Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g014920 Pisum sativum HOM05D004942 ORTHO05D005687 0.0e+00 2037.7 1077 100.0
Psat4g122040 Pisum sativum HOM05D004942 ORTHO05D005687 0.0e+00 1488.4 1139 72.5
Medtr8g066290 Medicago truncatula HOM05D004942 ORTHO05D005687 0.0e+00 1466.4 1296 62.7
TPR.G3371 Trifolium pratense HOM05D004942 ORTHO05D005687 0.0e+00 1349.3 1183 63.6
Glyma.16G091700 Glycine max HOM05D004942 ORTHO05D005687 1.5e-311 1072.8 1230 51.5
Lj4g0014066 Lotus japonicus HOM05D004942 ORTHO05D005687 1.7e-298 1029.6 1240 50.1
Lalb_Chr09g0334721 Lupinus albus HOM05D004942 ORTHO05D005687 8.9e-292 1007.3 1330 46.4
Phvul.003G282800 Phaseolus vulgaris HOM05D004942 ORTHO05D005687 6.6e-279 964.5 1284 46.3
Ca_22664_v3 Cicer arietinum L. HOM05D004942 ORTHO05D005687 2.8e-277 959.1 1055 52.4
VMungo0251G2230 Vigna mungo HOM05D004942 ORTHO05D005687 2.4e-276 956.1 1235 47.0
TPR.G31932 Trifolium pratense HOM05D004942 ORTHO05D005687 1.6e-272 943.3 794 64.7
Haze_11879 Corylus avellana HOM05D004942 ORTHO05D005687 5.6e-161 572.8 1377 33.4
Cfa008858 Carpinus fangiana HOM05D004942 ORTHO05D005687 1.6e-160 571.2 1339 33.5
CiPaw.06G093500 Carya illinoinensis HOM05D004942 ORTHO05D005687 8.1e-160 568.9 1202 35.3
QL03p073561 Quercus lobata HOM05D004942 ORTHO05D005687 2.0e-158 564.3 1331 33.7
Prupe.1G290000 Prunus persica HOM05D004942 ORTHO05D005687 1.3e-157 561.6 1289 33.1
Gorai.008G175800 Gossypium raimondii HOM05D004942 ORTHO05D005687 1.9e-156 557.8 1283 33.7
Thecc.02G326800 Theobroma cacao HOM05D004942 ORTHO05D005687 3.2e-156 557.0 1316 32.4
Duzib251G0048 Durio zibethinus HOM05D004942 ORTHO05D005687 1.6e-155 554.7 1317 32.6
GSVIVG01012245001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.1e-148 531.9 1222 32.8
Manes.01G026200 Manihot esculenta HOM05D004942 ORTHO05D005687 2.5e-148 530.8 1270 31.8
MD16G1059100 Malus domestica HOM05D004942 ORTHO05D005687 1.6e-139 501.5 1439 29.7
Potri.008G097700 Populus trichocarpa HOM05D004942 ORTHO05D005687 1.6e-139 501.5 1327 30.7
CANSAT64G2200 Cannabis sativa HOM05D004942 ORTHO05D005687 8.7e-138 495.7 1275 30.9
RcHm_v2.0_Chr4g0437911 Rosa chinensis HOM05D004942 ORTHO05D005687 2.8e-136 490.7 1340 30.8
TWI79G0892 Tripterygium wilfordii HOM05D004942 ORTHO05D005687 1.7e-133 481.5 1190 30.8
Cpa.g.sc1669.1 Carica papaya HOM05D004942 ORTHO05D005687 8.8e-130 469.2 1234 30.5
Ciclev10033741m.g Citrus clementina HOM05D004942 ORTHO05D005687 4.3e-129 466.8 1202 31.9
THA.LOC104822000 Tarenaya hassleriana HOM05D004942 ORTHO05D005687 3.1e-127 460.7 1241 30.5
Gohir.A12G159900 Gossypium hirsutum HOM05D004942 ORTHO05D005687 9.1e-127 459.1 933 35.6
Nn3g17507 Nelumbo nucifera HOM05D004942 ORTHO05D005687 1.0e-125 455.7 1404 29.1
Hma1.2p1_2519F.1_g323790 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 3.2e-124 450.7 1185 30.6
FvH4_4g29660 Fragaria vesca HOM05D004942 ORTHO05D005687 4.7e-123 446.8 1278 29.7
FAN22G2425 Fragaria x ananassa HOM05D004942 ORTHO05D005687 6.1e-123 446.4 1301 29.7
MELO3C012244.2 Cucumis melo HOM05D004942 ORTHO05D005687 1.8e-122 444.9 1256 29.4
Sed0022979 Sechium edule HOM05D004942 ORTHO05D005687 8.8e-122 442.6 1285 28.5
FAN07G2875 Fragaria x ananassa HOM05D004942 ORTHO05D005687 7.4e-121 439.5 1332 29.1
PGR031G3471 Punica granatum HOM05D004942 ORTHO05D005687 2.2e-120 438.0 1256 29.9
ClCG05G022730 Citrullus lanatus HOM05D004942 ORTHO05D005687 2.8e-120 437.6 1252 29.4
AUR62007894 Chenopodium quinoa HOM05D004942 ORTHO05D005687 1.1e-119 435.6 1395 27.1
HanXRQChr17g0568411 Helianthus annuus HOM05D004942 ORTHO05D005687 2.6e-118 431.0 1071 32.0
Aqoxy3G00534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 6.5e-117 426.4 1326 28.3
FAN12G1725 Fragaria x ananassa HOM05D004942 ORTHO05D005687 6.5e-117 426.4 1316 28.8
Cc11_g11760 Coffea canephora HOM05D004942 ORTHO05D005687 1.9e-116 424.9 1257 28.6
AL1G39420 Arabidopsis lyrata HOM05D004942 ORTHO05D005687 1.2e-115 422.2 1238 28.8
Thhalv10006590m.g Eutrema salsugineum HOM05D004942 ORTHO05D005687 2.1e-115 421.4 1246 28.4
Aqoxy4G01534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 3.6e-115 420.6 1321 28.0
Sabra08G0073900 Salix brachista HOM05D004942 ORTHO05D005687 1.4e-114 418.7 1370 28.8
Hund25161 Selenicereus undatus HOM05D004942 ORTHO05D005687 3.0e-114 417.5 1279 28.5
Sc04g0007460 Simmondsia chinensis HOM05D004942 ORTHO05D005687 5.2e-114 416.8 1309 28.0
Gohir.D12G163200 Gossypium hirsutum HOM05D004942 ORTHO05D005687 6.7e-114 416.4 958 33.9
AT1G26330 Arabidopsis thaliana HOM05D004942 ORTHO05D005687 2.6e-113 414.5 1263 28.3
Sp1g22360 Schrenkiella parvula HOM05D004942 ORTHO05D005687 2.2e-112 411.4 1252 27.6
CARHR025590 Cardamine hirsuta HOM05D004942 ORTHO05D005687 8.2e-112 409.5 1251 27.9
Oeu020362.1 Olea europaea HOM05D004942 ORTHO05D005687 7.0e-111 406.4 1152 30.6
BcaC05g26421 Brassica carinata HOM05D004942 ORTHO05D005687 1.6e-110 405.2 1305 27.7
Migut.L01173 Erythranthe guttata HOM05D004942 ORTHO05D005687 3.5e-110 404.1 1083 30.7
C05p24600 Brassica napus HOM05D004942 ORTHO05D005687 1.0e-109 402.5 1307 27.9
BolC5t31196H Brassica oleracea HOM05D004942 ORTHO05D005687 1.0e-109 402.5 1307 27.9
A09p39800 Brassica napus HOM05D004942 ORTHO05D005687 1.1e-108 399.1 1291 27.3
COL.COLO4_27850 Corchorus olitorius HOM05D004942 ORTHO05D005687 1.9e-108 398.3 1109 29.9
AUR62003077 Chenopodium quinoa HOM05D004942 ORTHO05D005687 9.4e-108 396.0 1464 26.0
Carub.0001s2467 Capsella rubella HOM05D004942 ORTHO05D005687 2.1e-107 394.8 1208 27.4
BraA09t39480Z Brassica rapa HOM05D004942 ORTHO05D005687 1.5e-105 388.7 1303 26.9
BcaC05g26635 Brassica carinata HOM05D004942 ORTHO05D005687 2.0e-105 388.3 1300 26.7
EL10Ac6g15023 Beta vulgaris HOM05D004942 ORTHO05D005687 3.4e-105 387.5 1289 26.9
Rhsim09G0125700 Rhododendron simsii HOM05D004942 ORTHO05D005687 3.1e-103 380.9 1364 27.3
PSO017G2640 Papaver somniferum HOM05D004942 ORTHO05D005687 7.7e-102 376.3 1376 26.8
ECA234G0983 Erigeron canadensis HOM05D004942 ORTHO05D005687 1.3e-101 375.6 1164 27.6
PSO478G0521 Papaver somniferum HOM05D004942 ORTHO05D005687 3.2e-100 370.9 1369 26.7
Peaxi162Scf00175g00531 Petunia axillaris HOM05D004942 ORTHO05D005687 1.6e-99 368.6 1150 29.0
Hma1.2p1_0566F.1_g179990 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 4.7e-99 367.1 1163 28.5
Ah.03g138750 Amaranthus hybridus HOM05D004942 ORTHO05D005687 4.0e-98 364.0 1251 27.8
SalBow2G1731 Salvia bowleyana HOM05D004942 ORTHO05D005687 4.5e-94 350.5 1131 28.1
vmacro10440 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 4.3e-92 344.0 496 39.7
Migut.A01205 Erythranthe guttata HOM05D004942 ORTHO05D005687 2.3e-90 338.2 1073 26.7
Os09g0101800 Oryza sativa ssp. japonica HOM05D004942 ORTHO05D005687 3.0e-90 337.8 1149 26.8
SGA_v2.0_scaffold16G07813 Striga asiatica HOM05D004942 ORTHO05D005687 6.8e-90 336.7 1063 28.3
Migut.A01186 Erythranthe guttata HOM05D004942 ORTHO05D005687 8.9e-90 336.3 1074 27.7
Zm00001eb095700 Zea mays HOM05D004942 ORTHO05D005687 2.6e-89 334.7 1169 26.4
TPR.G31934 Trifolium pratense HOM05D004942 ORTHO05D005687 3.4e-89 334.3 458 47.2
MBI16_g37883_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 9.2e-87 326.2 615 35.1
Nitab4.5_0000027g0020 Nicotiana tabacum HOM05D004942 ORTHO05D005687 1.1e-84 319.3 1203 26.2
Lj3A1029T37 Lonicera japonica HOM05D004942 ORTHO05D005687 1.5e-84 318.9 1345 26.3
CsaV3_5G034290 Cucumis sativus L. HOM05D004942 ORTHO05D005687 9.5e-84 316.2 1006 28.5
ATR0827G101 Amborella trichopoda HOM05D004942 ORTHO05D005687 9.8e-81 306.2 433 37.6
Nitab4.5_0003545g0010 Nicotiana tabacum HOM05D004942 ORTHO05D005687 4.1e-79 300.8 1206 26.0
Solyc05g012060.4 Solanum lycopersicum HOM05D004942 ORTHO05D005687 5.4e-79 300.4 918 26.6
Sopen05g006850 Solanum pennellii HOM05D004942 ORTHO05D005687 9.2e-79 299.7 907 26.8
Lsat_1_v5_gn_4_11720 Lactuca sativa HOM05D004942 ORTHO05D005687 3.5e-78 297.7 1051 29.9
TAR629G1003 Trochodendron aralioides HOM05D004942 ORTHO05D005687 1.1e-76 292.7 258 55.8
Dinv34045 Davidia involucrata HOM05D004942 ORTHO05D005687 3.1e-74 284.6 848 31.1
Aa31LG7G8720 Aethionema arabicum HOM05D004942 ORTHO05D005687 1.6e-70 272.3 1210 24.9
MBI16_g47660_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 4.6e-70 270.8 338 43.5
HPP92_000888 Vanilla planifolia HOM05D004942 ORTHO05D005687 5.1e-69 267.3 1354 24.2
Atru.chr11.1596 Acer truncatum HOM05D004942 ORTHO05D005687 4.7e-67 260.8 263 48.7
DCAR_023750 Daucus carota HOM05D004942 ORTHO05D005687 3.5e-62 244.6 1015 24.8
Actinidia28654 Actinidia chinensis HOM05D004942 ORTHO05D005687 4.0e-58 231.1 417 35.3
CSS0007829 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 6.9e-58 230.3 713 28.8
CSS0011617 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 3.4e-57 228.0 713 28.6
CAN.G707.24 Capsicum annuum HOM05D004942 ORTHO05D005687 9.9e-57 226.5 839 25.3
unitig_26.g10284 Utricularia gibba HOM05D004942 ORTHO05D005687 3.2e-55 221.5 1091 24.6
CDE11G1026 Ceratophyllum demersum HOM05D004942 ORTHO05D005687 1.3e-48 199.5 277 35.4
TPR.G8934 Trifolium pratense HOM05D004942 ORTHO05D005687 1.7e-48 199.1 107 84.1
Atru.chr11.1595 Acer truncatum HOM05D004942 ORTHO05D005687 7.1e-39 167.2 552 28.3
Actinidia27212 Actinidia chinensis HOM05D004942 ORTHO05D005687 1.6e-38 166.0 205 46.8
Actinidia28653 Actinidia chinensis HOM05D004942 ORTHO05D005687 2.1e-38 165.6 205 45.9
Gohir.A12G159850 Gossypium hirsutum HOM05D004942 ORTHO05D005687 1.9e-36 159.1 132 59.1
TAR629G1720 Trochodendron aralioides HOM05D004942 ORTHO05D005687 1.9e-36 159.1 349 35.5
SHI10798 Sapria himalayana HOM05D004942 ORTHO05D005687 7.4e-36 157.1 212 42.9
vmacro10441 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 2.9e-32 145.2 227 40.1
SMO269G0037 Selaginella moellendorffii HOM05D004942 ORTHO05D005687 7.9e-30 137.1 1070 20.6
MSTRG.7735 Avicennia marina HOM05D004942 ORTHO05D005687 3.0e-29 135.2 109 60.6
Gohir.D12G163150 Gossypium hirsutum HOM05D004942 ORTHO05D005687 6.7e-29 134.0 106 60.4
AagrBONN_evm.TU.Sc2ySwM_362.1676 Anthoceros agrestis HOM05D004942 ORTHO05D005687 8.7e-29 133.7 421 27.1
SEGI_21482 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 9.6e-28 130.2 140 45.7
Gorai.012G127400 Gossypium raimondii HOM05D004942 ORTHO05D005687 2.8e-27 128.6 112 55.4
Mapoly0001s0391 Marchantia polymorpha HOM05D004942 ORTHO05D005687 5.0e-24 117.9 147 42.9
TPR.G36333 Trifolium pratense HOM05D004942 ORTHO05D005687 6.5e-24 117.5 64 87.5
GSVIVG01026037001 Vitis vinifera HOM05D004942 ORTHO05D005687 5.5e-23 114.4 146 41.1
CSS0006420 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 4.1e-18 98.2 86 55.8
MBI16_g47661_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 1.3e-16 93.2 82 50.0
CSS0004641 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 1.2e-14 86.7 169 33.7
CSS0033973 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 1.0e-13 83.6 81 51.9
Aqoxy4G01498 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 1.5e-12 79.7 83 45.8
GSVIVG01015130001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.5e-12 79.7 58 56.9
GSVIVG01037061001 Vitis vinifera HOM05D004942 ORTHO05D005687 2.2e-11 75.9 61 52.5
GSVIVG01026043001 Vitis vinifera HOM05D004942 ORTHO05D005687 8.2e-11 73.9 59 50.8
MCO07G070 Micromonas commoda HOM05D004942 ORTHO05D005687 5.0e-08 64.7 119 31.1
Eucgr.G02429 Eucalyptus grandis HOM05D004942 ORTHO05D005687 1.1e-07 63.5 70 42.9
TAR629G0168 Trochodendron aralioides HOM05D004942 ORTHO05D005687 2.5e-07 62.4 172 33.1
SHI10799 Sapria himalayana HOM05D004942 ORTHO05D005687 2.7e-06 58.9 99 39.4


User provided reference genes

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