Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g030680 Pisum sativum HOM05D008500 ORTHO05D005299 6.1e-32 140.2 70 100.0
TPR.G18382 Trifolium pratense HOM05D008500 ORTHO05D005299 7.9e-24 113.2 70 81.4
Medtr6g071040 Medicago truncatula HOM05D008500 ORTHO05D005299 7.4e-22 106.7 66 78.8
Glyma.07G104300 Glycine max HOM05D008500 ORTHO05D005299 6.3e-21 103.6 63 79.4
Glyma.09G173300 Glycine max HOM05D008500 ORTHO05D005299 6.3e-21 103.6 66 77.3
Phvul.004G148400 Phaseolus vulgaris HOM05D008500 ORTHO05D005299 9.1e-20 99.8 66 74.2
VMungo0464G1302 Vigna mungo HOM05D008500 ORTHO05D005299 2.6e-19 98.2 64 76.6
Lalb_Chr14g0370691 Lupinus albus HOM05D008500 ORTHO05D005299 9.4e-17 89.7 67 70.1
Lalb_Chr16g0386911 Lupinus albus HOM05D008500 ORTHO05D005299 8.0e-16 86.7 66 69.7
FAN04G2293 Fragaria x ananassa HOM05D008500 ORTHO05D005299 2.3e-15 85.1 73 61.6
FvH4_5g17640 Fragaria vesca HOM05D008500 ORTHO05D005299 6.7e-15 83.6 72 61.1
FAN08G2086 Fragaria x ananassa HOM05D008500 ORTHO05D005299 6.7e-15 83.6 72 61.1
arahy.Tifrunner.gnm1.ann1.J4XL7B Arachis hypogaea HOM05D008500 ORTHO05D005299 1.5e-14 82.4 71 67.6
FAN13G1653 Fragaria x ananassa HOM05D008500 ORTHO05D005299 1.5e-14 82.4 72 61.1
FAN18G0107 Fragaria x ananassa HOM05D008500 ORTHO05D005299 1.5e-14 82.4 72 61.1
arahy.Tifrunner.gnm1.ann1.B8M078 Arachis hypogaea HOM05D008500 ORTHO05D005299 2.0e-14 82.0 71 66.2
RcHm_v2.0_Chr7g0178031 Rosa chinensis HOM05D008500 ORTHO05D005299 3.3e-14 81.3 72 61.1
Lalb_Chr24g0398121 Lupinus albus HOM05D008500 ORTHO05D005299 5.7e-14 80.5 61 67.2
Lalb_Chr05g0221531 Lupinus albus HOM05D008500 ORTHO05D005299 2.8e-13 78.2 62 62.9
QL10p031374 Quercus lobata HOM05D008500 ORTHO05D005299 3.7e-13 77.8 59 66.1
CiPaw.15G146300 Carya illinoinensis HOM05D008500 ORTHO05D005299 1.4e-12 75.9 55 65.5
PGR044G0774 Punica granatum HOM05D008500 ORTHO05D005299 7.0e-12 73.6 64 56.2
Duzib205G0189 Durio zibethinus HOM05D008500 ORTHO05D005299 9.1e-12 73.2 54 68.5
MELO3C002147.2 Cucumis melo HOM05D008500 ORTHO05D005299 1.6e-11 72.4 54 68.5
Manes.14G157100 Manihot esculenta HOM05D008500 ORTHO05D005299 2.0e-11 72.0 71 50.7
Haze_18904 Corylus avellana HOM05D008500 ORTHO05D005299 2.6e-11 71.6 57 57.9
Haze_18910 Corylus avellana HOM05D008500 ORTHO05D005299 2.6e-11 71.6 57 57.9
Manes.06G003500 Manihot esculenta HOM05D008500 ORTHO05D005299 2.6e-11 71.6 72 55.6
Thecc.03G061000 Theobroma cacao HOM05D008500 ORTHO05D005299 2.6e-11 71.6 65 56.9
Cfa020630 Carpinus fangiana HOM05D008500 ORTHO05D005299 4.5e-11 70.9 57 57.9
ClCG04G010470 Citrullus lanatus HOM05D008500 ORTHO05D005299 4.5e-11 70.9 54 66.7
Gohir.A03G114900 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.0e-10 69.7 68 58.8
Gohir.D02G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.0e-10 69.7 68 58.8
Gorai.005G156500 Gossypium raimondii HOM05D007313 ORTHO05D005299 1.0e-10 69.7 68 58.8
Prupe.5G236200 Prunus persica HOM05D008500 ORTHO05D005299 1.0e-10 69.7 59 61.0
Cpa.g.sc3.366 Carica papaya HOM05D008500 ORTHO05D005299 1.3e-10 69.3 61 59.0
Nn4g24351 Nelumbo nucifera HOM05D008500 ORTHO05D005299 2.2e-10 68.6 65 58.5
Sed0027993 Sechium edule HOM05D008500 ORTHO05D005299 2.2e-10 68.6 54 59.3
CsaV3_1G007310 Cucumis sativus L. HOM05D008500 ORTHO05D005299 2.9e-10 68.2 52 63.5
Duzib248G0390 Durio zibethinus HOM05D007313 ORTHO05D005299 2.9e-10 68.2 69 56.5
MBI19_g22070_MAGBIO Magnolia biondii HOM05D008500 ORTHO05D005299 3.8e-10 67.8 74 58.1
Duzib268G0019 Durio zibethinus HOM05D007313 ORTHO05D005299 5.0e-10 67.4 58 60.3
Potri.012G044001 Populus trichocarpa HOM05D008500 ORTHO05D005299 5.0e-10 67.4 64 60.9
Gorai.008G291300 Gossypium raimondii HOM05D008500 ORTHO05D005299 8.5e-10 66.6 73 60.3
Gohir.D12G270900 Gossypium hirsutum HOM05D008500 ORTHO05D005299 1.1e-09 66.2 71 60.6
Potri.015G034800 Populus trichocarpa HOM05D008500 ORTHO05D005299 1.5e-09 65.9 75 53.3
Sabra15G0028800 Salix brachista HOM05D008500 ORTHO05D005299 1.5e-09 65.9 77 53.2
Gohir.A12G270500 Gossypium hirsutum HOM05D008500 ORTHO05D005299 2.5e-09 65.1 69 60.9
Thecc.02G291900 Theobroma cacao HOM05D007313 ORTHO05D005299 3.2e-09 64.7 63 57.1
COL.COLO4_16580 Corchorus olitorius HOM05D007313 ORTHO05D005299 4.2e-09 64.3 56 58.9
Sabra12G0030900 Salix brachista HOM05D008500 ORTHO05D005299 4.2e-09 64.3 64 56.2
TAR371G1237 Trochodendron aralioides HOM05D008500 ORTHO05D005299 5.5e-09 63.9 66 54.5
Dinv10480 Davidia involucrata HOM05D007313 ORTHO05D005299 7.2e-09 63.5 58 60.3
TAR629G3106 Trochodendron aralioides HOM05D007313 ORTHO05D005299 9.4e-09 63.2 56 64.3
Gohir.A01G147300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.2e-08 62.8 58 58.6
Gohir.D01G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.2e-08 62.8 58 58.6
Gorai.002G172500 Gossypium raimondii HOM05D007313 ORTHO05D005299 1.2e-08 62.8 58 58.6
TAR371G0465 Trochodendron aralioides HOM05D008500 ORTHO05D005299 1.2e-08 62.8 66 54.5
Sed0007445 Sechium edule HOM05D008500 ORTHO05D005299 2.1e-08 62.0 53 62.3
Rhsim09G0090300 Rhododendron simsii HOM05D007313 ORTHO05D005299 4.7e-08 60.8 63 52.4
CSS0045507 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 6.1e-08 60.5 65 52.3
Nn3g18353 Nelumbo nucifera HOM05D008500 ORTHO05D005299 8.0e-08 60.1 54 59.3
AT1G67920 Arabidopsis thaliana HOM05D007313 ORTHO05D005299 1.8e-07 58.9 67 50.7
DCAR_023578 Daucus carota HOM05D007313 ORTHO05D005299 1.8e-07 58.9 72 50.0
AL2G26720 Arabidopsis lyrata HOM05D007313 ORTHO05D005299 4.0e-07 57.8 67 49.3
CARHR060560 Cardamine hirsuta HOM05D007313 ORTHO05D005299 4.0e-07 57.8 67 50.7
Eucgr.K02282 Eucalyptus grandis HOM05D008500 ORTHO05D005299 4.0e-07 57.8 68 51.5
Carub.0002s1441 Capsella rubella HOM05D007313 ORTHO05D005299 5.2e-07 57.4 66 53.0
Lsat_1_v5_gn_8_46180 Lactuca sativa HOM05D007313 ORTHO05D005299 5.2e-07 57.4 67 50.7
SalBow2G1257 Salvia bowleyana HOM05D007313 ORTHO05D005299 5.2e-07 57.4 70 50.0
Migut.E00472 Erythranthe guttata HOM05D007313 ORTHO05D005299 1.2e-06 56.2 69 50.7
CSS0007506 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 1.5e-06 55.8 65 50.8
DCAR_026801 Daucus carota HOM05D007313 ORTHO05D005299 1.5e-06 55.8 74 51.4
Eucgr.H00551 Eucalyptus grandis HOM05D008500 ORTHO05D005299 3.3e-06 54.7 60 50.0
Thhalv10019740m.g Eutrema salsugineum HOM05D007313 ORTHO05D005299 3.3e-06 54.7 52 57.7
Cpa.g.sc2.206 Carica papaya HOM05D007313 ORTHO05D005299 4.4e-06 54.3 66 53.0
Manes.15G133700 Manihot esculenta HOM05D007313 ORTHO05D005299 4.4e-06 54.3 65 47.7
Cfa015015 Carpinus fangiana HOM05D007313 ORTHO05D005299 5.7e-06 53.9 59 52.5
Gohir.D09G169500 Gossypium hirsutum HOM05D037674 ORTHO05D036071 5.7e-06 53.9 55 54.5
Gorai.006G191000 Gossypium raimondii HOM05D037674 ORTHO05D036071 5.7e-06 53.9 55 54.5
Nitab4.5_0010904g0010 Nicotiana tabacum HOM05D013191 ORTHO05D015720 5.7e-06 53.9 61 59.0
A02p14560 Brassica napus HOM05D007313 ORTHO05D005299 7.5e-06 53.5 52 57.7
BraA02t06526Z Brassica rapa HOM05D007313 ORTHO05D005299 7.5e-06 53.5 52 57.7
BcaC08g46017 Brassica carinata HOM05D007313 ORTHO05D005299 9.7e-06 53.1 51 58.8
A07p32280 Brassica napus HOM05D007313 ORTHO05D005299 9.7e-06 53.1 51 58.8
C06p38120 Brassica napus HOM05D007313 ORTHO05D005299 9.7e-06 53.1 51 58.8
BolC6t38909H Brassica oleracea HOM05D007313 ORTHO05D005299 9.7e-06 53.1 51 58.8
BraA07t30853Z Brassica rapa HOM05D007313 ORTHO05D005299 9.7e-06 53.1 51 58.8
Sp5g22920 Schrenkiella parvula HOM05D007313 ORTHO05D005299 9.7e-06 53.1 52 57.7


User provided reference genes

Program Settings