Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g024120 Pisum sativum HOM05D004244 ORTHO05D004964 6.8e-81 304.3 195 100.0
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 2.8e-66 255.8 196 73.0
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 4.6e-61 238.4 195 67.7
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 5.9e-61 238.0 195 68.2
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 5.4e-54 214.9 194 59.3
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 1.1e-51 207.2 196 58.2
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 2.9e-47 192.6 193 56.5
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 4.6e-45 185.3 196 54.6
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 3.3e-43 179.1 195 48.7
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 7.3e-43 177.9 200 62.5
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 7.3e-43 177.9 191 51.8
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 6.2e-42 174.9 196 55.6
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 8.1e-42 174.5 194 52.1
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 1.4e-41 173.7 194 52.1
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 3.1e-41 172.6 176 56.2
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 7.6e-40 167.9 192 50.0
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 1.7e-39 166.8 190 50.5
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 2.9e-39 166.0 194 49.0
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 5.4e-38 161.8 196 50.0
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 1.2e-37 160.6 175 50.9
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 2.7e-37 159.5 196 49.5
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 5.1e-36 155.2 196 48.5
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 4.7e-34 148.7 193 56.5
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 4.7e-34 148.7 194 42.8
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 1.8e-33 146.7 200 44.5
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 1.8e-33 146.7 191 42.9
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 5.2e-33 145.2 191 48.7
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 6.9e-33 144.8 202 43.6
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 9.0e-33 144.4 196 50.5
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 1.2e-32 144.1 209 46.4
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 5.8e-32 141.7 187 49.7
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 7.6e-32 141.4 205 44.9
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 2.9e-31 139.4 188 62.8
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 3.8e-31 139.0 211 43.6
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 1.1e-30 137.5 193 42.0
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 1.1e-30 137.5 201 39.3
Cpa.g.sc59.37 Carica papaya HOM05D004244 ORTHO05D004964 3.2e-30 136.0 199 42.7
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 3.2e-30 136.0 198 42.4
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 1.6e-29 133.7 192 42.2
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 6.0e-29 131.7 202 41.6
Potri.010G063300 Populus trichocarpa HOM05D004244 ORTHO05D004964 6.0e-29 131.7 188 40.4
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 1.0e-28 131.0 197 40.1
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 2.3e-28 129.8 205 39.0
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.1e-27 127.5 194 40.7
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.9e-27 126.7 194 40.2
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 2.5e-27 126.3 194 40.7
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 5.6e-27 125.2 208 43.8
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 5.6e-27 125.2 189 39.2
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 1.6e-26 123.6 202 39.6
Atru.chr4.1873 Acer truncatum HOM05D004244 ORTHO05D004964 2.8e-26 122.9 183 49.2
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.8e-25 120.2 198 34.3
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.8e-25 120.2 198 36.4
Sopen09g033990 Solanum pennellii HOM05D004244 ORTHO05D004964 3.1e-25 119.4 197 38.1
Solyc09g091010.3 Solanum lycopersicum HOM05D004244 ORTHO05D004964 5.3e-25 118.6 197 38.1
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 1.5e-24 117.1 202 40.6
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 2.0e-24 116.7 184 39.7
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 2.0e-24 116.7 181 38.1
PGSC0003DMG402001493 Solanum tuberosum HOM05D004244 ORTHO05D004964 4.5e-24 115.5 191 37.2
Nitab4.5_0000451g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 5.8e-24 115.2 182 38.5
Nitab4.5_0000867g0080 Nicotiana tabacum HOM05D004244 ORTHO05D004964 5.8e-24 115.2 181 37.0
PGR004G0368 Punica granatum HOM05D004244 ORTHO05D004964 7.6e-24 114.8 190 46.8
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 2.9e-23 112.8 189 36.0
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 4.9e-23 112.1 195 35.9
Sabra19G0033400 Salix brachista HOM05D004244 ORTHO05D004964 4.9e-23 112.1 178 37.6
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 6.4e-23 111.7 195 35.4
Sabra10G0043500 Salix brachista HOM05D004244 ORTHO05D004964 6.4e-23 111.7 176 37.5
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 8.4e-23 111.3 194 42.8
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 8.4e-23 111.3 201 38.8
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 8.4e-23 111.3 201 38.8
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 1.9e-22 110.2 188 37.8
EL10Ac3g06716 Beta vulgaris HOM05D004244 ORTHO05D004964 3.2e-22 109.4 207 42.5
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 3.2e-22 109.4 201 34.8
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 4.2e-22 109.0 191 35.6
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 5.4e-22 108.6 195 35.9
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 5.4e-22 108.6 204 49.5
Cc09_g03010 Coffea canephora HOM05D004244 ORTHO05D004964 7.1e-22 108.2 179 46.4
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 7.1e-22 108.2 190 35.8
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 7.1e-22 108.2 190 35.8
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 2.1e-21 106.7 188 34.0
Sc19g0005660 Simmondsia chinensis HOM05D004244 ORTHO05D004964 2.1e-21 106.7 210 35.7
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 2.7e-21 106.3 203 34.5
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 7.9e-21 104.8 192 35.9
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 1.0e-20 104.4 204 34.8
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 1.0e-20 104.4 179 36.3
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 5.6e-19 98.6 206 34.0
Migut.F02055 Erythranthe guttata HOM05D004244 ORTHO05D004964 5.6e-19 98.6 200 45.0
Migut.N00322 Erythranthe guttata HOM05D004244 ORTHO05D004964 5.6e-19 98.6 200 42.5
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 7.4e-19 98.2 181 34.3
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 7.4e-19 98.2 174 35.6
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 9.6e-19 97.8 178 35.4
Medtr4g088590 Medicago truncatula HOM05D004244 ORTHO05D004964 3.7e-18 95.9 112 51.8
SalBow1G0411 Salvia bowleyana HOM05D004244 ORTHO05D004964 3.7e-18 95.9 181 41.4
MSTRG.9217 Avicennia marina HOM05D004244 ORTHO05D004964 4.8e-18 95.5 178 47.2
Ciclev10005346m.g Citrus clementina HOM05D004244 ORTHO05D004964 8.1e-18 94.7 219 31.5
HPP92_025817 Vanilla planifolia HOM05D004244 ORTHO05D004964 1.4e-17 94.0 189 36.5
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 5.3e-17 92.0 186 30.6
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 6.9e-17 91.7 199 37.7
Aa31LG5G4140 Aethionema arabicum HOM05D004244 ORTHO05D004964 1.5e-16 90.5 189 33.3
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 2.6e-16 89.7 179 32.4
Duzib266G0003 Durio zibethinus HOM05D004244 ORTHO05D004964 3.4e-16 89.4 66 60.6
SGA_v2.0_scaffold398G50771 Striga asiatica HOM05D004244 ORTHO05D004964 4.5e-16 89.0 179 35.2
CSS0047223 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 5.8e-16 88.6 153 40.5
CSS0047414 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 5.8e-16 88.6 153 40.5
Thhalv10017015m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 7.6e-16 88.2 185 34.6
Duzib151G0660 Durio zibethinus HOM05D004244 ORTHO05D004964 9.9e-16 87.8 142 50.0
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 1.3e-15 87.4 180 33.9
Oeu008815.1 Olea europaea HOM05D004244 ORTHO05D004964 2.2e-15 86.7 153 38.6
Peaxi162Scf00077g00117 Petunia axillaris HOM05D004244 ORTHO05D004964 2.2e-15 86.7 181 32.6
Sp4g15550 Schrenkiella parvula HOM05D004244 ORTHO05D004964 2.2e-15 86.7 195 34.4
Hund07175 Selenicereus undatus HOM05D004244 ORTHO05D004964 4.9e-15 85.5 207 32.9
BcaC02g07847 Brassica carinata HOM05D004244 ORTHO05D004964 2.4e-14 83.2 202 34.2
Actinidia39939 Actinidia chinensis HOM05D004244 ORTHO05D004964 3.2e-14 82.8 129 57.4
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 4.2e-14 82.4 188 32.4
CARHR127250 Cardamine hirsuta HOM05D004244 ORTHO05D004964 4.2e-14 82.4 180 32.8
AT2G33250 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 7.1e-14 81.6 190 33.7
ECA238G3737 Erigeron canadensis HOM05D004244 ORTHO05D004964 1.2e-13 80.9 149 45.0
Lj2C46G4 Lonicera japonica HOM05D004244 ORTHO05D004964 1.2e-13 80.9 171 35.1
BcaC02g07850 Brassica carinata HOM05D004244 ORTHO05D004964 1.6e-13 80.5 178 34.8
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 2.7e-13 79.7 177 32.2
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 3.5e-13 79.3 181 31.5
CAN.G4.41 Capsicum annuum HOM05D004244 ORTHO05D004964 6.0e-13 78.6 175 31.4
vmacro10383 Vaccinium macrocarpon HOM05D004244 ORTHO05D004964 6.0e-13 78.6 87 46.0
DCAR_030773 Daucus carota HOM05D004244 ORTHO05D004964 7.9e-13 78.2 145 51.0
Sed0027895 Sechium edule HOM05D004244 ORTHO05D004964 1.0e-12 77.8 159 39.0
Carub.0004s1471 Capsella rubella HOM05D004244 ORTHO05D004964 1.8e-12 77.0 187 32.6
PGSC0003DMG402028717 Solanum tuberosum HOM05D004244 ORTHO05D004964 1.8e-12 77.0 167 31.1
Sc09g0001820 Simmondsia chinensis HOM05D004244 ORTHO05D004964 3.9e-12 75.9 194 29.9
BcaB04g19340 Brassica carinata HOM05D004244 ORTHO05D004964 5.1e-12 75.5 176 33.5
COL.COLO4_15535 Corchorus olitorius HOM05D004244 ORTHO05D004964 5.1e-12 75.5 143 31.5
AUR62006986 Chenopodium quinoa HOM05D004244 ORTHO05D004964 8.7e-12 74.7 166 42.2
THA.LOC104826102 Tarenaya hassleriana HOM05D004244 ORTHO05D004964 1.1e-11 74.3 182 35.7
BraA03t12533Z Brassica rapa HOM05D004244 ORTHO05D004964 1.9e-11 73.6 184 33.2
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 2.5e-11 73.2 189 30.2
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 3.3e-11 72.8 189 33.9
Aa31LG5G14830 Aethionema arabicum HOM05D004244 ORTHO05D004964 5.6e-11 72.0 187 32.6
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 5.6e-11 72.0 198 34.3
AL4G28880 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 7.4e-11 71.6 184 32.1
C03p40780 Brassica napus HOM05D004244 ORTHO05D004964 7.4e-11 71.6 185 31.9
BolC3t16346H Brassica oleracea HOM05D004244 ORTHO05D004964 7.4e-11 71.6 185 31.9
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 9.6e-11 71.2 175 33.1
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 1.3e-10 70.9 182 30.2
A03p33580 Brassica napus HOM05D004244 ORTHO05D004964 1.6e-10 70.5 183 32.8
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 1.6e-10 70.5 181 34.3
BcaC01g04379 Brassica carinata HOM05D004244 ORTHO05D004964 2.1e-10 70.1 177 32.2
AUR62000633 Chenopodium quinoa HOM05D004244 ORTHO05D004964 6.2e-10 68.6 181 30.4
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 8.2e-10 68.2 182 30.8
Solyc04g050270.1 Solanum lycopersicum HOM05D004244 ORTHO05D004964 5.3e-09 65.5 162 30.2
SGA_v2.0_scaffold329G48831 Striga asiatica HOM05D004244 ORTHO05D004964 5.3e-09 65.5 202 30.7
A04p25560 Brassica napus HOM05D004244 ORTHO05D004964 1.2e-08 64.3 181 34.3
Hund24865 Selenicereus undatus HOM05D004244 ORTHO05D004964 2.0e-08 63.5 142 31.7
Os01g0680600 Oryza sativa ssp. japonica HOM05D004244 ORTHO05D004964 1.3e-07 60.8 213 36.6
Zm00001eb156930 Zea mays HOM05D004244 ORTHO05D004964 2.2e-07 60.1 56 50.0
unitig_26.g9547 Utricularia gibba HOM05D004244 ORTHO05D004964 6.5e-07 58.5 189 29.1
Ah.06g187950 Amaranthus hybridus HOM05D004244 ORTHO05D004964 1.1e-06 57.8 129 29.5


User provided reference genes

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