Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g034720 Pisum sativum HOM05D001186 ORTHO05D000971 1.1e-118 430.3 253 100.0
TPR.G15166 Trifolium pratense HOM05D001186 ORTHO05D000971 6.5e-68 261.5 257 70.0
Medtr6g084200 Medicago truncatula HOM05D001186 ORTHO05D000971 1.1e-62 244.2 254 66.9
Ca_25487_v3 Cicer arietinum L. HOM05D001186 ORTHO05D000971 6.1e-50 201.8 256 53.1
Lj2g0004597 Lotus japonicus HOM05D001186 ORTHO05D000971 1.3e-44 184.1 257 59.9
VMungo0464G1252 Vigna mungo HOM05D001186 ORTHO05D000971 2.1e-42 176.8 252 49.2
QL10p025510 Quercus lobata HOM05D001186 ORTHO05D000971 4.9e-31 139.0 253 39.9
Glyma.07G092500 Glycine max HOM05D001186 ORTHO05D000971 3.2e-30 136.3 261 42.5
Glyma.09G183700 Glycine max HOM05D001186 ORTHO05D000971 6.0e-29 132.1 256 44.1
Lalb_Chr22g0353121 Lupinus albus HOM05D001186 ORTHO05D000971 1.3e-28 131.0 259 43.6
Haze_18687 Corylus avellana HOM05D001186 ORTHO05D000971 6.2e-26 122.1 231 43.3
Gohir.D08G105100 Gossypium hirsutum HOM05D001186 ORTHO05D000971 2.6e-24 116.7 253 40.7
Gorai.004G112000 Gossypium raimondii HOM05D001186 ORTHO05D000971 3.4e-24 116.3 253 40.7
Cfa019761 Carpinus fangiana HOM05D001186 ORTHO05D000971 5.8e-24 115.5 231 43.7
Dinv28111 Davidia involucrata HOM05D001186 ORTHO05D000971 1.7e-23 114.0 254 42.1
Gohir.A08G093800 Gossypium hirsutum HOM05D001186 ORTHO05D000971 1.7e-23 114.0 253 40.7
Duzib205G0230 Durio zibethinus HOM05D001186 ORTHO05D000971 2.4e-22 110.2 255 41.2
Manes.01G010900 Manihot esculenta HOM05D001186 ORTHO05D000971 2.4e-22 110.2 255 42.0
Hma1.2p1_0653F.1_g196240 Hydrangea macrophylla HOM05D001186 ORTHO05D000971 4.6e-21 105.9 258 39.1
Sed0003786 Sechium edule HOM05D001186 ORTHO05D000971 1.9e-19 100.5 270 42.6
Cpa.g.c39771 Carica papaya HOM05D001186 ORTHO05D000971 5.6e-19 99.0 245 37.1
Phvul.004G156300 Phaseolus vulgaris HOM05D001186 ORTHO05D000971 7.3e-19 98.6 167 42.5
Cpa.g.sc3.505 Carica papaya HOM05D001186 ORTHO05D000971 8.1e-18 95.1 258 35.7
Lalb_Chr05g0222471 Lupinus albus HOM05D001186 ORTHO05D000971 1.4e-17 94.4 233 34.8
Aqoxy3G00278 Aquilegia oxysepala HOM05D001186 ORTHO05D000971 4.0e-17 92.8 229 46.7
Cpa.g.c35103 Carica papaya HOM05D001186 ORTHO05D000971 6.8e-17 92.0 181 35.9
DCAR_023208 Daucus carota HOM05D001186 ORTHO05D000971 1.5e-16 90.9 259 31.3
Sabra12G0039700 Salix brachista HOM05D001186 ORTHO05D000971 7.6e-16 88.6 228 37.3
Ciclev10023791m.g Citrus clementina HOM05D001186 ORTHO05D000971 9.9e-16 88.2 228 32.9
MELO3C010713.2 Cucumis melo HOM05D001186 ORTHO05D000971 1.7e-15 87.4 257 37.7
Potri.015G046600 Populus trichocarpa HOM05D001186 ORTHO05D000971 2.2e-15 87.0 198 39.9
TAR629G3519 Trochodendron aralioides HOM05D001186 ORTHO05D000971 3.8e-15 86.3 252 35.3
FAN04G0269 Fragaria x ananassa HOM05D001186 ORTHO05D000971 1.4e-14 84.3 91 82.4
Oeu008243.1 Olea europaea HOM05D001186 ORTHO05D000971 1.4e-14 84.3 229 31.9
Dinv15684 Davidia involucrata HOM05D012236 ORTHO05D001602 4.1e-14 82.8 170 48.2
Potri.012G055900 Populus trichocarpa HOM05D001186 ORTHO05D000971 7.1e-14 82.0 226 39.8
Ciclev10023693m.g Citrus clementina HOM05D001186 ORTHO05D000971 9.2e-14 81.6 224 32.1
MBI09_g40766_MAGBIO Magnolia biondii HOM05D001186 ORTHO05D000971 9.2e-14 81.6 255 37.6
Thecc.03G036500 Theobroma cacao HOM05D001186 ORTHO05D000971 9.2e-14 81.6 176 36.4
Duzib084G0272 Durio zibethinus HOM05D001186 ORTHO05D000971 2.7e-13 80.1 254 35.4
FAN08G3585 Fragaria x ananassa HOM05D001186 ORTHO05D000971 4.6e-13 79.3 93 81.7
FAN13G2378 Fragaria x ananassa HOM05D001186 ORTHO05D000971 7.8e-13 78.6 95 80.0
FAN18G1152 Fragaria x ananassa HOM05D001186 ORTHO05D000971 7.8e-13 78.6 95 80.0
FAN18G4498 Fragaria x ananassa HOM05D001186 ORTHO05D000971 1.0e-12 78.2 96 79.2
TAR371G0320 Trochodendron aralioides HOM05D001186 ORTHO05D000971 1.3e-12 77.8 231 32.0
Sabra15G0039100 Salix brachista HOM05D001186 ORTHO05D000971 1.7e-12 77.4 203 37.4
FvH4_5g11980 Fragaria vesca HOM05D001186 ORTHO05D000971 3.0e-12 76.6 95 78.9
CiPaw.15G086400 Carya illinoinensis HOM05D001186 ORTHO05D000971 5.1e-12 75.9 262 27.1
COL.COLO4_32831 Corchorus olitorius HOM05D001186 ORTHO05D000971 8.7e-12 75.1 270 34.1
Oeu001004.1 Olea europaea HOM05D001186 ORTHO05D000971 8.7e-12 75.1 95 46.3
SalBow8G5321 Salvia bowleyana HOM05D001186 ORTHO05D000971 3.3e-11 73.2 221 29.4
FAN07G0491 Fragaria x ananassa HOM05D001186 ORTHO05D000971 4.3e-11 72.8 218 30.7
Manes.14G103400 Manihot esculenta HOM05D001186 ORTHO05D000971 4.3e-11 72.8 253 33.6
Thecc.02G227800 Theobroma cacao HOM05D001186 ORTHO05D000971 4.3e-11 72.8 228 30.3
FvH4_4g27220 Fragaria vesca HOM05D001186 ORTHO05D000971 7.3e-11 72.0 221 29.9
FAN12G0246 Fragaria x ananassa HOM05D001186 ORTHO05D000971 7.3e-11 72.0 221 30.3
FAN12G0708 Fragaria x ananassa HOM05D001186 ORTHO05D000971 7.3e-11 72.0 221 30.3
PGR142G3041 Punica granatum HOM05D001186 ORTHO05D000971 7.3e-11 72.0 178 37.6
CsaV3_1G003880 Cucumis sativus L. HOM05D001406 ORTHO05D002467 9.6e-11 71.6 92 78.3
FAN22G0160 Fragaria x ananassa HOM05D001186 ORTHO05D000971 9.6e-11 71.6 238 31.5
FAN17G0570 Fragaria x ananassa HOM05D001186 ORTHO05D000971 1.2e-10 71.2 227 32.2
Nn3g17865 Nelumbo nucifera HOM05D001186 ORTHO05D000971 2.1e-10 70.5 188 46.8
QL01p041163 Quercus lobata HOM05D001186 ORTHO05D000971 2.1e-10 70.5 223 29.6
Peaxi162Scf00015g00106 Petunia axillaris HOM05D001186 ORTHO05D000971 2.8e-10 70.1 169 33.1
Prupe.5G222000 Prunus persica HOM05D001186 ORTHO05D000971 3.6e-10 69.7 159 33.3
ClCG06G014760 Citrullus lanatus HOM05D001186 ORTHO05D000971 6.2e-10 68.9 246 40.7
Potri.010G123700 Populus trichocarpa HOM05D001186 ORTHO05D000971 6.2e-10 68.9 253 34.0
CSS0040830 Camellia sinensis var. sinensis HOM05D001186 ORTHO05D000971 8.1e-10 68.6 262 29.8
Lsat_1_v5_gn_2_14741 Lactuca sativa HOM05D001186 ORTHO05D000971 8.1e-10 68.6 185 32.4
Sed0016046 Sechium edule HOM05D001186 ORTHO05D000971 8.1e-10 68.6 154 35.7
CSS0012233 Camellia sinensis var. sinensis HOM05D001186 ORTHO05D000971 1.1e-09 68.2 233 35.2
CiPaw.16G065400 Carya illinoinensis HOM05D001186 ORTHO05D000971 1.1e-09 68.2 238 31.9
Duzib268G0437 Durio zibethinus HOM05D001186 ORTHO05D000971 1.1e-09 68.2 228 29.4
Gohir.A05G321500 Gossypium hirsutum HOM05D001186 ORTHO05D000971 1.4e-09 67.8 226 33.6
Cc11_g10020 Coffea canephora HOM05D001186 ORTHO05D000971 2.4e-09 67.0 132 37.1
THA.LOC104806066 Tarenaya hassleriana HOM05D001186 ORTHO05D000971 3.1e-09 66.6 265 28.3
AT3G18360 Arabidopsis thaliana HOM05D001186 ORTHO05D000971 4.0e-09 66.2 224 29.9
CsaV3_2G025160 Cucumis sativus L. HOM05D001186 ORTHO05D000971 4.0e-09 66.2 241 39.8
Gorai.009G347500 Gossypium raimondii HOM05D001186 ORTHO05D000971 4.0e-09 66.2 226 32.3
RcHm_v2.0_Chr4g0435011 Rosa chinensis HOM05D001186 ORTHO05D000971 4.0e-09 66.2 226 32.3
Solyc06g069100.3 Solanum lycopersicum HOM05D000010 ORTHO05D000302 5.2e-09 65.9 192 35.4
CARHR093710 Cardamine hirsuta HOM05D001186 ORTHO05D000971 6.9e-09 65.5 301 28.9
unitig_22.g6558 Utricularia gibba HOM05D001186 ORTHO05D000971 6.9e-09 65.5 208 27.9
ECA233G1982 Erigeron canadensis HOM05D001186 ORTHO05D000971 9.0e-09 65.1 241 28.2
Lsat_1_v5_gn_8_40921 Lactuca sativa HOM05D001186 ORTHO05D000971 9.0e-09 65.1 222 27.9
PGSC0003DMG401028780 Solanum tuberosum HOM05D001186 ORTHO05D000971 9.0e-09 65.1 204 31.9
Manes.06G067000 Manihot esculenta HOM05D001186 ORTHO05D000971 1.2e-08 64.7 239 27.2
Rhsim08G0133100 Rhododendron simsii HOM05D001186 ORTHO05D000971 1.2e-08 64.7 89 41.6
Lalb_Chr04g0254691 Lupinus albus HOM05D001186 ORTHO05D000971 1.5e-08 64.3 246 26.8
Lalb_Chr16g0387891 Lupinus albus HOM05D001186 ORTHO05D000971 1.5e-08 64.3 217 32.7
Rhsim03G0008700 Rhododendron simsii HOM05D001186 ORTHO05D000971 2.0e-08 63.9 143 47.6
QL01p041179 Quercus lobata HOM05D001186 ORTHO05D000971 2.6e-08 63.5 191 31.4
AL3G31640 Arabidopsis lyrata HOM05D001186 ORTHO05D000971 3.4e-08 63.2 293 26.3
PGSC0003DMG400005637 Solanum tuberosum HOM05D001186 ORTHO05D000971 3.4e-08 63.2 152 34.2
EL10Ac5g11455 Beta vulgaris HOM05D001186 ORTHO05D000971 4.4e-08 62.8 221 31.7
Carub.0003s1814 Capsella rubella HOM05D001186 ORTHO05D000971 4.4e-08 62.8 273 30.4
Dinv31630 Davidia involucrata HOM05D001186 ORTHO05D000971 4.4e-08 62.8 109 36.7
CAN.G423.13 Capsicum annuum HOM05D001926 ORTHO05D000971 5.8e-08 62.4 152 39.5
Haze_17495 Corylus avellana HOM05D001186 ORTHO05D000971 5.8e-08 62.4 257 35.0
Nitab4.5_0002906g0010 Nicotiana tabacum HOM05D001186 ORTHO05D000971 7.6e-08 62.0 222 28.8
TWI81G0318 Tripterygium wilfordii HOM05D001186 ORTHO05D000971 7.6e-08 62.0 32 87.5
CAN.G1425.6 Capsicum annuum HOM05D001186 ORTHO05D000971 9.9e-08 61.6 179 31.8
CiPaw.15G131400 Carya illinoinensis HOM05D001186 ORTHO05D000971 9.9e-08 61.6 233 38.2
MELO3C017312.2 Cucumis melo HOM05D001186 ORTHO05D000971 9.9e-08 61.6 232 40.5
MD16G1041600 Malus domestica HOM05D001186 ORTHO05D000971 9.9e-08 61.6 233 30.0
Lalb_Chr21g0308871 Lupinus albus HOM05D001186 ORTHO05D000971 1.3e-07 61.2 233 26.6
PSO541G6297 Papaver somniferum HOM05D001186 ORTHO05D000971 1.7e-07 60.8 41 65.9
PSO675G7373 Papaver somniferum HOM05D001186 ORTHO05D000971 1.7e-07 60.8 41 65.9
ClCG05G022640 Citrullus lanatus HOM05D001186 ORTHO05D000971 2.9e-07 60.1 86 40.7
Aa31LG8G5190 Aethionema arabicum HOM05D001186 ORTHO05D000971 3.8e-07 59.7 283 26.5
MSTRG.847 Avicennia marina HOM05D001186 ORTHO05D000971 3.8e-07 59.7 252 27.0
COL.COLO4_07638 Corchorus olitorius HOM05D001186 ORTHO05D000971 3.8e-07 59.7 203 28.6
CANSAT01G1945 Cannabis sativa HOM05D001186 ORTHO05D000971 4.9e-07 59.3 92 39.1
Gohir.D05G323700 Gossypium hirsutum HOM05D001186 ORTHO05D000971 4.9e-07 59.3 226 31.4
Sabra10G0093700 Salix brachista HOM05D001186 ORTHO05D000971 4.9e-07 59.3 231 39.8
Sed0028138 Sechium edule HOM05D001186 ORTHO05D000971 6.4e-07 58.9 198 28.3
CiPaw.15G086500 Carya illinoinensis HOM05D001186 ORTHO05D000971 8.4e-07 58.5 227 26.0
arahy.Tifrunner.gnm1.ann1.407XUT Arachis hypogaea HOM05D001186 ORTHO05D000971 1.1e-06 58.2 116 44.8
arahy.Tifrunner.gnm1.ann1.6A166J Arachis hypogaea HOM05D001186 ORTHO05D000971 1.1e-06 58.2 116 44.8
ECA238G3992 Erigeron canadensis HOM05D001186 ORTHO05D000971 1.1e-06 58.2 31 83.9
Nn4g23866 Nelumbo nucifera HOM05D001186 ORTHO05D000971 1.4e-06 57.8 226 35.8
CAN.G1425.4 Capsicum annuum HOM05D001186 ORTHO05D000971 1.9e-06 57.4 170 31.2
MELO3C027191.2 Cucumis melo HOM05D001186 ORTHO05D000971 1.9e-06 57.4 89 36.0
Oeu046984.1 Olea europaea HOM05D001186 ORTHO05D000971 1.9e-06 57.4 145 32.4
Phvul.007G028200 Phaseolus vulgaris HOM05D001186 ORTHO05D000971 1.9e-06 57.4 227 28.6
HPP92_004813 Vanilla planifolia HOM05D001186 ORTHO05D000971 1.9e-06 57.4 58 50.0
Glyma.13G039800 Glycine max HOM05D001186 ORTHO05D000971 2.4e-06 57.0 82 42.7
Lj1g0004766 Lotus japonicus HOM05D001186 ORTHO05D000971 2.4e-06 57.0 85 41.2
VMungo1309G1275 Vigna mungo HOM05D001186 ORTHO05D000971 2.4e-06 57.0 85 41.2
CsaV3_5G034400 Cucumis sativus L. HOM05D001186 ORTHO05D000971 3.2e-06 56.6 33 72.7
Dinv21073 Davidia involucrata HOM05D001186 ORTHO05D000971 3.2e-06 56.6 65 47.7
FvH4_2g14340 Fragaria vesca HOM05D001186 ORTHO05D000971 3.2e-06 56.6 86 40.7
FAN20G2326 Fragaria x ananassa HOM05D001186 ORTHO05D000971 3.2e-06 56.6 86 40.7
FAN24G3322 Fragaria x ananassa HOM05D001186 ORTHO05D000971 3.2e-06 56.6 86 40.7
FAN27G1120 Fragaria x ananassa HOM05D001186 ORTHO05D000971 3.2e-06 56.6 86 40.7
Glyma.06G124400 Glycine max HOM05D001186 ORTHO05D000971 3.2e-06 56.6 101 36.6
Lj5g0015241 Lotus japonicus HOM05D001186 ORTHO05D000971 3.2e-06 56.6 227 27.8
BcaB06g25879 Brassica carinata HOM05D001186 ORTHO05D000971 4.2e-06 56.2 110 42.7
Glyma.04G239400 Glycine max HOM05D001186 ORTHO05D000971 4.2e-06 56.2 113 35.4
Potri.002G070600 Populus trichocarpa HOM05D001186 ORTHO05D000971 4.2e-06 56.2 95 38.9
Prupe.1G312500 Prunus persica HOM05D001186 ORTHO05D000971 4.2e-06 56.2 225 37.8
Sabra02G0055300 Salix brachista HOM05D001186 ORTHO05D000971 4.2e-06 56.2 83 42.2
Atru.chr11.114 Acer truncatum HOM05D001186 ORTHO05D000971 7.1e-06 55.5 118 44.9
AL2G27310 Arabidopsis lyrata HOM05D001186 ORTHO05D000971 7.1e-06 55.5 113 35.4
arahy.Tifrunner.gnm1.ann1.MZ5XB8 Arachis hypogaea HOM05D001186 ORTHO05D000971 7.1e-06 55.5 95 36.8
Glyma.14G124800 Glycine max HOM05D001186 ORTHO05D000971 7.1e-06 55.5 83 41.0
Lj2g0018313 Lotus japonicus HOM05D001186 ORTHO05D000971 7.1e-06 55.5 239 25.9
Solyc03g119410.1 Solanum lycopersicum HOM05D001186 ORTHO05D000971 7.1e-06 55.5 204 31.4
TWI31G0680 Tripterygium wilfordii HOM05D001186 ORTHO05D000971 7.1e-06 55.5 133 30.8
CARHR061230 Cardamine hirsuta HOM05D001186 ORTHO05D000971 9.3e-06 55.1 103 35.9
DCAR_026737 Daucus carota HOM05D001186 ORTHO05D000971 9.3e-06 55.1 233 27.5
Migut.L01057 Erythranthe guttata HOM05D001186 ORTHO05D000971 9.3e-06 55.1 135 31.9
Hma1.2p1_0061F.1_g033760 Hydrangea macrophylla HOM05D001186 ORTHO05D000971 9.3e-06 55.1 241 30.3
Lj4g0014153 Lotus japonicus HOM05D001186 ORTHO05D000971 9.3e-06 55.1 132 39.4
MD10G1018000 Malus domestica HOM05D001186 ORTHO05D000971 9.3e-06 55.1 86 55.8
Manes.02G176600 Manihot esculenta HOM05D001186 ORTHO05D000971 9.3e-06 55.1 83 41.0


User provided reference genes

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