Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 2.4e-162 575.5 297 100.0
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 1.0e-144 516.9 297 88.9
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 2.1e-142 509.2 297 87.9
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 7.0e-138 494.2 292 86.3
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 4.4e-132 474.9 298 79.5
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 3.2e-130 468.8 297 78.5
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 4.1e-130 468.4 297 79.8
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 1.6e-129 466.5 297 78.5
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 1.1e-127 460.3 297 79.1
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 4.7e-126 454.9 297 77.4
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 1.4e-125 453.4 297 77.8
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 3.4e-124 448.7 297 76.4
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 3.4e-124 448.7 297 74.7
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 7.5e-124 447.6 297 75.4
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 2.2e-123 446.0 297 74.7
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 2.2e-123 446.0 297 75.1
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 4.9e-123 444.9 297 74.4
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 1.1e-122 443.7 297 74.7
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 1.4e-122 443.4 341 67.7
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 2.4e-122 442.6 297 76.4
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 9.2e-122 440.7 298 74.2
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 6.0e-121 438.0 294 75.2
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 1.7e-120 436.4 305 73.1
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 3.0e-120 435.6 299 72.9
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 3.0e-120 435.6 297 75.4
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 5.1e-120 434.9 297 73.4
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 1.1e-119 433.7 297 74.7
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 1.1e-119 433.7 297 73.1
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 1.5e-119 433.3 295 75.6
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 1.5e-119 433.3 302 74.5
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 1.9e-119 433.0 297 73.7
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 2.5e-119 432.6 297 73.1
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 2.5e-119 432.6 305 72.5
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.5e-119 432.6 298 72.8
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.5e-119 432.6 298 72.8
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 2.5e-119 432.6 297 75.1
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 4.3e-119 431.8 297 75.4
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 4.3e-119 431.8 297 75.1
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 7.3e-119 431.0 297 73.1
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 9.5e-119 430.6 297 73.4
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 9.5e-119 430.6 297 71.4
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 1.2e-118 430.3 297 75.1
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 2.8e-118 429.1 297 73.7
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 6.2e-118 427.9 297 73.4
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 1.1e-117 427.2 297 72.7
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.4e-117 426.8 297 71.4
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 1.8e-117 426.4 298 73.5
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 2.3e-117 426.0 294 71.8
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 2.3e-117 426.0 298 72.8
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 4.0e-117 425.2 297 73.7
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 5.2e-117 424.9 297 71.4
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 6.8e-117 424.5 297 72.1
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 8.9e-117 424.1 294 71.8
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 1.2e-116 423.7 297 71.7
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 1.2e-116 423.7 297 72.1
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 1.2e-116 423.7 294 71.4
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 1.5e-116 423.3 297 73.1
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.5e-116 423.3 315 69.2
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 3.4e-116 422.2 298 72.5
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 5.8e-116 421.4 295 72.5
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 5.8e-116 421.4 315 68.9
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 5.8e-116 421.4 294 72.1
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 1.7e-115 419.9 294 71.1
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 2.2e-115 419.5 295 71.2
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 2.2e-115 419.5 295 71.2
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 6.4e-115 417.9 315 68.6
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 8.3e-115 417.5 297 70.7
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 4.1e-114 415.2 297 70.4
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 4.1e-114 415.2 282 74.5
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 1.6e-113 413.3 295 69.5
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 1.6e-113 413.3 297 71.0
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 1.6e-113 413.3 294 71.1
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 2.1e-113 412.9 297 70.0
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 3.5e-113 412.1 297 71.0
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 3.5e-113 412.1 295 71.9
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 3.5e-113 412.1 294 70.7
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 1.0e-112 410.6 296 67.9
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 1.0e-112 410.6 295 71.5
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 1.3e-112 410.2 297 70.0
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 1.7e-112 409.8 293 70.0
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 2.3e-112 409.5 297 71.4
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 3.0e-112 409.1 295 70.5
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 3.9e-112 408.7 295 69.5
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 5.1e-112 408.3 295 70.5
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 6.6e-112 407.9 295 70.8
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 8.6e-112 407.5 297 70.0
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 1.1e-111 407.1 298 69.1
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 1.9e-111 406.4 297 69.0
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 1.9e-111 406.4 297 69.7
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 2.5e-111 406.0 296 68.2
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 5.6e-111 404.8 295 70.5
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 5.6e-111 404.8 295 70.5
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 5.6e-111 404.8 295 70.5
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 3.6e-110 402.1 297 68.4
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 4.7e-110 401.7 298 68.1
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 6.2e-110 401.4 295 69.8
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 6.2e-110 401.4 293 69.3
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 6.2e-110 401.4 276 73.6
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 1.1e-109 400.6 288 69.8
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 5.2e-109 398.3 282 71.6
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 5.2e-109 398.3 297 67.3
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 8.9e-109 397.5 295 69.5
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 2.9e-107 392.5 261 74.7
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 3.8e-107 392.1 250 77.2
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 2.4e-106 389.4 295 69.2
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 2.3e-104 382.9 287 65.9
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 1.2e-102 377.1 297 65.0
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.4e-98 363.6 320 60.0
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 3.3e-95 352.4 297 63.0
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 7.3e-95 351.3 297 63.6
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 1.7e-91 340.1 297 63.0
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 4.2e-90 335.5 279 64.5
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 8.7e-88 327.8 291 56.7
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 8.7e-88 327.8 219 75.8
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 2.8e-86 322.8 223 73.5
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 3.1e-85 319.3 216 72.7
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 5.3e-85 318.5 294 56.1
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 2.6e-84 316.2 223 71.3
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 2.9e-83 312.8 294 55.8
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 1.8e-80 303.5 294 54.1
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 2.5e-79 299.7 290 53.8
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 1.1e-77 294.3 223 68.6
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 5.8e-76 288.5 280 57.5
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 5.8e-76 288.5 262 54.2
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 1.3e-75 287.3 216 65.7
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 2.2e-75 286.6 295 51.5
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 4.3e-71 272.3 231 62.8
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 5.9e-68 261.9 177 74.0
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 1.9e-66 256.9 177 73.4
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 3.6e-65 252.7 255 51.4
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 3.8e-59 232.6 203 61.1
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 3.9e-56 222.6 149 73.2
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 3.3e-55 219.5 150 72.7
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 1.3e-51 207.6 162 61.1
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 1.3e-51 207.6 143 67.1
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.7e-49 199.9 135 72.6
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 7.7e-44 181.8 266 36.8
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 1.1e-42 177.9 151 63.6
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 9.7e-39 164.9 182 53.3
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 3.7e-38 162.9 106 76.4
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 7.5e-31 138.7 103 70.9
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 1.7e-30 137.5 107 68.2
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 3.7e-30 136.3 98 65.3
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 4.8e-30 136.0 308 31.5
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 2.1e-25 120.6 270 29.3
FvH4_3g11480 Fragaria vesca HOM05D004415 ORTHO05D005198 6.3e-22 109.0 81 65.4
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 1.4e-21 107.8 113 55.8
Cc09_g04070 Coffea canephora HOM05D004415 ORTHO05D005198 1.1e-18 98.2 65 75.4
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 4.4e-15 86.3 126 44.4
arahy.Tifrunner.gnm1.ann1.LII2ER Arachis hypogaea HOM05D004415 ORTHO05D005198 2.9e-14 83.6 113 46.0
arahy.Tifrunner.gnm1.ann1.8SCZ96 Arachis hypogaea HOM05D004415 ORTHO05D005198 1.1e-13 81.6 113 45.1
VMungo0331G0484 Vigna mungo HOM05D003730 ORTHO05D005198 1.2e-09 68.2 42 78.6
BcaB03g15995 Brassica carinata HOM05D004415 ORTHO05D005198 1.6e-09 67.8 83 50.6
HanXRQChr04g0119531 Helianthus annuus HOM05D004415 ORTHO05D005198 8.9e-08 62.0 52 61.5


User provided reference genes

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