Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g025680 Pisum sativum HOM05D005660 ORTHO05D006954 1.4e-100 369.8 202 100.0
Medtr2g055760 Medicago truncatula HOM05D005660 ORTHO05D006954 4.2e-78 295.0 207 81.2
Lj1g0000047 Lotus japonicus HOM05D005660 ORTHO05D006954 4.7e-77 291.6 204 76.5
Glyma.04G145600 Glycine max HOM05D005660 ORTHO05D006954 1.2e-75 287.0 204 74.5
Glyma.06G209600 Glycine max HOM05D005660 ORTHO05D006954 1.2e-75 287.0 205 75.1
VMungo1309G1625 Vigna mungo HOM05D005660 ORTHO05D006954 1.8e-73 279.6 205 74.1
arahy.Tifrunner.gnm1.ann1.18T8HP Arachis hypogaea HOM05D005660 ORTHO05D006954 1.3e-71 273.5 206 76.2
TPR.G27758 Trifolium pratense HOM05D005660 ORTHO05D006954 1.5e-70 270.0 184 84.2
QL10p023157 Quercus lobata HOM05D005660 ORTHO05D006954 8.3e-66 254.2 206 68.0
Ca_02656_v3 Cicer arietinum L. HOM05D005660 ORTHO05D006954 1.6e-64 250.0 176 78.4
FvH4_5g12810 Fragaria vesca HOM05D005660 ORTHO05D006954 4.6e-64 248.4 210 64.3
FAN08G1036 Fragaria x ananassa HOM05D005660 ORTHO05D006954 1.7e-63 246.5 210 63.8
FAN18G2100 Fragaria x ananassa HOM05D005660 ORTHO05D006954 2.3e-63 246.1 210 63.8
RcHm_v2.0_Chr7g0184421 Rosa chinensis HOM05D005660 ORTHO05D006954 6.6e-63 244.6 210 64.3
FAN18G0270 Fragaria x ananassa HOM05D005660 ORTHO05D006954 1.5e-62 243.4 209 63.2
Lj5C141T17 Lonicera japonica HOM05D005660 ORTHO05D006954 7.3e-62 241.1 202 61.4
Prupe.5G216100 Prunus persica HOM05D005660 ORTHO05D006954 7.3e-62 241.1 213 61.0
Lalb_Chr07g0178541 Lupinus albus HOM05D005660 ORTHO05D006954 1.6e-61 240.0 203 65.0
Peaxi162Scf00015g00624 Petunia axillaris HOM05D005660 ORTHO05D006954 1.6e-61 240.0 203 61.6
CANSAT80G1116 Cannabis sativa HOM05D005660 ORTHO05D006954 2.1e-61 239.6 212 62.3
COL.COLO4_38430 Corchorus olitorius HOM05D005660 ORTHO05D006954 1.4e-60 236.9 205 62.4
MD06G1209900 Malus domestica HOM05D005660 ORTHO05D006954 3.1e-60 235.7 216 58.8
CiPaw.16G083200 Carya illinoinensis HOM05D005660 ORTHO05D006954 6.8e-60 234.6 212 62.3
Glyma.17G122400 Glycine max HOM05D005660 ORTHO05D006954 6.8e-60 234.6 202 65.3
Glyma.05G014100 Glycine max HOM05D005660 ORTHO05D006954 8.9e-60 234.2 202 64.9
Dinv36893 Davidia involucrata HOM05D005660 ORTHO05D006954 2.0e-59 233.0 202 62.4
Ciclev10022237m.g Citrus clementina HOM05D005660 ORTHO05D006954 2.6e-59 232.6 206 62.1
arahy.Tifrunner.gnm1.ann1.IPQJ9D Arachis hypogaea HOM05D005660 ORTHO05D006954 4.4e-59 231.9 207 60.9
Lsat_1_v5_gn_1_15860 Lactuca sativa HOM05D005660 ORTHO05D006954 7.5e-59 231.1 205 58.5
MD14G1220800 Malus domestica HOM05D005660 ORTHO05D006954 9.8e-59 230.7 217 57.6
Sed0025711 Sechium edule HOM05D005660 ORTHO05D006954 1.3e-58 230.3 207 60.4
ECA247G3454 Erigeron canadensis HOM05D005660 ORTHO05D006954 1.7e-58 229.9 205 58.0
Duzib068G0469 Durio zibethinus HOM05D005660 ORTHO05D006954 2.2e-58 229.6 210 61.0
Thecc.03G027100 Theobroma cacao HOM05D005660 ORTHO05D006954 6.4e-58 228.0 205 62.0
Cc04_g07620 Coffea canephora HOM05D005660 ORTHO05D006954 1.4e-57 226.9 202 59.4
Eucgr.B00688 Eucalyptus grandis HOM05D005660 ORTHO05D006954 1.4e-57 226.9 204 58.8
Nitab4.5_0003716g0100 Nicotiana tabacum HOM05D005660 ORTHO05D006954 1.4e-57 226.9 202 57.4
arahy.Tifrunner.gnm1.ann1.YK8N2P Arachis hypogaea HOM05D005660 ORTHO05D006954 3.2e-57 225.7 207 59.4
HanXRQChr02g0042751 Helianthus annuus HOM05D005660 ORTHO05D006954 3.2e-57 225.7 202 57.4
arahy.Tifrunner.gnm1.ann1.K4DBIV Arachis hypogaea HOM05D005660 ORTHO05D006954 5.4e-57 224.9 178 75.3
Atru.chr9.733 Acer truncatum HOM05D005660 ORTHO05D006954 7.1e-57 224.6 204 60.8
CSS0007003 Camellia sinensis var. sinensis HOM05D005660 ORTHO05D006954 1.6e-56 223.4 204 59.8
CsaV3_1G006460 Cucumis sativus L. HOM05D005660 ORTHO05D006954 1.6e-56 223.4 208 57.7
HanXRQChr04g0105941 Helianthus annuus HOM05D005660 ORTHO05D006954 1.6e-56 223.4 203 57.1
Potri.012G059100 Populus trichocarpa HOM05D005660 ORTHO05D006954 1.6e-56 223.4 208 61.1
MELO3C002072.2 Cucumis melo HOM05D005660 ORTHO05D006954 7.8e-56 221.1 209 57.9
Manes.05G117900 Manihot esculenta HOM05D005660 ORTHO05D006954 1.0e-55 220.7 204 59.3
Lj4g0015648 Lotus japonicus HOM05D005660 ORTHO05D006954 1.3e-55 220.3 203 62.1
PGR083G1435 Punica granatum HOM05D005660 ORTHO05D006954 1.3e-55 220.3 213 58.2
PGSC0003DMG400004073 Solanum tuberosum HOM05D005660 ORTHO05D006954 3.9e-55 218.8 204 57.4
CAN.G438.109 Capsicum annuum HOM05D005660 ORTHO05D006954 8.6e-55 217.6 211 54.5
CiPaw.15G125200 Carya illinoinensis HOM05D005660 ORTHO05D006954 8.6e-55 217.6 214 64.5
Actinidia39803 Actinidia chinensis HOM05D005660 ORTHO05D006954 1.9e-54 216.5 204 57.8
TWI81G0064 Tripterygium wilfordii HOM05D005660 ORTHO05D006954 1.9e-54 216.5 207 56.5
Manes.01G021600 Manihot esculenta HOM05D005660 ORTHO05D006954 5.6e-54 214.9 204 57.4
Gohir.A12G265100 Gossypium hirsutum HOM05D005660 ORTHO05D006954 1.6e-53 213.4 208 56.2
Gohir.D12G265300 Gossypium hirsutum HOM05D005660 ORTHO05D006954 3.6e-53 212.2 208 55.8
Solyc03g119840.3 Solanum lycopersicum HOM05D005660 ORTHO05D006954 3.6e-53 212.2 210 53.8
Phvul.003G178300 Phaseolus vulgaris HOM05D005660 ORTHO05D006954 6.2e-53 211.5 219 57.5
Oeu016162.1 Olea europaea HOM05D005660 ORTHO05D006954 8.1e-53 211.1 199 58.3
Sopen06g026530 Solanum pennellii HOM05D005660 ORTHO05D006954 2.6e-51 206.1 202 56.4
Migut.K00381 Erythranthe guttata HOM05D005660 ORTHO05D006954 7.6e-51 204.5 199 54.8
SalBow2G0395 Salvia bowleyana HOM05D005660 ORTHO05D006954 9.9e-51 204.1 200 54.5
Nitab4.5_0010134g0010 Nicotiana tabacum HOM05D005660 ORTHO05D006954 3.7e-50 202.2 201 54.2
AT1G48960 Arabidopsis thaliana HOM05D005660 ORTHO05D006954 1.1e-49 200.7 213 55.9
BcaNung05017 Brassica carinata HOM05D005660 ORTHO05D006954 1.4e-49 200.3 209 54.5
C06p03690 Brassica napus HOM05D005660 ORTHO05D006954 1.4e-49 200.3 209 54.5
BolC6t35508H Brassica oleracea HOM05D005660 ORTHO05D006954 1.9e-49 199.9 209 54.5
Cfa019836 Carpinus fangiana HOM05D005660 ORTHO05D006954 2.4e-49 199.5 173 62.4
Nn3g17686 Nelumbo nucifera HOM05D005660 ORTHO05D006954 2.4e-49 199.5 200 57.0
Nitab4.5_0001432g0090 Nicotiana tabacum HOM05D005660 ORTHO05D006954 4.1e-49 198.7 212 51.9
Hund09993 Selenicereus undatus HOM05D005660 ORTHO05D006954 4.1e-49 198.7 215 54.0
AL1G55790 Arabidopsis lyrata HOM05D005660 ORTHO05D006954 5.4e-49 198.4 213 55.4
A06p04080 Brassica napus HOM05D005660 ORTHO05D006954 1.6e-48 196.8 209 53.1
BcaC08g43100 Brassica carinata HOM05D005660 ORTHO05D006954 2.1e-48 196.4 209 54.1
MSTRG.9561 Avicennia marina HOM05D005660 ORTHO05D006954 3.5e-48 195.7 196 55.6
BraA06t23613Z Brassica rapa HOM05D005660 ORTHO05D006954 3.5e-48 195.7 209 53.1
Sed0025679 Sechium edule HOM05D005660 ORTHO05D006954 4.6e-48 195.3 210 51.4
Gorai.008G285000 Gossypium raimondii HOM05D005660 ORTHO05D006954 6.0e-48 194.9 241 48.1
Sp1g35870 Schrenkiella parvula HOM05D005660 ORTHO05D006954 6.0e-48 194.9 208 54.3
Carub.0001s3813 Capsella rubella HOM05D005660 ORTHO05D006954 1.7e-47 193.4 212 50.5
CARHR038970 Cardamine hirsuta HOM05D005660 ORTHO05D006954 3.9e-47 192.2 212 52.4
Haze_18589 Corylus avellana HOM05D005660 ORTHO05D006954 3.9e-47 192.2 182 58.2
Peaxi162Scf00013g00938 Petunia axillaris HOM05D005660 ORTHO05D006954 6.6e-47 191.4 200 53.0
Haze_18590 Corylus avellana HOM05D005660 ORTHO05D006954 8.6e-47 191.0 182 57.7
BcaC07g37091 Brassica carinata HOM05D005660 ORTHO05D006954 1.9e-46 189.9 208 55.3
C08p04550 Brassica napus HOM05D005660 ORTHO05D006954 1.9e-46 189.9 208 55.3
BolC8t47259H Brassica oleracea HOM05D005660 ORTHO05D006954 1.9e-46 189.9 208 55.3
A08p04280 Brassica napus HOM05D005660 ORTHO05D006954 2.5e-46 189.5 209 55.0
BcaB04g17376 Brassica carinata HOM05D005660 ORTHO05D006954 3.3e-46 189.1 208 51.0
PSO063G2916 Papaver somniferum HOM05D005660 ORTHO05D006954 4.3e-46 188.7 204 52.5
Thhalv10011768m.g Eutrema salsugineum HOM05D005660 ORTHO05D006954 7.3e-46 188.0 211 52.6
VMungo1215G2351 Vigna mungo HOM05D005660 ORTHO05D006954 1.2e-45 187.2 287 45.3
Nitab4.5_0000410g0170 Nicotiana tabacum HOM05D005660 ORTHO05D006954 1.6e-45 186.8 172 57.0
Ah.11g047200 Amaranthus hybridus HOM05D005660 ORTHO05D006954 2.1e-45 186.4 219 49.3
EL10Ac5g11240 Beta vulgaris HOM05D005660 ORTHO05D006954 3.6e-45 185.7 209 48.8
Aqoxy3G03878 Aquilegia oxysepala HOM05D005660 ORTHO05D006954 6.2e-45 184.9 202 52.0
Cpa.g.c34045 Carica papaya HOM05D005660 ORTHO05D006954 6.2e-45 184.9 174 59.8
Aa31LG10G4970 Aethionema arabicum HOM05D005660 ORTHO05D006954 4.0e-44 182.2 200 53.5
PSO782G0127 Papaver somniferum HOM05D005660 ORTHO05D006954 6.8e-44 181.4 204 51.0
Actinidia31034 Actinidia chinensis HOM05D005660 ORTHO05D009563 8.9e-44 181.0 171 57.9
TAR629G1816 Trochodendron aralioides HOM05D005660 ORTHO05D006954 1.3e-42 177.2 194 52.6
Oeu027136.1 Olea europaea HOM05D005660 ORTHO05D006954 2.9e-42 176.0 173 56.1
THA.LOC104820410 Tarenaya hassleriana HOM05D005660 ORTHO05D006954 4.2e-41 172.2 232 47.8
Sc12g0006810 Simmondsia chinensis HOM05D005660 ORTHO05D006954 9.3e-41 171.0 190 50.5
BraA08t32455Z Brassica rapa HOM05D005660 ORTHO05D006954 1.2e-40 170.6 209 48.3
Phvul.009G201000 Phaseolus vulgaris HOM05D005660 ORTHO05D006954 1.6e-40 170.2 126 74.6
DCAR_011337 Daucus carota HOM05D005660 ORTHO05D006954 2.7e-40 169.5 168 53.0
Duzib084G1344 Durio zibethinus HOM05D005660 ORTHO05D006954 4.6e-40 168.7 201 48.3
TAR622G0544 Trochodendron aralioides HOM05D005660 ORTHO05D006954 2.5e-38 162.9 202 49.0
vmacro17684 Vaccinium macrocarpon HOM05D005660 ORTHO05D006954 9.6e-38 161.0 170 52.4
GSVIVG01008223001 Vitis vinifera HOM05D005660 ORTHO05D006954 1.1e-36 157.5 202 47.5
AUR62032180 Chenopodium quinoa HOM05D005660 ORTHO05D006954 1.5e-35 153.7 184 48.9
CAN.G587.76 Capsicum annuum HOM05D005660 ORTHO05D006954 3.4e-35 152.5 120 64.2
ClCG04G011310 Citrullus lanatus HOM05D005660 ORTHO05D006954 9.9e-35 151.0 129 63.6
Sabra12G0040900 Salix brachista HOM05D005660 ORTHO05D006954 1.7e-34 150.2 120 68.3
MBI16_g23748_MAGBIO Magnolia biondii HOM05D005660 ORTHO05D006954 3.8e-34 149.1 182 48.9
Lalb_Chr13g0302411 Lupinus albus HOM05D005660 ORTHO05D006954 8.4e-34 147.9 120 65.0
Rhsim08G0138400 Rhododendron simsii HOM05D005660 ORTHO05D006954 2.7e-32 142.9 126 57.9
Cpa.g.sc13.65 Carica papaya HOM05D005660 ORTHO05D006954 1.1e-30 137.5 120 60.8
Nn4g23692 Nelumbo nucifera HOM05D005660 ORTHO05D006954 2.5e-30 136.3 196 43.4
ATR0598G023 Amborella trichopoda HOM05D005660 ORTHO05D006954 2.1e-29 133.3 154 50.0
AUR62036940 Chenopodium quinoa HOM05D005660 ORTHO05D006954 6.9e-28 128.3 121 56.2
HPP92_011590 Vanilla planifolia HOM05D005660 ORTHO05D006954 2.6e-27 126.3 140 50.0
SEGI_40774 Sequoiadendron giganteum HOM05D005660 ORTHO05D006954 9.9e-27 124.4 149 49.7
Zm00001eb126330 Zea mays HOM05D005660 ORTHO05D006954 5.6e-22 108.6 119 51.3
Sopen03g038700 Solanum pennellii HOM05D005660 ORTHO05D006954 7.4e-22 108.2 105 54.3
AagrBONN_evm.TU.Sc2ySwM_362.1267 Anthoceros agrestis HOM05D005660 ORTHO05D006954 1.1e-20 104.4 165 39.4
FAN13G2173 Fragaria x ananassa HOM05D005660 ORTHO05D006954 7.6e-19 98.2 98 61.2
Lalb_Chr13g0302401 Lupinus albus HOM05D005660 ORTHO05D006954 4.6e-16 89.0 86 57.0
CDE07G0562 Ceratophyllum demersum HOM05D005660 ORTHO05D006954 7.9e-16 88.2 146 39.0
PGSC0003DMG400005618 Solanum tuberosum HOM05D005660 ORTHO05D006954 6.5e-10 68.6 76 50.0
TPR.G38561 Trifolium pratense HOM05D001012 ORTHO05D002597 1.9e-09 67.0 149 29.5
Ca_05056_v3 Cicer arietinum L. HOM05D001012 ORTHO05D002597 3.2e-09 66.2 150 28.7
RcHm_v2.0_Chr5g0042351 Rosa chinensis HOM05D005660 ORTHO05D006954 3.2e-09 66.2 71 52.1
Sabra12G0040800 Salix brachista HOM05D005660 ORTHO05D006954 3.2e-09 66.2 94 41.5
Medtr5g047050 Medicago truncatula HOM05D001012 ORTHO05D002597 5.5e-09 65.5 149 28.9
Lj2g0027117 Lotus japonicus HOM05D001012 ORTHO05D002597 7.1e-09 65.1 149 28.9
Psat2g093600 Pisum sativum HOM05D001012 ORTHO05D002597 1.2e-08 64.3 149 28.2
RcHm_v2.0_Chr4g0434591 Rosa chinensis HOM05D005660 ORTHO05D006954 1.2e-08 64.3 40 75.0
Mapoly0056s0094 Marchantia polymorpha HOM05D001012 ORTHO05D004721 3.5e-08 62.8 153 29.4
Solyc06g069270.1 Solanum lycopersicum HOM05D005660 ORTHO05D006954 4.6e-08 62.4 40 72.5
SMO145G0122 Selaginella moellendorffii HOM05D001012 ORTHO05D002597 6.1e-08 62.0 125 32.8
Glyma.02G121800 Glycine max HOM05D001012 ORTHO05D002597 1.3e-07 60.8 121 29.8
TWI31G0760 Tripterygium wilfordii HOM05D001012 ORTHO05D002597 3.0e-07 59.7 126 31.0
Phvul.003G038900 Phaseolus vulgaris HOM05D001012 ORTHO05D002597 3.9e-07 59.3 121 32.2
Lalb_Chr17g0341401 Lupinus albus HOM05D001012 ORTHO05D002597 6.7e-07 58.5 121 28.1
Actinidia13401 Actinidia chinensis HOM05D001012 ORTHO05D002597 8.7e-07 58.2 149 26.8
VMungo1215G3431 Vigna mungo HOM05D001012 ORTHO05D002597 8.7e-07 58.2 121 31.4
arahy.Tifrunner.gnm1.ann1.QD4C18 Arachis hypogaea HOM05D001012 ORTHO05D002597 1.1e-06 57.8 141 30.5
arahy.Tifrunner.gnm1.ann1.WE17ZA Arachis hypogaea HOM05D001012 ORTHO05D002597 1.1e-06 57.8 141 30.5
SEGI_33553 Sequoiadendron giganteum HOM05D001012 ORTHO05D004721 1.1e-06 57.8 127 32.3
TWI81G0138 Tripterygium wilfordii HOM05D001012 ORTHO05D002597 1.1e-06 57.8 121 30.6
SMO139G0062 Selaginella moellendorffii HOM05D001012 ORTHO05D004721 1.5e-06 57.4 143 30.1
Lalb_Chr10g0099111 Lupinus albus HOM05D001012 ORTHO05D002597 1.9e-06 57.0 123 28.5
Manes.01G025500 Manihot esculenta HOM05D001012 ORTHO05D002597 1.9e-06 57.0 149 26.8
Actinidia10447 Actinidia chinensis HOM05D001012 ORTHO05D002597 2.5e-06 56.6 135 31.1
SEGI_09085 Sequoiadendron giganteum HOM05D001012 ORTHO05D004721 3.3e-06 56.2 117 32.5
CDE10G0510 Ceratophyllum demersum HOM05D001012 ORTHO05D002597 4.3e-06 55.8 156 24.4
Haze_11874 Corylus avellana HOM05D001012 ORTHO05D002597 4.3e-06 55.8 122 31.1
ECA246G1989 Erigeron canadensis HOM05D001012 ORTHO05D002597 5.7e-06 55.5 121 27.3
Phvul.003G182600 Phaseolus vulgaris HOM05D001012 ORTHO05D002597 5.7e-06 55.5 116 28.4
Cfa008854 Carpinus fangiana HOM05D001012 ORTHO05D002597 7.4e-06 55.1 122 30.3
PSO063G0991 Papaver somniferum HOM05D001012 ORTHO05D002597 7.4e-06 55.1 121 25.6


User provided reference genes

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