Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 8.6e-168 593.6 300 100.0
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 5.6e-151 537.7 300 90.0
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 9.6e-143 510.4 301 86.4
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 5.8e-140 501.1 299 84.3
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 1.3e-136 490.0 302 80.5
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 2.1e-134 482.6 293 80.5
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 3.6e-134 481.9 298 78.9
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 2.0e-132 476.1 295 80.0
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 2.0e-132 476.1 277 84.1
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 9.9e-132 473.8 295 78.0
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 1.1e-130 470.3 297 77.1
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 3.9e-128 461.8 297 75.8
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 1.3e-120 436.8 295 73.2
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 6.7e-120 434.5 296 71.6
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 1.3e-118 430.3 298 71.1
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 3.7e-118 428.7 288 71.9
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 1.1e-117 427.2 291 71.1
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 2.4e-117 426.0 290 71.7
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 5.3e-117 424.9 288 70.8
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 6.9e-117 424.5 289 70.2
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 6.9e-117 424.5 293 71.3
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 6.9e-117 424.5 293 72.4
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 1.2e-116 423.7 296 68.6
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 2.0e-116 422.9 280 73.6
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 2.6e-116 422.5 280 71.4
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 3.4e-116 422.2 295 70.2
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 5.8e-116 421.4 301 70.4
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 5.8e-116 421.4 292 70.9
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 2.2e-115 419.5 291 70.1
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.9e-115 419.1 295 72.5
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 3.8e-115 418.7 278 74.1
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 4.9e-115 418.3 278 73.7
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 8.4e-115 417.5 278 73.7
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.1e-114 417.2 295 72.2
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 1.4e-114 416.8 252 79.0
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 1.4e-114 416.8 280 72.9
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 1.4e-114 416.8 293 68.6
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 2.5e-114 416.0 284 71.5
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 4.2e-114 415.2 296 69.3
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 2.1e-113 412.9 293 69.3
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 6.0e-113 411.4 291 68.7
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 1.3e-112 410.2 293 67.6
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.8e-112 409.8 299 68.9
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 3.0e-112 409.1 293 70.3
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 5.1e-112 408.3 273 73.3
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 5.1e-112 408.3 296 67.9
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 8.7e-112 407.5 297 67.3
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 1.1e-111 407.1 291 66.7
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 1.5e-111 406.8 288 69.1
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 2.5e-111 406.0 291 66.7
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 3.3e-111 405.6 295 66.8
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 4.3e-111 405.2 296 66.6
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 4.3e-111 405.2 296 66.6
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 5.7e-111 404.8 278 69.4
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 7.4e-111 404.4 295 66.1
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 3.7e-110 402.1 292 67.1
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 3.7e-110 402.1 265 71.7
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 3.7e-110 402.1 298 65.8
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 3.7e-110 402.1 300 67.0
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 1.8e-109 399.8 294 67.0
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 1.8e-109 399.8 295 66.8
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 2.4e-109 399.4 292 66.1
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 2.4e-109 399.4 290 66.2
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 4.1e-109 398.7 298 65.1
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 6.9e-109 397.9 294 66.7
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 9.0e-109 397.5 282 67.7
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 5.9e-108 394.8 291 68.0
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 2.2e-107 392.9 294 64.6
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 2.9e-107 392.5 300 66.0
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 1.4e-106 390.2 250 72.4
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 1.9e-106 389.8 300 65.3
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 3.5e-105 385.6 298 65.8
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 1.3e-104 383.6 288 68.4
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 2.3e-104 382.9 254 74.8
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 3.0e-104 382.5 231 78.4
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 1.5e-103 380.2 224 79.0
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 3.3e-103 379.0 251 71.3
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 2.8e-102 375.9 290 64.1
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 1.1e-101 374.0 251 70.1
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 2.0e-100 369.8 293 64.2
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 8.5e-99 364.4 299 64.5
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 4.6e-97 358.6 252 66.7
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 1.0e-96 357.5 294 58.8
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.8e-96 356.7 221 77.8
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 1.8e-96 356.7 380 48.7
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 2.0e-95 353.2 209 80.4
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 1.3e-94 350.5 228 75.9
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 2.8e-94 349.4 298 58.7
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 3.7e-94 349.0 297 59.9
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 2.6e-92 342.8 288 60.4
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 3.8e-91 339.0 268 60.4
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 3.2e-90 335.9 268 60.8
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 3.9e-88 328.9 292 58.2
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 5.1e-88 328.6 230 67.0
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 1.5e-87 327.0 223 67.7
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 4.4e-87 325.5 295 53.6
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 6.3e-86 321.6 249 59.0
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 7.0e-85 318.2 292 55.8
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 3.5e-84 315.8 292 55.5
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 3.5e-84 315.8 279 55.2
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 3.8e-83 312.4 289 54.3
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 3.8e-83 312.4 289 54.3
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 3.8e-83 312.4 289 54.3
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 1.9e-82 310.1 257 59.9
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 5.5e-82 308.5 291 53.6
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 9.4e-82 307.8 291 53.6
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 2.1e-81 306.6 278 54.0
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 6.1e-81 305.1 268 56.7
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 1.8e-80 303.5 290 52.8
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 2.3e-80 303.1 219 66.7
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 2.0e-79 300.1 269 55.0
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 2.6e-79 299.7 215 68.8
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 4.1e-77 292.4 265 55.8
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 2.0e-76 290.0 227 58.1
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 9.4e-74 281.2 257 57.2
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 1.8e-72 276.9 230 59.1
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 4.0e-72 275.8 231 58.9
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 1.4e-69 267.3 226 58.0
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 4.9e-62 242.3 276 48.9
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 1.8e-61 240.4 194 57.7
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 4.3e-58 229.2 240 48.3
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 1.2e-55 221.1 143 71.3
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 2.9e-54 216.5 225 47.1
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 2.1e-49 200.3 191 58.1
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 6.6e-43 178.7 164 56.1
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 2.0e-39 167.2 252 37.3
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 6.6e-35 152.1 97 78.4
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 2.9e-30 136.7 113 53.1
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 2.7e-28 130.2 207 35.3
Ca_24194_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 6.0e-28 129.0 109 68.8
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 3.5e-20 103.2 159 37.7
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 2.3e-19 100.5 142 36.6
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 4.3e-18 96.3 75 60.0
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 2.0e-15 87.4 48 85.4
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 1.7e-14 84.3 60 61.7
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 4.6e-12 76.3 94 44.7
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 8.7e-11 72.0 41 75.6
FvH4_1g02060 Fragaria vesca HOM05D005541 ORTHO05D006875 2.1e-09 67.4 40 70.0


User provided reference genes

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