ORTHO05D004726 8.4e-50 201.1 150 68.0
BraA02t06588Z Brassica rapa HOM05D003846 ORTHO05D004726 8.4e-50 201.1 150 68.0
CARHR061470 Cardamine hirsuta HOM05D003846 ORTHO05D004726 1.1e-49 200.7 152 69.1
Sabra10G0097700 Salix brachista HOM05D003846 ORTHO05D004726 1.1e-49 200.7 122 80.3
AagrBONN_evm.TU.Sc2ySwM_369.545 Anthoceros agrestis HOM05D003846 ORTHO05D004726 1.4e-49 200.3 118 85.6
AL2G27580 Arabidopsis lyrata HOM05D003846 ORTHO05D004726 1.4e-49 200.3 152 68.4
BcaC03g14976 Brassica carinata HOM05D003846 ORTHO05D004726 1.9e-49 199.9 140 72.9
SEGI_01063 Sequoiadendron giganteum HOM05D003846 ORTHO05D004726 1.9e-49 199.9 139 72.7
TWI31G0653 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 1.9e-49 199.9 151 70.2
TWI79G0122 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 1.9e-49 199.9 151 70.2
BcaB03g15443 Brassica carinata HOM05D003846 ORTHO05D004726 5.4e-49 198.4 128 76.6
Ah.03g137840 Amaranthus hybridus HOM05D003846 ORTHO05D004726 7.1e-49 198.0 151 68.2
Ah.02g127070 Amaranthus hybridus HOM05D003846 ORTHO05D004726 9.3e-49 197.6 152 67.8
Rhsim12G0144000 Rhododendron simsii HOM05D003846 ORTHO05D004726 1.2e-48 197.2 137 73.7
unitig_744.g24407 Utricularia gibba HOM05D003846 ORTHO05D004726 1.2e-48 197.2 156 67.3
Aa31LG6G7320 Aethionema arabicum HOM05D003846 ORTHO05D004726 1.6e-48 196.8 124 77.4
C02p25100 Brassica napus HOM05D003846 ORTHO05D004726 2.1e-48 196.4 127 76.4
Carub.0002s1520 Capsella rubella HOM05D003846 ORTHO05D004726 2.1e-48 196.4 128 75.0
Migut.D01214 Erythranthe guttata HOM05D003846 ORTHO05D004726 2.7e-48 196.1 117 84.6
MELO3C012223.2 Cucumis melo HOM05D003846 ORTHO05D004726 4.6e-48 195.3 152 66.4
RcHm_v2.0_Chr4g0435651 Rosa chinensis HOM05D003846 ORTHO05D004726 4.6e-48 195.3 151 70.2
HPP92_016307 Vanilla planifolia HOM05D003846 ORTHO05D004726 1.0e-47 194.1 118 82.2
CANSAT64G1970 Cannabis sativa HOM05D003846 ORTHO05D004726 1.3e-47 193.7 125 78.4
Sed0009794 Sechium edule HOM05D003846 ORTHO05D004726 2.3e-47 193.0 151 68.2
arahy.Tifrunner.gnm1.ann1.72UZVS Arachis hypogaea HOM05D003846 ORTHO05D004726 3.0e-47 192.6 119 80.7
ClCG05G022950 Citrullus lanatus HOM05D003846 ORTHO05D004726 3.9e-47 192.2 113 81.4
MD16G1046400 Malus domestica HOM05D003846 ORTHO05D004726 5.1e-47 191.8 151 68.2
HPP92_016288 Vanilla planifolia HOM05D003846 ORTHO05D004726 5.1e-47 191.8 118 81.4
MD13G1045100 Malus domestica HOM05D003846 ORTHO05D004726 1.1e-46 190.7 151 66.9
AUR62035268 Chenopodium quinoa HOM05D003846 ORTHO05D004726 1.5e-46 190.3 135 73.3
SGA_v2.0_scaffold63G21786 Striga asiatica HOM05D003846 ORTHO05D004726 1.9e-46 189.9 121 77.7
Zm00001eb041630 Zea mays HOM05D003846 ORTHO05D004726 1.9e-46 189.9 155 64.5
Sed0019100 Sechium edule HOM05D003846 ORTHO05D004726 2.5e-46 189.5 118 78.8
Mapoly0068s0048 Marchantia polymorpha HOM05D003846 ORTHO05D004726 3.3e-46 189.1 123 78.0
arahy.Tifrunner.gnm1.ann1.6C9V7B Arachis hypogaea HOM05D003846 ORTHO05D004726 5.6e-46 188.3 151 66.9
Hund25092 Selenicereus undatus HOM05D003846 ORTHO05D004726 2.1e-45 186.4 149 65.8
Os08g0432500 Oryza sativa ssp. japonica HOM05D003846 ORTHO05D004726 1.8e-44 183.3 118 76.3
vmacro16453 Vaccinium macrocarpon HOM05D003846 ORTHO05D004726 3.1e-44 182.6 192 54.7
Zm00001eb179570 Zea mays HOM05D003846 ORTHO05D004726 3.1e-44 182.6 164 59.1
SMO356G0199 Selaginella moellendorffii HOM05D003846 ORTHO05D004726 9.9e-43 177.6 112 75.0
Pp3c10_21560 Physcomitrium patens HOM05D003846 ORTHO05D004726 1.7e-42 176.8 113 76.1
Pp3c20_21920 Physcomitrium patens HOM05D003846 ORTHO05D004726 4.2e-41 172.2 112 73.2
BcaC08g45948 Brassica carinata HOM05D003846 ORTHO05D004726 5.5e-41 171.8 136 67.6
Sed0007398 Sechium edule HOM05D003846 ORTHO05D004726 4.6e-40 168.7 89 91.0
Lj6A764T53 Lonicera japonica HOM05D003846 ORTHO05D004726 6.0e-40 168.3 122 68.0
DCAR_011545 Daucus carota HOM05D003846 ORTHO05D004726 8.1e-37 157.9 82 91.5
CBR_g40856 Chara braunii HOM05D003846 ORTHO05D004726 1.0e-34 151.0 123 60.2
GSVIVG01011936001 Vitis vinifera HOM05D003846 ORTHO05D004726 1.3e-31 140.6 151 55.0
PRCOL_00003868 Prasinoderma coloniale HOM05D003846 ORTHO05D004726 6.9e-28 128.3 120 57.5
HPP92_027194 Vanilla planifolia HOM05D003846 ORTHO05D004726 6.9e-28 128.3 92 68.5
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 2.5e-25 119.8 108 62.0
Lsat_1_v5_gn_4_145001 Lactuca sativa HOM05D003846 ORTHO05D004726 5.5e-25 118.6 80 77.5
Manes.11G040441 Manihot esculenta HOM05D000085 ORTHO05D249439 1.3e-23 114.0 95 55.8
Manes.11G039928 Manihot esculenta HOM05D000085 ORTHO05D250131 5.1e-23 112.1 115 51.3
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 6.7e-23 111.7 83 71.1
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 6.7e-23 111.7 83 71.1
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 1.9e-22 110.2 82 70.7
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 1.9e-22 110.2 82 70.7
Cre17.g696400 Chlamydomonas reinhardtii HOM05D003846 ORTHO05D004726 4.3e-22 109.0 111 53.2
Manes.11G040408 Manihot esculenta HOM05D003846 ORTHO05D004726 5.7e-22 108.6 88 59.1
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 7.7e-19 98.2 67 77.6
TPR.G20310 Trifolium pratense HOM05D003846 ORTHO05D004726 7.7e-19 98.2 54 85.2
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 3.2e-17 92.8 76 67.1
CDE05G0888 Ceratophyllum demersum HOM05D003846 ORTHO05D004726 1.6e-16 90.5 133 44.4
Lj6A762T41 Lonicera japonica HOM05D003846 ORTHO05D004726 2.0e-14 83.6 54 72.2
Aa31sc562G10 Aethionema arabicum HOM05D003846 ORTHO05D004726 3.1e-12 76.3 48 70.8
FAN12G0550 Fragaria x ananassa HOM05D003846 ORTHO05D004726 1.6e-08 63.9 63 60.3
C06p41190 Brassica napus HOM05D003846 ORTHO05D004726 2.3e-07 60.1 40 70.0
Nn4g23759 Nelumbo nucifera HOM05D003846 ORTHO05D004726 5.1e-07 58.9 64 54.7


User provided reference genes

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