Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g017920 Pisum sativum HOM05D006914 ORTHO05D008583 1.3e-51 206.1 103 100.0
Glyma.04G155300 Glycine max HOM05D006914 ORTHO05D008583 2.3e-43 178.7 104 85.6
TPR.G25932 Trifolium pratense HOM05D006914 ORTHO05D008583 3.9e-43 177.9 104 84.6
Glyma.06G225000 Glycine max HOM05D006914 ORTHO05D008583 5.0e-43 177.6 104 85.6
Phvul.007G242700 Phaseolus vulgaris HOM05D006914 ORTHO05D008583 9.5e-42 173.3 104 82.7
Medtr2g046160 Medicago truncatula HOM05D006914 ORTHO05D008583 2.8e-41 171.8 104 81.7
Lalb_Chr11g0072501 Lupinus albus HOM05D006914 ORTHO05D008583 2.3e-40 168.7 104 81.7
VMungo0720G1978 Vigna mungo HOM05D006914 ORTHO05D008583 2.3e-40 168.7 102 83.3
Ca_02367_v3 Cicer arietinum L. HOM05D006914 ORTHO05D008583 1.3e-38 162.9 99 80.8
Cpa.g.sc46.184 Carica papaya HOM05D006914 ORTHO05D008583 3.2e-37 158.3 103 76.7
Lj6g0027463 Lotus japonicus HOM05D006914 ORTHO05D008583 9.2e-37 156.8 105 75.2
RcHm_v2.0_Chr2g0085261 Rosa chinensis HOM05D006914 ORTHO05D008583 1.2e-36 156.4 104 75.0
FAN23G1758 Fragaria x ananassa HOM05D006914 ORTHO05D008583 4.6e-36 154.5 104 73.1
Ciclev10009995m.g Citrus clementina HOM05D006914 ORTHO05D008583 6.0e-36 154.1 104 74.0
Thecc.09G152600 Theobroma cacao HOM05D006914 ORTHO05D008583 6.0e-36 154.1 104 75.0
Atru.chr7.325 Acer truncatum HOM05D006914 ORTHO05D008583 1.3e-35 152.9 104 72.1
FAN26G2758 Fragaria x ananassa HOM05D006914 ORTHO05D008583 2.3e-35 152.1 104 72.1
Gohir.D08G256600 Gossypium hirsutum HOM05D006914 ORTHO05D008583 2.3e-35 152.1 104 74.0
Gorai.004G273700 Gossypium raimondii HOM05D006914 ORTHO05D008583 2.3e-35 152.1 104 74.0
PGR102G2895 Punica granatum HOM05D006914 ORTHO05D008583 6.6e-35 150.6 104 70.2
GSVIVG01008452001 Vitis vinifera HOM05D006914 ORTHO05D008583 8.6e-35 150.2 104 73.1
MD15G1149500 Malus domestica HOM05D006914 ORTHO05D008583 1.1e-34 149.8 104 72.1
Duzib187G0910 Durio zibethinus HOM05D006914 ORTHO05D008583 1.5e-34 149.4 102 73.5
Hma1.2p1_2085F.1_g313670 Hydrangea macrophylla HOM05D006914 ORTHO05D008583 1.9e-34 149.1 100 72.0
Potri.006G181400 Populus trichocarpa HOM05D006914 ORTHO05D008583 1.9e-34 149.1 104 71.2
Nn8g40004 Nelumbo nucifera HOM05D006914 ORTHO05D008583 2.5e-34 148.7 105 69.5
Prupe.7G265800 Prunus persica HOM05D006914 ORTHO05D008583 2.5e-34 148.7 104 72.1
CiPaw.15G165400 Carya illinoinensis HOM05D006914 ORTHO05D008583 3.3e-34 148.3 104 72.1
FvH4_1g00640 Fragaria vesca HOM05D006914 ORTHO05D008583 3.3e-34 148.3 104 71.2
COL.COLO4_23940 Corchorus olitorius HOM05D006914 ORTHO05D008583 5.6e-34 147.5 102 71.6
HanXRQChr03g0066101 Helianthus annuus HOM05D006914 ORTHO05D008583 5.6e-34 147.5 95 73.7
TWI34G0278 Tripterygium wilfordii HOM05D006914 ORTHO05D008583 5.6e-34 147.5 104 72.1
CSS0049762 Camellia sinensis var. sinensis HOM05D006914 ORTHO05D008583 7.3e-34 147.1 105 70.5
AUR62015440 Chenopodium quinoa HOM05D006914 ORTHO05D008583 7.3e-34 147.1 105 68.6
MD02G1005200 Malus domestica HOM05D006914 ORTHO05D008583 7.3e-34 147.1 104 71.2
DCAR_019414 Daucus carota HOM05D006346 ORTHO05D007910 9.5e-34 146.7 99 72.7
Dinv41349 Davidia involucrata HOM05D006914 ORTHO05D008583 9.5e-34 146.7 94 74.5
Nitab4.5_0001448g0020 Nicotiana tabacum HOM05D006914 ORTHO05D008583 9.5e-34 146.7 103 70.9
Cfa020795 Carpinus fangiana HOM05D006914 ORTHO05D008583 1.2e-33 146.4 102 70.6
Duzib150G1072 Durio zibethinus HOM05D006914 ORTHO05D008583 1.2e-33 146.4 102 72.5
QL02p093962 Quercus lobata HOM05D006914 ORTHO05D008583 1.2e-33 146.4 101 73.3
Hund04582 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.2e-33 146.4 100 71.0
Nitab4.5_0009003g0040 Nicotiana tabacum HOM05D006914 ORTHO05D008583 1.6e-33 146.0 103 68.9
EL10Ac3g05865 Beta vulgaris HOM05D006914 ORTHO05D008583 2.1e-33 145.6 105 67.6
CANSAT56G0295 Cannabis sativa HOM05D006914 ORTHO05D008583 4.7e-33 144.4 102 71.6
TWI63G1652 Tripterygium wilfordii HOM05D006914 ORTHO05D008583 4.7e-33 144.4 104 69.2
AUR62002229 Chenopodium quinoa HOM05D006914 ORTHO05D008583 6.2e-33 144.1 103 68.9
Cc06_g14590 Coffea canephora HOM05D006914 ORTHO05D008583 6.2e-33 144.1 102 68.6
Peaxi162Scf00156g01316 Petunia axillaris HOM05D006914 ORTHO05D008583 8.1e-33 143.7 101 71.3
Ah.13g066550 Amaranthus hybridus HOM05D006914 ORTHO05D008583 1.1e-32 143.3 103 68.0
Actinidia28379 Actinidia chinensis HOM05D006914 ORTHO05D008583 1.8e-32 142.5 94 76.6
ECA240G0809 Erigeron canadensis HOM05D006914 ORTHO05D008583 2.3e-32 142.1 92 73.9
Lsat_1_v5_gn_7_49520 Lactuca sativa HOM05D006914 ORTHO05D008583 2.3e-32 142.1 94 72.3
MELO3C004120.2 Cucumis melo HOM05D006914 ORTHO05D008583 4.0e-32 141.4 104 67.3
MSTRG.10711 Avicennia marina HOM05D006914 ORTHO05D008583 6.8e-32 140.6 103 68.0
Actinidia23563 Actinidia chinensis HOM05D006914 ORTHO05D008583 8.9e-32 140.2 94 72.3
Migut.K00305 Erythranthe guttata HOM05D006914 ORTHO05D008583 8.9e-32 140.2 101 69.3
Manes.14G142700 Manihot esculenta HOM05D006914 ORTHO05D008583 2.0e-31 139.0 94 70.2
ClCG02G014340 Citrullus lanatus HOM05D006914 ORTHO05D008583 3.4e-31 138.3 104 65.4
Nitab4.5_0000233g0040 Nicotiana tabacum HOM05D006914 ORTHO05D008583 4.4e-31 137.9 92 72.8
CsaV3_2G007660 Cucumis sativus L. HOM05D006914 ORTHO05D008583 5.8e-31 137.5 94 71.3
Sed0012601 Sechium edule HOM05D006914 ORTHO05D008583 7.5e-31 137.1 104 66.3
Sopen05g034470 Solanum pennellii HOM05D006914 ORTHO05D008583 9.9e-31 136.7 89 75.3
TAR383G0505 Trochodendron aralioides HOM05D006914 ORTHO05D008583 1.3e-30 136.3 92 72.8
Oeu055276.1 Olea europaea HOM05D006914 ORTHO05D008583 1.7e-30 136.0 101 66.3
Sed0026010 Sechium edule HOM05D006914 ORTHO05D008583 3.7e-30 134.8 104 64.4
Oeu021334.1 Olea europaea HOM05D006914 ORTHO05D008583 1.1e-29 133.3 99 65.7
Aqoxy5G02159 Aquilegia oxysepala HOM05D006914 ORTHO05D008583 5.4e-29 131.0 103 61.2
AT5G57860 Arabidopsis thaliana HOM05D006914 ORTHO05D008583 9.2e-29 130.2 92 69.6
PSO111G0010 Papaver somniferum HOM05D006914 ORTHO05D008583 1.2e-28 129.8 95 64.2
CARHR271600 Cardamine hirsuta HOM05D006914 ORTHO05D008583 1.6e-28 129.4 92 69.6
unitig_748.g7196 Utricularia gibba HOM05D006914 ORTHO05D008583 1.6e-28 129.4 94 68.1
Thhalv10015128m.g Eutrema salsugineum HOM05D006914 ORTHO05D008583 2.1e-28 129.0 92 69.6
Sp6g19550 Schrenkiella parvula HOM05D006914 ORTHO05D008583 2.1e-28 129.0 92 69.6
AL8G33910 Arabidopsis lyrata HOM05D006914 ORTHO05D008583 2.7e-28 128.6 90 71.1
Carub.0008s1839 Capsella rubella HOM05D006914 ORTHO05D008583 3.5e-28 128.3 92 69.6
arahy.Tifrunner.gnm1.ann1.6E7PQ4 Arachis hypogaea HOM05D006914 ORTHO05D008583 6.0e-28 127.5 76 80.3
ATR0763G197 Amborella trichopoda HOM05D006914 ORTHO05D008583 1.0e-27 126.7 91 67.0
CDE05G0490 Ceratophyllum demersum HOM05D006914 ORTHO05D008583 1.0e-27 126.7 105 62.9
arahy.Tifrunner.gnm1.ann1.S2MTQV Arachis hypogaea HOM05D006914 ORTHO05D008583 5.1e-27 124.4 74 81.1
HPP92_020604 Vanilla planifolia HOM05D006914 ORTHO05D008583 5.1e-27 124.4 90 67.8
C02p13800 Brassica napus HOM05D006914 ORTHO05D008583 1.5e-26 122.9 90 67.8
BolC2t07499H Brassica oleracea HOM05D006914 ORTHO05D008583 1.5e-26 122.9 90 67.8
Rhsim03G0258700 Rhododendron simsii HOM05D000079 ORTHO05D000211 7.3e-26 120.6 88 70.5
BolC3t13912H Brassica oleracea HOM05D006914 ORTHO05D008583 9.5e-26 120.2 90 65.6
A03p12500 Brassica napus HOM05D006914 ORTHO05D008583 1.6e-25 119.4 92 63.0
Zm00001eb329210 Zea mays HOM05D006914 ORTHO05D008583 2.8e-25 118.6 90 64.4
C09p49750 Brassica napus HOM05D006914 ORTHO05D008583 3.6e-25 118.2 92 63.0
Os03g0364000 Oryza sativa ssp. japonica HOM05D006914 ORTHO05D008583 3.6e-25 118.2 91 67.0
A02p08150 Brassica napus HOM05D006914 ORTHO05D008583 4.7e-25 117.9 92 64.1
BraA03t10565Z Brassica rapa HOM05D006914 ORTHO05D008583 4.7e-25 117.9 90 63.3
Aa31LG3G13700 Aethionema arabicum HOM05D006914 ORTHO05D008583 1.1e-24 116.7 92 60.9
vmacro06059 Vaccinium macrocarpon HOM05D000079 ORTHO05D000211 1.4e-24 116.3 74 74.3
TAR626G0439 Trochodendron aralioides HOM05D006914 ORTHO05D008583 2.4e-24 115.5 78 73.1
Eucgr.C02509 Eucalyptus grandis HOM05D006914 ORTHO05D008583 8.9e-24 113.6 76 72.4
Haze_19153 Corylus avellana HOM05D006914 ORTHO05D008583 5.8e-23 110.9 76 72.4
PGSC0003DMG400023462 Solanum tuberosum HOM05D006914 ORTHO05D008583 9.9e-23 110.2 76 71.1
CAN.G694.81 Capsicum annuum HOM05D006914 ORTHO05D008583 2.4e-21 105.5 79 67.1
SGA_v2.0_scaffold222G42803 Striga asiatica HOM05D006914 ORTHO05D008583 7.1e-21 104.0 74 70.3
BcaB05g22379 Brassica carinata HOM05D006914 ORTHO05D008583 6.0e-20 100.9 90 58.9
Gohir.A08G236100 Gossypium hirsutum HOM05D006914 ORTHO05D008583 7.8e-20 100.5 68 75.0
AagrBONN_evm.TU.Sc2ySwM_362.2477 Anthoceros agrestis HOM05D006914 ORTHO05D008583 1.3e-19 99.8 93 59.1
PSO782G4630 Papaver somniferum HOM05D006914 ORTHO05D008583 1.7e-19 99.4 95 50.5
BraA02t05889Z Brassica rapa HOM05D006914 ORTHO05D008583 2.3e-19 99.0 79 63.3
Pp3c19_17380 Physcomitrium patens HOM05D006914 ORTHO05D008583 1.1e-18 96.7 92 55.4
CBR_g51779 Chara braunii HOM05D006914 ORTHO05D008583 5.6e-18 94.4 91 56.0
Mapoly0004s0198 Marchantia polymorpha HOM05D006914 ORTHO05D008583 3.6e-17 91.7 75 62.7
SMO304G0019 Selaginella moellendorffii HOM05D006914 ORTHO05D008583 2.4e-16 89.0 78 59.0
Sc13g0007320 Simmondsia chinensis HOM05D006914 ORTHO05D008583 9.0e-16 87.0 64 67.2
Cre12.g554750 Chlamydomonas reinhardtii HOM05D006914 ORTHO05D008583 5.8e-15 84.3 86 50.0
Pp3c17_5060 Physcomitrium patens HOM05D006914 ORTHO05D008583 3.2e-13 78.6 97 52.6
Haze_19154 Corylus avellana HOM05D002983 ORTHO05D003451 5.4e-13 77.8 62 69.4
PRCOL_00002080 Prasinoderma coloniale HOM05D006914 ORTHO05D008583 7.1e-13 77.4 86 50.0
AagrBONN_evm.TU.Sc2ySwM_228.3148 Anthoceros agrestis HOM05D006914 ORTHO05D008583 9.3e-13 77.0 77 53.2
SHI02838 Sapria himalayana HOM05D006914 ORTHO05D008583 7.8e-12 73.9 87 46.0
Aa31LG1G14450 Aethionema arabicum HOM05D006914 ORTHO05D008583 1.9e-10 69.3 75 49.3
BcaC04g19922 Brassica carinata HOM05D006914 ORTHO05D008583 3.3e-10 68.6 52 63.5


User provided reference genes

Program Settings