Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g018720 Pisum sativum HOM05D005423 ORTHO05D006223 8.2e-107 390.6 222 100.0
Medtr2g047120 Medicago truncatula HOM05D005423 ORTHO05D006223 6.3e-75 284.6 224 78.1
TPR.G22906 Trifolium pratense HOM05D005423 ORTHO05D006223 5.5e-71 271.6 247 71.3
Ca_02385_v3 Cicer arietinum L. HOM05D005423 ORTHO05D006223 9.8e-68 260.8 184 74.5
Lj6g0018842 Lotus japonicus HOM05D005423 ORTHO05D006223 1.3e-51 207.2 177 58.8
Glyma.15G191500 Glycine max HOM05D005423 ORTHO05D006223 7.3e-39 164.9 189 52.4
MD00G1097400 Malus domestica HOM05D005423 ORTHO05D006223 2.6e-36 156.4 198 50.0
Manes.03G066900 Manihot esculenta HOM05D005423 ORTHO05D006223 2.6e-36 156.4 171 50.9
Cfa000754 Carpinus fangiana HOM05D005423 ORTHO05D006223 4.4e-36 155.6 187 48.1
Lj1P1155T48 Lonicera japonica HOM05D005423 ORTHO05D006223 2.1e-33 146.7 155 51.0
TWI38G0231 Tripterygium wilfordii HOM05D005423 ORTHO05D006223 2.1e-33 146.7 134 54.5
Lalb_Chr11g0073251 Lupinus albus HOM05D005423 ORTHO05D006223 1.3e-32 144.1 195 45.6
CANSAT35G1706 Cannabis sativa HOM05D005423 ORTHO05D006223 2.3e-32 143.3 157 50.3
Prupe.4G102300 Prunus persica HOM05D005423 ORTHO05D006223 3.0e-32 142.9 143 53.8
TAR636G0950 Trochodendron aralioides HOM05D005423 ORTHO05D006223 3.9e-32 142.5 151 49.0
FvH4_3g11440 Fragaria vesca HOM05D005423 ORTHO05D006223 6.6e-32 141.7 144 50.0
CiPaw.09G149100 Carya illinoinensis HOM05D005423 ORTHO05D006223 8.6e-32 141.4 137 52.6
Hma1.2p1_0410F.1_g147050 Hydrangea macrophylla HOM05D005423 ORTHO05D006223 1.5e-31 140.6 142 54.2
FAN16G1003 Fragaria x ananassa HOM05D005423 ORTHO05D006223 2.5e-31 139.8 144 49.3
Atru.chr10.659 Acer truncatum HOM05D005423 ORTHO05D006223 4.3e-31 139.0 144 51.4
Ciclev10017493m.g Citrus clementina HOM05D005423 ORTHO05D006223 7.3e-31 138.3 156 48.7
QL05p063092 Quercus lobata HOM05D005423 ORTHO05D006223 2.1e-30 136.7 140 51.4
AUR62028668 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.8e-30 136.3 151 47.7
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 6.2e-30 135.2 152 50.0
Thecc.06G005400 Theobroma cacao HOM05D005423 ORTHO05D006223 6.2e-30 135.2 151 49.0
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.1e-29 134.4 163 46.0
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 4.0e-29 132.5 154 49.4
AUR62008089 Chenopodium quinoa HOM05D005423 ORTHO05D006223 6.8e-29 131.7 164 45.1
EL10Ac5g10610 Beta vulgaris HOM05D005423 ORTHO05D006223 2.6e-28 129.8 175 41.7
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 2.6e-28 129.8 154 48.7
AUR62008091 Chenopodium quinoa HOM05D005423 ORTHO05D006223 9.9e-28 127.9 151 47.0
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 9.9e-28 127.9 181 45.3
AUR62008092 Chenopodium quinoa HOM05D005423 ORTHO05D006223 4.9e-27 125.6 163 43.6
Potri.001G440800 Populus trichocarpa HOM05D005423 ORTHO05D006223 6.4e-27 125.2 137 47.4
HanXRQChr01g0020631 Helianthus annuus HOM05D005423 ORTHO05D006223 1.9e-26 123.6 155 43.2
Gohir.A02G088801 Gossypium hirsutum HOM05D005423 ORTHO05D006223 5.4e-26 122.1 148 45.3
SGA_v2.0_scaffold1G00298 Striga asiatica HOM05D005423 ORTHO05D006223 7.1e-26 121.7 146 47.9
Gohir.D02G104700 Gossypium hirsutum HOM05D005423 ORTHO05D006223 9.2e-26 121.3 148 45.3
Gorai.005G118900 Gossypium raimondii HOM05D005423 ORTHO05D006223 9.2e-26 121.3 148 45.3
Rhsim13G0126500 Rhododendron simsii HOM05D005423 ORTHO05D006223 1.6e-25 120.6 169 42.6
Ah.02g124440 Amaranthus hybridus HOM05D005423 ORTHO05D006223 2.7e-25 119.8 208 37.5
Phvul.009G218400 Phaseolus vulgaris HOM05D005423 ORTHO05D006223 6.0e-25 118.6 180 47.2
Haze_05969 Corylus avellana HOM05D005423 ORTHO05D006223 1.3e-24 117.5 107 56.1
Lsat_1_v5_gn_1_91741 Lactuca sativa HOM05D005423 ORTHO05D006223 1.7e-24 117.1 159 40.9
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 2.3e-24 116.7 135 47.4
EL10Ac5g10674 Beta vulgaris HOM05D005423 ORTHO05D006223 3.0e-24 116.3 161 39.8
Sopen11g030350 Solanum pennellii HOM05D005423 ORTHO05D006223 8.6e-24 114.8 135 46.7
Aqoxy2G01436 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 1.1e-23 114.4 147 42.9
EL10Ac5g10640 Beta vulgaris HOM05D005423 ORTHO05D006223 1.1e-23 114.4 152 42.8
Migut.M01932 Erythranthe guttata HOM05D005423 ORTHO05D006223 1.1e-23 114.4 163 40.5
Solyc11g072680.1 Solanum lycopersicum HOM05D005423 ORTHO05D006223 1.1e-23 114.4 135 46.7
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 1.9e-23 113.6 186 38.2
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 3.3e-23 112.8 155 45.2
Sp1g26680 Schrenkiella parvula HOM05D005423 ORTHO05D006223 5.6e-23 112.1 150 45.3
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.2e-22 110.9 146 45.2
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 2.1e-22 110.2 148 43.2
Thhalv10009325m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 2.1e-22 110.2 152 42.8
Sabra16G0300100 Salix brachista HOM05D005423 ORTHO05D006223 2.1e-22 110.2 103 54.4
CAN.G84.20 Capsicum annuum HOM05D005423 ORTHO05D006223 2.8e-22 109.8 144 41.7
COL.COLO4_26869 Corchorus olitorius HOM05D005423 ORTHO05D006223 2.8e-22 109.8 137 46.0
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 3.6e-22 109.4 148 43.9
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 3.6e-22 109.4 148 43.9
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 4.7e-22 109.0 148 43.2
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 4.7e-22 109.0 148 43.2
Sabra16G0298100 Salix brachista HOM05D005423 ORTHO05D006223 4.7e-22 109.0 103 53.4
Carub.0006s3088 Capsella rubella HOM05D005423 ORTHO05D006223 8.1e-22 108.2 149 43.6
Sc21g0002200 Simmondsia chinensis HOM05D005423 ORTHO05D006223 1.4e-21 107.5 142 45.1
FAN21G0600 Fragaria x ananassa HOM05D005423 ORTHO05D006223 2.4e-21 106.7 80 60.0
FAN25G0767 Fragaria x ananassa HOM05D005423 ORTHO05D006223 2.4e-21 106.7 97 51.5
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 5.2e-21 105.5 152 42.1
Sc21g0002210 Simmondsia chinensis HOM05D005423 ORTHO05D006223 1.5e-20 104.0 139 44.6
PSO782G2497 Papaver somniferum HOM05D005423 ORTHO05D006223 2.0e-20 103.6 143 40.6
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 2.6e-20 103.2 148 42.6
MBI19_g30013_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 7.6e-20 101.7 135 42.2
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 1.3e-19 100.9 148 43.2
CDE04G0856 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 1.3e-19 100.9 164 37.2
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 4.9e-19 99.0 148 41.9
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 6.4e-19 98.6 148 41.2
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 1.1e-18 97.8 148 41.9
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 1.9e-18 97.1 137 42.3
Oeu063151.1 Olea europaea HOM05D005423 ORTHO05D006223 4.2e-18 95.9 80 55.0
BcaB01g00727 Brassica carinata HOM05D005423 ORTHO05D006223 5.4e-18 95.5 148 40.5
Thhalv10026388m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 1.6e-17 94.0 147 38.1
Oeu000496.1 Olea europaea HOM05D005423 ORTHO05D006223 2.1e-17 93.6 80 53.8
Sp7g27780 Schrenkiella parvula HOM05D005423 ORTHO05D006223 7.8e-17 91.7 130 39.2
CARHR237890 Cardamine hirsuta HOM05D005423 ORTHO05D006223 1.7e-16 90.5 139 37.4
PSO210G3101 Papaver somniferum HOM05D005423 ORTHO05D006223 3.0e-16 89.7 135 38.5
AT4G12950 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 5.1e-16 89.0 136 39.7
CDE04G2898 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 1.1e-15 87.8 156 35.3
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.5e-15 87.4 153 34.0
A03p59360 Brassica napus HOM05D005423 ORTHO05D006223 2.5e-15 86.7 130 38.5
BraA03t14993Z Brassica rapa HOM05D005423 ORTHO05D006223 2.5e-15 86.7 130 38.5
AL7G22260 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 3.3e-15 86.3 145 37.2
FAN23G0143 Fragaria x ananassa HOM05D005423 ORTHO05D006223 3.3e-15 86.3 95 48.4
C07p57390 Brassica napus HOM05D005423 ORTHO05D006223 7.3e-15 85.1 130 37.7
BolC7t46208H Brassica oleracea HOM05D005423 ORTHO05D006223 7.3e-15 85.1 130 37.7
AT4G29980 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 9.6e-15 84.7 145 35.9
BcaNung00507 Brassica carinata HOM05D005423 ORTHO05D006223 1.3e-14 84.3 131 38.9
FvH4_5g18240 Fragaria vesca HOM05D005423 ORTHO05D006223 1.6e-14 84.0 90 51.1
AUR62007135 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.1e-14 83.6 108 45.4
Carub.0007s1066 Capsella rubella HOM05D005423 ORTHO05D006223 2.8e-14 83.2 183 33.3
FAN18G3875 Fragaria x ananassa HOM05D005423 ORTHO05D006223 2.8e-14 83.2 97 48.5
Potri.011G155150 Populus trichocarpa HOM05D005423 ORTHO05D006223 1.1e-13 81.3 92 45.7
MBI19_g33491_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 6.9e-13 78.6 128 39.8
FvH4_1g24910 Fragaria vesca HOM05D005423 ORTHO05D006223 1.2e-12 77.8 91 48.4
DCAR_001448 Daucus carota HOM05D005423 ORTHO05D006223 3.4e-12 76.3 144 32.6
Thhalv10027436m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 4.5e-12 75.9 169 32.5
FvH4_5g21920 Fragaria vesca HOM05D005423 ORTHO05D006223 7.6e-12 75.1 94 46.8
BcaC07g40588 Brassica carinata HOM05D005423 ORTHO05D006223 1.7e-11 73.9 74 50.0
Duzib043G0004 Durio zibethinus HOM05D005423 ORTHO05D006223 4.9e-11 72.4 138 38.4
BcaC09g50401 Brassica carinata HOM05D005423 ORTHO05D006223 2.4e-10 70.1 74 51.4
BraA03t15014Z Brassica rapa HOM05D005423 ORTHO05D006223 2.4e-10 70.1 133 33.1
Sp7g28070 Schrenkiella parvula HOM05D005423 ORTHO05D006223 1.2e-09 67.8 130 33.8
A03p59580 Brassica napus HOM05D005423 ORTHO05D006223 2.7e-09 66.6 133 30.8
Pp3c6_3400 Physcomitrium patens HOM05D005423 ORTHO05D006223 2.7e-09 66.6 143 33.6
DCAR_002955 Daucus carota HOM05D005423 ORTHO05D006223 6.0e-09 65.5 91 38.5
Mapoly0033s0033 Marchantia polymorpha HOM05D005423 ORTHO05D006223 1.8e-08 63.9 131 32.8
AL7G23530 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 2.3e-08 63.5 95 37.9
arahy.Tifrunner.gnm1.ann1.E5JI7C Arachis hypogaea HOM05D002727 ORTHO05D002856 2.3e-08 63.5 179 27.4
SMO220G0003 Selaginella moellendorffii HOM05D002232 ORTHO05D002323 3.0e-08 63.2 137 33.6
arahy.Tifrunner.gnm1.ann1.NZR7KS Arachis hypogaea HOM05D002727 ORTHO05D002856 5.1e-08 62.4 179 27.4
FAN11G1050 Fragaria x ananassa HOM05D005423 ORTHO05D006223 5.1e-08 62.4 81 48.1
A09p38220 Brassica napus HOM05D005423 ORTHO05D006223 6.7e-08 62.0 63 55.6
FAN03G0475 Fragaria x ananassa HOM05D005423 ORTHO05D006223 8.7e-08 61.6 72 48.6
FAN14G5542 Fragaria x ananassa HOM05D005423 ORTHO05D006223 8.7e-08 61.6 72 48.6
Sc12g0002500 Simmondsia chinensis HOM05D007205 ORTHO05D009175 8.7e-08 61.6 152 31.6
TWI31G0537 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 1.5e-07 60.8 173 34.7
FAN18G0575 Fragaria x ananassa HOM05D005423 ORTHO05D006223 3.3e-07 59.7 72 47.2
Nn8g39654 Nelumbo nucifera HOM05D005423 ORTHO05D006223 4.3e-07 59.3 130 30.0
Psat6g221920 Pisum sativum HOM05D002727 ORTHO05D002856 9.6e-07 58.2 162 25.9
CsaV3_6G037300 Cucumis sativus L. HOM05D005305 ORTHO05D006394 1.3e-06 57.8 181 27.1
MD13G1026900 Malus domestica HOM05D002727 ORTHO05D002856 1.3e-06 57.8 135 30.4
Aqoxy7G03258 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 1.6e-06 57.4 70 42.9
CARHR238100 Cardamine hirsuta HOM05D005423 ORTHO05D006223 1.6e-06 57.4 79 38.0
Glyma.10G265700 Glycine max HOM05D002727 ORTHO05D002856 2.1e-06 57.0 131 29.8
FvH4_6g29350 Fragaria vesca HOM05D005423 ORTHO05D006223 3.6e-06 56.2 59 49.2
Carub.0007s1174 Capsella rubella HOM05D005423 ORTHO05D006223 4.8e-06 55.8 90 42.2
Cpa.g.sc72.34 Carica papaya HOM05D005305 ORTHO05D006394 4.8e-06 55.8 162 32.7
Nn3g16463 Nelumbo nucifera HOM05D002727 ORTHO05D002856 4.8e-06 55.8 179 27.9
PSO017G6820 Papaver somniferum HOM05D002727 ORTHO05D002856 4.8e-06 55.8 111 34.2
A08p31700 Brassica napus HOM05D005305 ORTHO05D006394 6.2e-06 55.5 115 34.8
PSO478G1097 Papaver somniferum HOM05D002727 ORTHO05D002856 6.2e-06 55.5 111 33.3
BraA08t35092Z Brassica rapa HOM05D005305 ORTHO05D006394 8.1e-06 55.1 116 34.5
Thhalv10009974m.g Eutrema salsugineum HOM05D005305 ORTHO05D006394 8.1e-06 55.1 178 29.8
PSO017G3536 Papaver somniferum HOM05D002727 ORTHO05D002856 8.1e-06 55.1 111 34.2


User provided reference genes

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