Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g020640 Pisum sativum HOM05D007639 ORTHO05D009509 1.3e-131 474.9 748 100.0
TPR.G34687 Trifolium pratense HOM05D007639 ORTHO05D009509 8.9e-101 372.5 752 92.7
Medtr2g049740 Medicago truncatula HOM05D007639 ORTHO05D009509 2.0e-100 371.3 749 90.7
Ca_02594_v3 Cicer arietinum L. HOM05D007639 ORTHO05D009509 2.7e-97 360.9 748 90.9
Lj6g0022088 Lotus japonicus HOM05D007639 ORTHO05D009509 3.3e-71 274.2 752 85.8
Glyma.09G089200 Glycine max HOM05D007639 ORTHO05D009509 7.4e-63 246.5 742 84.4
VMungo1309G2587 Vigna mungo HOM05D007639 ORTHO05D009509 4.6e-57 227.3 196 61.7
Phvul.009G213300 Phaseolus vulgaris HOM05D007639 ORTHO05D009509 3.9e-56 224.2 196 60.2
Lalb_Chr23g0275911 Lupinus albus HOM05D007639 ORTHO05D009509 5.3e-53 213.8 361 69.8
Haze_17619 Corylus avellana HOM05D007639 ORTHO05D009509 3.7e-46 191.0 184 53.8
Manes.05G164100 Manihot esculenta HOM05D007639 ORTHO05D009509 8.2e-46 189.9 173 56.6
Cfa018449 Carpinus fangiana HOM05D007639 ORTHO05D009509 1.1e-45 189.5 184 53.3
RcHm_v2.0_Chr6g0300361 Rosa chinensis HOM05D007639 ORTHO05D009509 1.4e-45 189.1 347 69.7
FvH4_2g40380 Fragaria vesca HOM05D007639 ORTHO05D009509 4.1e-45 187.6 351 65.5
Dinv39377 Davidia involucrata HOM05D007639 ORTHO05D009509 5.3e-45 187.2 182 52.2
PGR031G3090 Punica granatum HOM05D007639 ORTHO05D009509 6.9e-45 186.8 182 52.7
TWI60G0667 Tripterygium wilfordii HOM05D007639 ORTHO05D009509 9.0e-45 186.4 199 52.8
Prupe.1G585600 Prunus persica HOM05D007639 ORTHO05D009509 2.6e-44 184.9 184 53.3
CsaV3_3G044860 Cucumis sativus L. HOM05D007639 ORTHO05D009509 1.7e-43 182.2 181 54.1
Duzib093G1018 Durio zibethinus HOM05D007639 ORTHO05D009509 2.2e-43 181.8 195 50.8
Gohir.D05G200100 Gossypium hirsutum HOM05D007639 ORTHO05D009509 1.1e-42 179.5 202 50.0
Gorai.009G205400 Gossypium raimondii HOM05D007639 ORTHO05D009509 2.5e-42 178.3 202 49.5
Potri.014G040200 Populus trichocarpa HOM05D007639 ORTHO05D009509 2.5e-42 178.3 186 52.2
ClCG05G019220 Citrullus lanatus HOM05D007639 ORTHO05D009509 4.2e-42 177.6 182 52.7
MELO3C003888.2 Cucumis melo HOM05D007639 ORTHO05D009509 4.2e-42 177.6 181 53.0
Ciclev10003562m.g Citrus clementina HOM05D007639 ORTHO05D009509 7.2e-42 176.8 183 49.7
Sed0007352 Sechium edule HOM05D007639 ORTHO05D009509 9.4e-42 176.4 182 51.6
MD15G1444300 Malus domestica HOM05D007639 ORTHO05D009509 1.6e-41 175.6 182 51.1
Cpa.g.sc207.2 Carica papaya HOM05D007639 ORTHO05D009509 6.1e-41 173.7 180 51.7
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 7.9e-41 173.3 170 52.9
CSS0043455 Camellia sinensis var. sinensis HOM05D007639 ORTHO05D009509 1.4e-40 172.6 188 47.9
CiPaw.15G071600 Carya illinoinensis HOM05D007639 ORTHO05D009509 3.0e-40 171.4 182 51.6
CSS0026781 Camellia sinensis var. sinensis HOM05D007639 ORTHO05D009509 3.9e-40 171.0 188 47.3
Eucgr.A00484 Eucalyptus grandis HOM05D007639 ORTHO05D009509 8.8e-40 169.9 185 48.6
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 4.3e-39 167.5 183 48.6
QL09p028535 Quercus lobata HOM05D007639 ORTHO05D009509 5.7e-39 167.2 192 50.0
Atru.BG.247.p Acer truncatum HOM05D007639 ORTHO05D009509 7.4e-39 166.8 159 50.9
AUR62022372 Chenopodium quinoa HOM05D007639 ORTHO05D009509 8.2e-38 163.3 187 47.1
MBI16_g10987_MAGBIO Magnolia biondii HOM05D007639 ORTHO05D009509 1.4e-37 162.5 182 45.6
Sabra14G0029300 Salix brachista HOM05D007639 ORTHO05D009509 1.8e-37 162.2 186 49.5
AUR62034326 Chenopodium quinoa HOM05D007639 ORTHO05D009509 3.1e-37 161.4 187 46.5
GSVIVG01009638001 Vitis vinifera HOM05D007639 ORTHO05D009509 3.1e-37 161.4 160 50.6
Nn4g24966 Nelumbo nucifera HOM05D007639 ORTHO05D009509 5.3e-37 160.6 181 46.4
DCAR_008778 Daucus carota HOM05D007639 ORTHO05D009509 6.9e-37 160.2 183 46.4
THA.LOC104813851 Tarenaya hassleriana HOM05D007639 ORTHO05D009509 2.6e-36 158.3 191 45.0
vmacro04826 Vaccinium macrocarpon HOM05D007639 ORTHO05D009509 5.9e-36 157.1 183 46.4
vmacro04988 Vaccinium macrocarpon HOM05D007639 ORTHO05D009509 5.9e-36 157.1 183 46.4
TAR625G1528 Trochodendron aralioides HOM05D007639 ORTHO05D009509 7.7e-36 156.8 182 45.6
Psat3g180320 Pisum sativum HOM05D007639 ORTHO05D009509 2.9e-35 154.8 85 94.1
HanXRQChr17g0557061 Helianthus annuus HOM05D007639 ORTHO05D009509 5.0e-35 154.1 159 51.6
CARHR019880 Cardamine hirsuta HOM05D007639 ORTHO05D009509 8.5e-35 153.3 161 48.4
Carub.0001s1888 Capsella rubella HOM05D007639 ORTHO05D009509 1.4e-34 152.5 161 47.8
BraA08t34924Z Brassica rapa HOM05D007639 ORTHO05D009509 1.9e-34 152.1 188 45.7
AT1G19290 Arabidopsis thaliana HOM05D007639 ORTHO05D009509 2.5e-34 151.8 203 43.3
AL1G31880 Arabidopsis lyrata HOM05D007639 ORTHO05D009509 3.2e-34 151.4 161 46.6
Thhalv10006776m.g Eutrema salsugineum HOM05D007639 ORTHO05D009509 5.5e-34 150.6 161 46.6
Psat3g155040 Pisum sativum HOM05D000871 ORTHO05D000770 9.4e-34 149.8 82 93.9
A08p29890 Brassica napus HOM05D007639 ORTHO05D009509 1.6e-33 149.1 161 47.8
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 2.7e-33 148.3 155 49.0
Ah.04g165440 Amaranthus hybridus HOM05D007639 ORTHO05D009509 3.6e-33 147.9 164 47.0
Oeu009601.2 Olea europaea HOM05D007639 ORTHO05D009509 3.6e-33 147.9 155 49.7
Sp1g17190 Schrenkiella parvula HOM05D007639 ORTHO05D009509 3.6e-33 147.9 203 41.9
C08p19350 Brassica napus HOM05D007639 ORTHO05D009509 4.7e-33 147.5 188 45.2
QL02p007279 Quercus lobata HOM05D007639 ORTHO05D009509 4.7e-33 147.5 191 46.6
Aqoxy6G01002 Aquilegia oxysepala HOM05D007639 ORTHO05D009509 6.1e-33 147.1 189 44.4
Migut.L00762 Erythranthe guttata HOM05D007639 ORTHO05D009509 6.1e-33 147.1 155 49.7
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 7.9e-33 146.7 197 46.2
BcaC07g38995 Brassica carinata HOM05D007639 ORTHO05D009509 7.9e-33 146.7 188 44.7
BolC8t49556H Brassica oleracea HOM05D007639 ORTHO05D009509 7.9e-33 146.7 188 44.7
Solyc04g079850.2 Solanum lycopersicum HOM05D007639 ORTHO05D009509 7.9e-33 146.7 190 46.8
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 1.0e-32 146.4 167 46.7
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 2.3e-32 145.2 158 46.8
Actinidia05689 Actinidia chinensis HOM05D007639 ORTHO05D009509 3.0e-32 144.8 211 38.9
SalBow7G0144 Salvia bowleyana HOM05D007639 ORTHO05D009509 3.0e-32 144.8 158 46.8
Peaxi162Scf00057g00149 Petunia axillaris HOM05D000909 ORTHO05D009509 6.7e-32 143.7 159 47.2
PSO675G4860 Papaver somniferum HOM05D007639 ORTHO05D009509 8.8e-32 143.3 178 42.7
Sopen04g033420 Solanum pennellii HOM05D007639 ORTHO05D009509 1.5e-31 142.5 175 46.3
SGA_v2.0_scaffold24G10272 Striga asiatica HOM05D007639 ORTHO05D009509 2.6e-31 141.7 159 45.9
ATR0733G078 Amborella trichopoda HOM05D007639 ORTHO05D009509 4.4e-31 141.0 194 40.2
Aa31LG7G3990 Aethionema arabicum HOM05D007639 ORTHO05D009509 9.7e-31 139.8 161 43.5
PSO541G4055 Papaver somniferum HOM05D007639 ORTHO05D009509 3.5e-28 131.3 178 39.9
CAN.G371.124 Capsicum annuum HOM05D007639 ORTHO05D009509 1.3e-27 129.4 148 47.3
Glyma.15G197000 Glycine max HOM05D007639 ORTHO05D009509 2.9e-27 128.3 86 80.2
HPP92_006134 Vanilla planifolia HOM05D007639 ORTHO05D009509 5.7e-23 114.0 153 41.2
Os05g0275100 Oryza sativa ssp. japonica HOM05D007639 ORTHO05D009509 1.5e-18 99.4 196 37.2
SEGI_21536 Sequoiadendron giganteum HOM05D007639 ORTHO05D009509 2.6e-15 88.6 182 33.5
Lsat_1_v5_gn_4_37641 Lactuca sativa HOM05D007639 ORTHO05D009509 1.8e-13 82.4 84 51.2
Zm00001eb327830 Zea mays HOM05D007639 ORTHO05D009509 1.8e-13 82.4 197 35.0
HanXRQChr17g0537401 Helianthus annuus HOM05D007358 ORTHO05D009117 1.3e-11 76.3 133 36.1
COL.COLO4_26382 Corchorus olitorius HOM05D007639 ORTHO05D009509 1.7e-11 75.9 84 52.4
Lj4C46T20 Lonicera japonica HOM05D007639 ORTHO05D009509 1.7e-11 75.9 86 45.3
Gohir.A05G197000 Gossypium hirsutum HOM05D007639 ORTHO05D009509 5.0e-11 74.3 85 47.1
Lsat_1_v5_gn_3_20581 Lactuca sativa HOM05D007358 ORTHO05D009117 6.5e-11 73.9 132 34.1
CDE04G3788 Ceratophyllum demersum HOM05D007639 ORTHO05D009509 5.5e-10 70.9 83 41.0
Thecc.08G021400 Theobroma cacao HOM05D007639 ORTHO05D009509 2.7e-09 68.6 50 64.0
Eucgr.I01754 Eucalyptus grandis HOM05D007358 ORTHO05D009117 3.6e-09 68.2 135 32.6
Migut.F01873 Erythranthe guttata HOM05D007358 ORTHO05D009117 6.1e-09 67.4 143 29.4
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 1.4e-08 66.2 132 31.8
SalBow6G1669 Salvia bowleyana HOM05D007358 ORTHO05D009117 1.8e-08 65.9 199 27.6
CAN.G371.126 Capsicum annuum HOM05D007639 ORTHO05D009509 4.0e-08 64.7 84 40.5
Atru.BG.30.p Acer truncatum HOM05D007358 ORTHO05D009117 5.2e-08 64.3 148 28.4
Gohir.D11G070700 Gossypium hirsutum HOM05D007358 ORTHO05D009117 5.2e-08 64.3 135 31.1
Gorai.007G075800 Gossypium raimondii HOM05D007358 ORTHO05D009117 5.2e-08 64.3 135 31.1
MD09G1028300 Malus domestica HOM05D007358 ORTHO05D009117 5.2e-08 64.3 126 30.2
Rhsim11G0131500 Rhododendron simsii HOM05D007358 ORTHO05D009117 5.2e-08 64.3 198 30.3
Nitab4.5_0000110g0140 Nicotiana tabacum HOM05D007639 ORTHO05D009509 6.8e-08 63.9 79 43.0
SEGI_39043 Sequoiadendron giganteum HOM05D007623 ORTHO05D009641 1.2e-07 63.2 171 28.7
Sc16g0008150 Simmondsia chinensis HOM05D007390 ORTHO05D009114 1.2e-07 63.2 157 31.2
GSVIVG01008360001 Vitis vinifera HOM05D007358 ORTHO05D009117 1.2e-07 63.2 213 27.2
CANSAT64G1792 Cannabis sativa HOM05D007358 ORTHO05D009117 1.5e-07 62.8 138 29.0
CDE04G1234 Ceratophyllum demersum HOM05D007358 ORTHO05D009117 1.5e-07 62.8 194 28.4
Nitab4.5_0006518g0030 Nicotiana tabacum HOM05D007639 ORTHO05D009509 2.0e-07 62.4 79 41.8
Potri.017G071600 Populus trichocarpa HOM05D007358 ORTHO05D009117 2.6e-07 62.0 156 25.0
RcHm_v2.0_Chr2g0173011 Rosa chinensis HOM05D007358 ORTHO05D009117 2.6e-07 62.0 163 28.8
COL.COLO4_29095 Corchorus olitorius HOM05D007358 ORTHO05D009117 3.4e-07 61.6 138 30.4
Lj2g0007949 Lotus japonicus HOM05D006858 ORTHO05D008767 3.4e-07 61.6 146 34.9
Haze_07298 Corylus avellana HOM05D007763 ORTHO05D010304 4.4e-07 61.2 176 29.5
Rhsim08G0152400 Rhododendron simsii HOM05D000001 ORTHO05D010304 4.4e-07 61.2 136 29.4
Oeu037939.3 Olea europaea HOM05D007358 ORTHO05D009117 7.5e-07 60.5 127 27.6
Phvul.004G009945 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 7.5e-07 60.5 204 25.0
Nitab4.5_0000163g0140 Nicotiana tabacum HOM05D007390 ORTHO05D009114 9.8e-07 60.1 96 36.5
TPR.G6545 Trifolium pratense HOM05D007893 ORTHO05D010042 1.3e-06 59.7 96 34.4
Ah.01g004590 Amaranthus hybridus HOM05D007358 ORTHO05D009117 1.7e-06 59.3 197 28.4
CSS0010405 Camellia sinensis var. sinensis HOM05D007358 ORTHO05D009117 1.7e-06 59.3 128 33.6
ClCG09G019220 Citrullus lanatus HOM05D007358 ORTHO05D009117 1.7e-06 59.3 210 25.7
Nitab4.5_0000756g0010 Nicotiana tabacum HOM05D007390 ORTHO05D009114 1.7e-06 59.3 96 35.4
SGA_v2.0_scaffold122G33180 Striga asiatica HOM05D007358 ORTHO05D009117 1.7e-06 59.3 205 25.9
Thecc.04G015800 Theobroma cacao HOM05D007358 ORTHO05D009117 1.7e-06 59.3 122 32.0
CSS0022172 Camellia sinensis var. sinensis HOM05D007358 ORTHO05D009117 2.2e-06 58.9 128 32.8
Hund17802 Selenicereus undatus HOM05D007358 ORTHO05D009117 2.2e-06 58.9 124 33.1
CsaV3_5G027190 Cucumis sativus L. HOM05D007358 ORTHO05D009117 2.8e-06 58.5 172 26.2
Medtr1g033960 Medicago truncatula HOM05D006858 ORTHO05D008767 2.8e-06 58.5 161 28.0
Prupe.3G290200 Prunus persica HOM05D007358 ORTHO05D009117 2.8e-06 58.5 117 29.1
Gohir.A11G066500 Gossypium hirsutum HOM05D007358 ORTHO05D009117 3.7e-06 58.2 134 29.1
Lsat_1_v5_gn_6_101541 Lactuca sativa HOM05D007390 ORTHO05D009114 3.7e-06 58.2 95 32.6
Lj2g0013463 Lotus japonicus HOM05D007358 ORTHO05D009117 3.7e-06 58.2 135 27.4
Phvul.004G009341 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 3.7e-06 58.2 204 25.0
Phvul.004G009809 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 3.7e-06 58.2 204 25.0
vmacro09644 Vaccinium macrocarpon HOM05D007390 ORTHO05D009114 3.7e-06 58.2 96 33.3
Aa31LG9G1210 Aethionema arabicum HOM05D007358 ORTHO05D009117 4.9e-06 57.8 172 27.3
PGR142G1723 Punica granatum HOM05D007358 ORTHO05D009117 4.9e-06 57.8 119 30.3
Atru.chr12.1670 Acer truncatum HOM05D007763 ORTHO05D009537 6.3e-06 57.4 131 29.8
MSTRG.8212 Avicennia marina HOM05D007358 ORTHO05D009117 6.3e-06 57.4 141 25.5
Ciclev10018361m.g Citrus clementina HOM05D007358 ORTHO05D009117 6.3e-06 57.4 118 28.8
Dinv23568 Davidia involucrata HOM05D007675 ORTHO05D009699 6.3e-06 57.4 151 27.8
CSS0024662 Camellia sinensis var. sinensis HOM05D007390 ORTHO05D009114 8.3e-06 57.0 96 31.2
CSS0045615 Camellia sinensis var. sinensis HOM05D007390 ORTHO05D009114 8.3e-06 57.0 96 31.2
Lalb_Chr24g0394951 Lupinus albus HOM05D007358 ORTHO05D009117 8.3e-06 57.0 117 29.9
Sabra17G0060800 Salix brachista HOM05D007358 ORTHO05D009117 8.3e-06 57.0 174 24.1


User provided reference genes

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