Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 5.4e-165 584.3 310 100.0
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 6.8e-160 567.4 310 96.8
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 2.3e-155 552.4 310 94.8
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 1.7e-150 536.2 310 91.6
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 7.1e-149 530.8 310 90.0
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 1.7e-147 526.2 310 91.3
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 4.7e-145 518.1 310 87.4
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 3.1e-144 515.4 310 86.8
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 1.6e-140 503.1 310 85.8
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 6.0e-140 501.1 310 85.8
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 1.1e-138 496.9 310 84.2
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.8e-136 489.6 310 83.2
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 4.4e-135 485.0 310 82.3
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 1.3e-134 483.4 310 82.3
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 4.6e-132 474.9 310 80.6
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 3.0e-131 472.2 312 80.1
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 5.1e-131 471.5 309 80.3
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 1.1e-130 470.3 310 79.7
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 1.9e-130 469.5 310 79.0
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 3.3e-130 468.8 310 78.7
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 4.3e-130 468.4 310 80.0
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 1.3e-129 466.8 310 78.7
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 4.8e-129 464.9 310 79.0
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 3.1e-128 462.2 310 79.0
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 9.0e-128 460.7 310 79.4
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 1.5e-127 459.9 310 79.4
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 2.0e-127 459.5 310 78.1
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 4.5e-127 458.4 310 77.7
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 9.9e-127 457.2 310 76.1
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 1.3e-126 456.8 317 76.7
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 1.3e-126 456.8 317 76.7
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 1.7e-126 456.4 310 78.7
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.7e-126 456.4 310 78.1
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 2.2e-126 456.1 310 76.5
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 2.2e-126 456.1 310 77.1
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 4.9e-126 454.9 318 76.1
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 1.9e-125 453.0 310 78.7
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 4.2e-125 451.8 310 77.4
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 4.2e-125 451.8 310 77.1
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 5.4e-125 451.4 310 77.4
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 5.4e-125 451.4 311 77.8
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 7.1e-125 451.1 318 76.1
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 9.3e-125 450.7 310 75.8
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 9.3e-125 450.7 310 76.1
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 1.6e-124 449.9 310 76.5
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.5e-124 448.7 310 75.8
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 6.0e-124 448.0 310 76.1
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 7.9e-124 447.6 311 76.8
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 1.3e-123 446.8 318 75.2
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 1.8e-123 446.4 310 75.5
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 1.8e-123 446.4 318 74.8
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 2.3e-123 446.0 310 74.5
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 5.1e-123 444.9 309 75.1
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.1e-122 443.7 318 75.2
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.9e-122 443.0 318 74.8
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 1.9e-122 443.0 311 75.9
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 3.3e-122 442.2 311 74.6
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 3.3e-122 442.2 310 74.8
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 4.3e-122 441.8 318 73.6
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 4.3e-122 441.8 310 74.5
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 5.6e-122 441.4 316 74.1
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 1.6e-121 439.9 311 74.9
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 1.6e-121 439.9 318 73.3
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 2.8e-121 439.1 319 73.0
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 2.8e-121 439.1 318 74.2
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 2.8e-121 439.1 319 74.0
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 8.1e-121 437.6 312 73.4
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 8.1e-121 437.6 362 67.1
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 1.1e-120 437.2 318 75.2
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 1.4e-120 436.8 319 73.7
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 1.4e-120 436.8 319 73.4
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 2.4e-120 436.0 310 74.2
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 2.4e-120 436.0 318 72.0
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 4.0e-120 435.3 319 73.0
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 6.9e-120 434.5 318 71.4
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 6.9e-120 434.5 318 73.0
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 7.6e-119 431.0 311 73.0
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.3e-118 430.3 345 67.5
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 4.9e-118 428.3 318 72.6
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 9.3e-117 424.1 318 70.4
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 2.7e-116 422.5 310 70.6
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 4.6e-116 421.8 310 71.0
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 1.0e-115 420.6 297 74.4
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 2.3e-115 419.5 310 73.9
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 2.3e-115 419.5 310 75.8
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 6.7e-115 417.9 310 71.3
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 1.5e-114 416.8 294 74.8
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 2.5e-114 416.0 285 76.5
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 4.3e-114 415.2 294 74.5
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 5.6e-114 414.8 312 71.2
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 5.6e-114 414.8 294 74.8
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 9.6e-114 414.1 307 71.0
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 9.6e-114 414.1 310 70.3
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 1.6e-113 413.3 310 71.0
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 3.7e-113 412.1 312 71.5
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 3.1e-112 409.1 312 71.2
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 2.9e-110 402.5 278 77.3
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 8.4e-110 401.0 316 67.7
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.9e-109 399.8 315 67.0
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 5.5e-109 398.3 286 73.8
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 1.2e-108 397.1 740 40.5
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.6e-108 396.7 315 67.0
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 3.5e-108 395.6 286 72.7
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 8.7e-107 391.0 321 66.4
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 1.1e-106 390.6 262 78.2
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 4.3e-106 388.7 319 69.6
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 1.3e-105 387.1 281 74.0
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 4.1e-104 382.1 312 66.7
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 4.1e-104 382.1 279 72.0
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 2.0e-103 379.8 310 65.2
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 7.6e-103 377.9 256 77.7
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 3.9e-99 365.5 310 64.8
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 5.1e-99 365.2 276 68.8
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 8.7e-99 364.4 262 72.5
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 6.9e-96 354.8 310 65.5
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 2.9e-94 349.4 262 68.3
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 1.6e-92 343.6 316 61.1
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 1.8e-91 340.1 314 62.7
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 3.0e-91 339.3 256 70.3
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 8.5e-86 321.2 228 74.6
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.9e-85 320.1 310 59.4
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.3e-81 307.4 310 56.8
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 2.2e-81 306.6 242 67.4
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 3.1e-80 302.8 221 70.6
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 8.8e-75 284.6 391 50.1
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 5.7e-74 282.0 318 52.5
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 1.2e-68 264.2 319 48.0
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 1.5e-66 257.3 309 51.5
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 4.2e-61 239.2 179 76.0
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 2.0e-58 230.3 292 47.3
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 1.6e-55 220.7 186 67.2
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 1.4e-51 207.6 249 54.2
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 8.9e-51 204.9 150 77.3
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 4.9e-49 199.1 156 71.2
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 6.0e-47 192.2 120 89.2
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.3e-46 191.0 122 86.1
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 4.4e-42 176.0 141 70.2
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 6.6e-38 162.2 250 47.2
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 8.6e-38 161.8 244 42.6
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 5.2e-35 152.5 115 63.5
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 5.4e-32 142.5 310 33.5
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 6.6e-30 135.6 127 64.6
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 8.6e-30 135.2 149 60.4
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 6.8e-27 125.6 91 72.5
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 2.6e-26 123.6 100 62.0
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.6e-26 123.6 110 60.9
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 1.1e-24 118.2 93 66.7
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 4.6e-23 112.8 103 64.1
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 2.3e-22 110.5 89 64.0
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.3e-14 84.0 58 70.7
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 3.0e-14 83.6 62 72.6
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 6.6e-14 82.4 394 24.4
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 4.3e-13 79.7 84 53.6
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 6.4e-09 65.9 120 39.2
BraA05t20843Z Brassica rapa HOM05D000051 ORTHO05D000015 1.3e-06 58.2 35 68.6


User provided reference genes

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