Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 4.6e-219 764.2 378 100.0
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 1.2e-198 696.4 382 89.5
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 1.0e-197 693.3 383 89.8
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 6.5e-189 664.1 380 85.5
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 1.0e-186 656.8 383 83.3
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 1.4e-183 646.4 379 82.8
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 4.4e-177 624.8 377 79.8
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 2.2e-173 612.5 369 80.5
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 2.9e-173 612.1 402 75.1
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 5.0e-173 611.3 376 79.5
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 5.0e-173 611.3 378 79.1
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 4.4e-169 598.2 376 77.7
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 2.2e-168 595.9 376 78.2
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 6.3e-168 594.3 377 76.9
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 1.4e-167 593.2 380 76.8
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 2.4e-167 592.4 348 83.3
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 3.1e-167 592.0 378 77.0
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 1.2e-166 590.1 377 76.9
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 2.0e-166 589.3 376 76.9
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 2.7e-166 589.0 377 76.1
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 7.7e-166 587.4 378 76.7
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 7.7e-166 587.4 379 76.0
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 3.8e-165 585.1 379 75.5
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 3.8e-165 585.1 375 76.0
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 6.6e-165 584.3 377 76.4
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 8.6e-165 583.9 382 76.2
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.1e-164 583.6 379 75.2
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 3.3e-164 582.0 379 76.3
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 7.3e-164 580.9 380 73.9
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.2e-163 580.1 378 74.9
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 1.2e-163 580.1 376 77.1
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.6e-163 579.7 379 74.9
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 2.8e-163 578.9 378 76.7
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 3.6e-163 578.6 399 72.2
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 4.7e-163 578.2 374 76.7
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 4.7e-163 578.2 375 76.8
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 8.0e-163 577.4 320 84.7
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 4.0e-162 575.1 381 74.8
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 6.8e-162 574.3 379 74.7
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 1.2e-161 573.5 377 73.5
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 3.4e-161 572.0 379 73.4
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 3.4e-161 572.0 393 72.3
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 4.4e-161 571.6 372 73.1
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 4.9e-160 568.2 378 74.3
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 4.9e-160 568.2 376 74.5
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 1.4e-159 566.6 378 75.1
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 1.8e-159 566.2 383 72.8
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 3.2e-159 565.5 378 74.3
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 9.2e-159 563.9 377 72.1
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 9.2e-159 563.9 382 74.6
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 1.6e-158 563.1 319 81.5
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 2.0e-158 562.8 376 73.9
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 7.8e-158 560.8 379 71.5
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 1.3e-157 560.1 379 73.4
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 1.3e-157 560.1 380 74.5
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 1.7e-157 559.7 379 71.5
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 1.7e-157 559.7 379 71.2
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 2.3e-157 559.3 376 72.9
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 3.0e-157 558.9 320 81.2
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 3.9e-157 558.5 383 71.3
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 1.6e-155 553.1 404 69.3
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.1e-155 552.7 377 71.9
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 2.8e-155 552.4 376 73.1
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 3.6e-155 552.0 375 71.7
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 8.0e-155 550.8 376 72.1
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 1.0e-154 550.4 377 71.1
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 5.2e-154 548.1 378 72.8
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 2.6e-153 545.8 392 70.2
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 7.5e-153 544.3 375 70.4
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 9.8e-153 543.9 346 76.6
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 2.2e-152 542.7 327 77.4
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 8.3e-152 540.8 307 83.1
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 1.4e-151 540.0 381 71.1
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 1.4e-151 540.0 373 71.0
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 1.4e-151 540.0 373 71.0
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 1.9e-151 539.7 376 69.9
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 2.4e-151 539.3 378 69.0
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 3.2e-151 538.9 383 69.2
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 4.1e-151 538.5 324 78.7
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 7.0e-151 537.7 374 71.4
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 9.2e-151 537.3 385 67.8
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 1.6e-150 536.6 378 69.0
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 1.6e-150 536.6 316 78.8
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 2.0e-150 536.2 355 73.2
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 2.7e-150 535.8 331 77.6
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 3.5e-150 535.4 326 77.9
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 3.5e-150 535.4 352 77.3
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 6.0e-150 534.6 378 70.4
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 6.0e-150 534.6 374 71.1
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 6.0e-150 534.6 374 71.1
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 6.0e-150 534.6 322 78.3
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 1.3e-149 533.5 378 69.3
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 6.6e-149 531.2 318 78.9
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 7.3e-148 527.7 319 76.2
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 1.6e-147 526.6 379 67.8
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 2.1e-147 526.2 374 69.8
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 2.8e-147 525.8 321 74.5
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 3.6e-147 525.4 377 70.3
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 8.1e-147 524.2 379 67.8
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 1.4e-146 523.5 379 67.5
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 1.4e-146 523.5 318 76.7
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 1.8e-146 523.1 315 77.1
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 1.8e-146 523.1 344 72.7
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 2.3e-146 522.7 383 70.0
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 5.2e-146 521.5 375 65.6
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 8.9e-146 520.8 377 67.9
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 5.8e-145 518.1 382 68.8
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 7.5e-145 517.7 375 68.5
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 9.8e-145 517.3 352 75.9
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 1.7e-144 516.5 374 68.4
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 7.1e-143 511.1 373 67.3
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 1.6e-142 510.0 330 73.3
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 3.0e-141 505.8 315 75.9
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 6.6e-141 504.6 317 74.1
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 4.3e-140 501.9 376 67.0
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 4.3e-140 501.9 346 70.8
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 1.6e-139 500.0 316 72.8
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 2.8e-139 499.2 344 68.9
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 3.1e-138 495.7 315 74.9
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 3.1e-138 495.7 304 73.4
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 4.1e-135 485.3 336 67.9
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 2.8e-131 472.6 351 68.4
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 2.8e-131 472.6 384 61.2
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 2.6e-129 466.1 348 69.0
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.1e-127 460.7 323 71.2
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 1.3e-125 453.8 307 67.4
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 1.7e-125 453.4 241 88.4
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 1.5e-124 450.3 381 61.9
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 3.6e-123 445.7 308 69.8
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 1.8e-122 443.4 307 69.7
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 9.9e-121 437.6 293 65.5
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 3.8e-120 435.6 330 61.5
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 6.4e-120 434.9 323 70.6
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 1.4e-114 417.2 265 77.0
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 2.0e-113 413.3 302 64.9
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 1.7e-112 410.2 326 58.3
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 5.3e-106 388.7 285 69.1
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 9.0e-106 387.9 303 59.7
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 5.8e-105 385.2 375 53.1
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 2.2e-104 383.3 298 61.4
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 6.0e-102 375.2 234 71.8
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 4.3e-100 369.0 233 77.3
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.7e-94 349.7 198 81.3
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 4.6e-94 349.0 232 74.6
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 1.0e-93 347.8 196 83.7
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 6.9e-90 335.1 234 66.7
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 2.6e-89 333.2 226 74.3
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 3.9e-77 292.7 205 74.1
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 4.5e-73 279.3 343 45.8
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 1.0e-72 278.1 346 43.9
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 3.6e-70 269.6 219 63.9
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 8.8e-69 265.0 323 44.9
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 3.1e-66 256.5 299 47.2
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 5.3e-66 255.8 309 45.6
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 2.3e-53 213.8 153 71.2
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 9.2e-50 201.8 114 78.1
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 7.5e-44 182.2 181 57.5
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 8.3e-43 178.7 324 37.3
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 1.2e-36 158.3 94 83.0
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 1.2e-36 158.3 131 64.9
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 2.0e-36 157.5 92 83.7
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 9.8e-36 155.2 131 64.1
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 2.2e-35 154.1 92 81.5
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 2.2e-35 154.1 94 80.9
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 8.3e-35 152.1 131 62.6
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 1.1e-31 141.7 97 77.3
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 5.6e-31 139.4 76 82.9
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 3.7e-27 126.7 66 84.8
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 4.9e-27 126.3 73 78.1
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 8.3e-27 125.6 342 28.4
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 2.5e-23 114.0 133 50.4
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 4.3e-23 113.2 92 67.4
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 9.5e-23 112.1 63 77.8
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 1.1e-21 108.6 116 52.6
QL04p088979 Quercus lobata HOM05D003670 ORTHO05D004767 3.5e-17 93.6 99 55.6
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 1.1e-15 88.6 248 30.6
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 1.9e-15 87.8 61 65.6
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 1.9e-15 87.8 51 78.4
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 2.4e-13 80.9 47 80.9
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 3.8e-11 73.6 41 82.9
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 4.2e-10 70.1 46 65.2
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 1.3e-08 65.1 41 70.7
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 1.3e-08 65.1 41 70.7
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 7.3e-07 59.3 33 84.8
Cre01.g008891 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D031137 6.2e-06 56.2 58 39.7


User provided reference genes

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