Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 1.5e-36 155.6 74 100.0
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 3.4e-33 144.4 75 93.3
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 4.4e-33 144.1 74 91.9
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 3.8e-32 141.0 75 89.3
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 4.9e-32 140.6 75 89.3
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 4.9e-32 140.6 74 90.5
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 4.2e-31 137.5 76 89.5
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 4.6e-30 134.0 73 86.3
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 1.7e-29 132.1 73 86.3
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 6.6e-29 130.2 75 84.0
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 1.1e-28 129.4 72 84.7
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 5.6e-28 127.1 73 82.2
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 1.6e-27 125.6 74 82.4
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 1.6e-27 125.6 74 83.8
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 2.8e-27 124.8 75 80.0
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 3.6e-27 124.4 75 77.3
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 1.8e-26 122.1 72 81.9
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 6.9e-26 120.2 81 76.5
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 1.5e-25 119.0 70 81.4
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 1.5e-25 119.0 70 81.4
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 2.0e-25 118.6 72 79.2
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 2.0e-25 118.6 77 77.9
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 2.0e-25 118.6 80 73.8
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 2.6e-25 118.2 70 81.4
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 2.6e-25 118.2 72 76.4
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 3.4e-25 117.9 78 80.8
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 5.8e-25 117.1 76 76.3
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 7.6e-25 116.7 76 75.0
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 9.9e-25 116.3 75 74.7
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 2.2e-24 115.2 73 76.7
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 4.9e-24 114.0 71 74.6
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 4.9e-24 114.0 76 73.7
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 6.4e-24 113.6 74 75.7
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 8.4e-24 113.2 78 78.2
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 8.4e-24 113.2 75 73.3
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 1.1e-23 112.8 70 77.1
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.1e-23 112.8 72 76.4
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 1.1e-23 112.8 67 76.1
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 1.4e-23 112.5 75 72.0
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 1.4e-23 112.5 74 75.7
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 2.4e-23 111.7 72 72.2
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 2.4e-23 111.7 74 74.3
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 7.1e-23 110.2 74 74.3
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 4.6e-22 107.5 69 75.4
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 1.0e-21 106.3 83 68.7
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 3.9e-21 104.4 72 65.3
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 3.9e-21 104.4 72 72.2
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 6.6e-21 103.6 85 65.9
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 8.7e-21 103.2 79 68.4
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 1.9e-20 102.1 74 71.6
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.9e-20 102.1 74 71.6
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.9e-20 102.1 74 71.6
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.9e-20 102.1 74 71.6
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 2.5e-20 101.7 76 71.1
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 5.6e-20 100.5 74 63.5
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 7.3e-20 100.1 87 63.2
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 7.3e-20 100.1 71 70.4
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 7.3e-20 100.1 71 71.8
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 4.8e-19 97.4 72 69.4
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 6.2e-19 97.1 72 65.3
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 8.1e-19 96.7 70 67.1
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 1.1e-18 96.3 84 59.5
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 1.1e-18 96.3 81 59.3
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 1.8e-18 95.5 71 67.6
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 2.4e-18 95.1 82 63.4
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 4.0e-18 94.4 68 66.2
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 1.2e-17 92.8 81 67.9
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 1.2e-17 92.8 84 60.7
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 1.5e-17 92.4 74 62.2
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 2.6e-17 91.7 75 64.0
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 3.4e-17 91.3 78 65.4
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 3.4e-17 91.3 68 67.6
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 3.4e-17 91.3 72 62.5
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 3.4e-17 91.3 69 71.0
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 5.8e-17 90.5 84 65.5
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 5.8e-17 90.5 84 65.5
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 5.8e-17 90.5 76 67.1
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 5.8e-17 90.5 68 69.1
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 7.6e-17 90.1 68 63.2
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 9.9e-17 89.7 70 62.9
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 9.9e-17 89.7 71 64.8
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 9.9e-17 89.7 71 64.8
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 1.3e-16 89.4 78 61.5
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 1.3e-16 89.4 76 63.2
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 1.3e-16 89.4 78 64.1
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 1.7e-16 89.0 84 64.3
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 1.7e-16 89.0 84 64.3
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 1.7e-16 89.0 81 64.2
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 2.2e-16 88.6 84 64.3
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 2.2e-16 88.6 71 63.4
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 2.2e-16 88.6 82 64.6
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 2.2e-16 88.6 71 63.4
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 2.9e-16 88.2 78 62.8
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 2.9e-16 88.2 78 62.8
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 2.9e-16 88.2 78 62.8
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 2.9e-16 88.2 79 65.8
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 2.9e-16 88.2 82 64.6
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 3.8e-16 87.8 78 62.8
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 3.8e-16 87.8 78 62.8
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 3.8e-16 87.8 78 62.8
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 3.8e-16 87.8 73 64.4
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 3.8e-16 87.8 78 62.8
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 3.8e-16 87.8 78 62.8
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 3.8e-16 87.8 78 62.8
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 4.9e-16 87.4 76 65.8
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 4.9e-16 87.4 81 59.3
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 4.9e-16 87.4 82 63.4
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 4.9e-16 87.4 82 63.4
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 4.9e-16 87.4 73 64.4
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 4.9e-16 87.4 82 63.4
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 4.9e-16 87.4 73 64.4
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 4.9e-16 87.4 82 63.4
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 4.9e-16 87.4 82 63.4
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 6.4e-16 87.0 66 63.6
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 8.4e-16 86.7 73 63.0
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 8.4e-16 86.7 73 63.0
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 8.4e-16 86.7 73 63.0
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 1.1e-15 86.3 55 76.4
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 1.4e-15 85.9 85 61.2
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 1.4e-15 85.9 82 62.2
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 1.9e-15 85.5 83 61.4
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 1.9e-15 85.5 83 61.4
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 1.9e-15 85.5 78 61.5
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 2.4e-15 85.1 82 62.2
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 5.4e-15 84.0 81 56.8
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 5.4e-15 84.0 83 61.4
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 5.4e-15 84.0 72 58.3
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 9.3e-15 83.2 65 60.0
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 2.1e-14 82.0 71 62.0
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 1.8e-13 79.0 63 60.3
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 2.3e-13 78.6 73 52.1
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 5.1e-13 77.4 78 52.6
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 6.7e-13 77.0 70 47.1
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 8.7e-13 76.6 61 59.0
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 1.1e-12 76.3 60 60.0
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 1.5e-12 75.9 64 56.2
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 1.5e-12 75.9 63 55.6
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 1.9e-12 75.5 65 53.8
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 3.3e-12 74.7 82 52.4
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 3.3e-12 74.7 65 58.5
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 7.4e-12 73.6 78 51.3
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 2.8e-11 71.6 79 48.1
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 4.8e-11 70.9 64 56.2
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 2.4e-10 68.6 93 44.1
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 6.9e-10 67.0 75 45.3
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 9.0e-10 66.6 82 41.5
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 1.5e-09 65.9 88 45.5
TAR365G0774 Trochodendron aralioides HOM05D004817 ORTHO05D005790 5.8e-09 63.9 85 44.7
HPP92_010590 Vanilla planifolia HOM05D004817 ORTHO05D005790 1.7e-08 62.4 53 64.2
Os01g0288200 Oryza sativa ssp. japonica HOM05D004817 ORTHO05D005790 1.6e-06 55.8 78 39.7


User provided reference genes

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