Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g012040 Pisum sativum HOM05D006956 ORTHO05D008824 1.2e-112 409.8 206 100.0
TPR.G9744 Trifolium pratense HOM05D006956 ORTHO05D008824 8.4e-106 387.1 206 94.2
Medtr2g069340 Medicago truncatula HOM05D006956 ORTHO05D008824 3.2e-105 385.2 206 94.2
Ca_03670_v3 Cicer arietinum L. HOM05D006956 ORTHO05D008824 9.6e-102 373.6 206 90.3
Lj3g0018815 Lotus japonicus HOM05D006956 ORTHO05D008824 5.8e-99 364.4 206 87.4
Glyma.15G256600 Glycine max HOM05D006956 ORTHO05D008824 1.1e-97 360.1 206 87.4
Phvul.005G057800 Phaseolus vulgaris HOM05D006956 ORTHO05D008824 5.4e-97 357.8 206 87.4
Lalb_Chr20g0108711 Lupinus albus HOM05D006956 ORTHO05D008824 5.1e-95 351.3 206 84.5
VMungo1080G0523 Vigna mungo HOM05D006956 ORTHO05D008824 1.9e-94 349.4 206 84.5
Lj3g0016125 Lotus japonicus HOM05D006956 ORTHO05D008824 2.0e-91 339.3 206 81.6
arahy.Tifrunner.gnm1.ann1.JC2BA5 Arachis hypogaea HOM05D006956 ORTHO05D008824 1.9e-89 332.8 203 79.8
QL04p076576 Quercus lobata HOM05D006956 ORTHO05D008824 5.6e-86 321.2 202 76.7
arahy.Tifrunner.gnm1.ann1.82TPB7 Arachis hypogaea HOM05D006956 ORTHO05D008824 1.6e-85 319.7 234 70.1
CSS0020916 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 1.4e-84 316.6 207 75.4
Dinv19614 Davidia involucrata HOM05D006956 ORTHO05D008824 1.4e-84 316.6 202 76.2
COL.COLO4_07377 Corchorus olitorius HOM05D006956 ORTHO05D008824 2.4e-84 315.8 203 77.8
Potri.001G439000 Populus trichocarpa HOM05D006956 ORTHO05D008824 4.0e-84 315.1 197 80.7
TAR362G0399 Trochodendron aralioides HOM05D006956 ORTHO05D008824 9.0e-84 313.9 202 75.7
CiPaw.11G066300 Carya illinoinensis HOM05D006956 ORTHO05D008824 3.4e-83 312.0 202 75.2
Gorai.007G335600 Gossypium raimondii HOM05D006956 ORTHO05D008824 4.5e-83 311.6 204 75.0
Rhsim04G0005600 Rhododendron simsii HOM05D006956 ORTHO05D008824 7.6e-83 310.8 202 75.2
TWI39G0297 Tripterygium wilfordii HOM05D006956 ORTHO05D008824 1.3e-82 310.1 202 75.7
MD10G1203100 Malus domestica HOM05D006956 ORTHO05D008824 1.7e-82 309.7 202 76.2
Haze_03154 Corylus avellana HOM05D006956 ORTHO05D008824 4.9e-82 308.1 202 74.3
Nn7g38051 Nelumbo nucifera HOM05D006956 ORTHO05D008824 4.9e-82 308.1 202 74.8
Sabra16G0296900 Salix brachista HOM05D006956 ORTHO05D008824 4.9e-82 308.1 204 77.0
Solyc09g098220.3 Solanum lycopersicum HOM05D006956 ORTHO05D008824 1.4e-81 306.6 198 72.7
Sopen09g036160 Solanum pennellii HOM05D006956 ORTHO05D008824 1.4e-81 306.6 198 72.7
Thecc.07G151600 Theobroma cacao HOM05D006956 ORTHO05D008824 1.4e-81 306.6 202 75.2
Cfa010806 Carpinus fangiana HOM05D006956 ORTHO05D008824 2.5e-81 305.8 191 77.0
Gohir.A11G291500 Gossypium hirsutum HOM05D006956 ORTHO05D008824 2.5e-81 305.8 202 75.7
Peaxi162Scf00286g00448 Petunia axillaris HOM05D006956 ORTHO05D008824 2.5e-81 305.8 198 72.7
Hma1.2p1_0334F.1_g128720 Hydrangea macrophylla HOM05D006956 ORTHO05D008824 5.5e-81 304.7 202 73.8
vmacro00957 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 1.2e-80 303.5 202 75.2
Manes.06G172400 Manihot esculenta HOM05D006956 ORTHO05D008824 1.6e-80 303.1 204 77.0
Cc05_g16140 Coffea canephora HOM05D006956 ORTHO05D008824 3.5e-80 302.0 205 72.2
CAN.G710.39 Capsicum annuum HOM05D006956 ORTHO05D008824 4.6e-80 301.6 199 71.9
CSS0000379 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 6.0e-80 301.2 209 73.2
Atru.chr9.1519 Acer truncatum HOM05D006956 ORTHO05D008824 1.8e-79 299.7 196 74.5
MELO3C019670.2 Cucumis melo HOM05D006956 ORTHO05D008824 6.7e-79 297.7 202 70.3
CsaV3_6G013760 Cucumis sativus L. HOM05D006956 ORTHO05D008824 6.7e-79 297.7 203 70.4
Prupe.4G139000 Prunus persica HOM05D006956 ORTHO05D008824 1.9e-78 296.2 191 74.9
CANSAT54G1214 Cannabis sativa HOM05D006956 ORTHO05D008824 7.4e-78 294.3 201 74.1
ClCG02G018480 Citrullus lanatus HOM05D006956 ORTHO05D008824 7.4e-78 294.3 221 66.1
BraA09t41455Z Brassica rapa HOM05D006956 ORTHO05D008824 9.7e-78 293.9 203 69.0
Eucgr.A00498 Eucalyptus grandis HOM05D006956 ORTHO05D008824 9.7e-78 293.9 204 69.6
C08p44410 Brassica napus HOM05D006956 ORTHO05D008824 1.3e-77 293.5 192 71.4
MSTRG.13068 Avicennia marina HOM05D006956 ORTHO05D008824 2.1e-77 292.7 197 71.1
BolC8t51982H Brassica oleracea HOM05D006956 ORTHO05D008824 2.1e-77 292.7 192 71.9
A09p60820 Brassica napus HOM05D006956 ORTHO05D008824 4.8e-77 291.6 203 68.5
FvH4_3g15651 Fragaria vesca HOM05D006956 ORTHO05D008824 8.2e-77 290.8 202 69.8
Ciclev10022296m.g Citrus clementina HOM05D006956 ORTHO05D008824 1.4e-76 290.0 203 71.4
Aqoxy1G01495 Aquilegia oxysepala HOM05D006956 ORTHO05D008824 3.1e-76 288.9 197 72.6
Thhalv10008810m.g Eutrema salsugineum HOM05D006956 ORTHO05D008824 5.3e-76 288.1 191 71.2
PGR142G1185 Punica granatum HOM05D006956 ORTHO05D008824 6.9e-76 287.7 191 73.8
RcHm_v2.0_Chr5g0026331 Rosa chinensis HOM05D006956 ORTHO05D008824 9.0e-76 287.3 202 69.3
Migut.H01688 Erythranthe guttata HOM05D006956 ORTHO05D008824 4.5e-75 285.0 202 68.8
AT1G16590 Arabidopsis thaliana HOM05D006956 ORTHO05D008824 1.3e-74 283.5 204 65.2
FAN21G1707 Fragaria x ananassa HOM05D006956 ORTHO05D008824 1.7e-74 283.1 202 67.8
Nitab4.5_0001526g0100 Nicotiana tabacum HOM05D006956 ORTHO05D008824 1.4e-73 280.0 217 63.6
FAN11G3326 Fragaria x ananassa HOM05D006956 ORTHO05D008824 4.2e-73 278.5 219 63.9
THA.LOC104808124 Tarenaya hassleriana HOM05D006956 ORTHO05D008824 1.6e-72 276.6 197 68.0
CARHR017060 Cardamine hirsuta HOM05D006956 ORTHO05D008824 2.1e-72 276.2 196 66.8
SalBow5G4858 Salvia bowleyana HOM05D006956 ORTHO05D008824 2.1e-72 276.2 198 66.7
AL1G28750 Arabidopsis lyrata HOM05D006956 ORTHO05D008824 2.7e-72 275.8 191 69.1
GSVIVG01020406001 Vitis vinifera HOM05D006956 ORTHO05D008824 3.6e-72 275.4 176 76.7
SGA_v2.0_scaffold49G18176 Striga asiatica HOM05D006956 ORTHO05D008824 8.7e-71 270.8 199 66.3
Cfa010808 Carpinus fangiana HOM05D006956 ORTHO05D008824 1.5e-70 270.0 181 72.9
CDE05G1956 Ceratophyllum demersum HOM05D003342 ORTHO05D003861 1.9e-70 269.6 208 68.3
Aa31LG7G1120 Aethionema arabicum HOM05D006956 ORTHO05D008824 3.3e-70 268.9 199 65.8
HPP92_011671 Vanilla planifolia HOM05D006956 ORTHO05D008824 2.4e-68 262.7 194 61.3
Zm00001eb198240 Zea mays HOM05D006956 ORTHO05D008824 6.9e-68 261.2 199 63.8
Carub.0001s1634 Capsella rubella HOM05D006956 ORTHO05D008824 1.2e-67 260.4 198 64.6
AUR62026907 Chenopodium quinoa HOM05D006956 ORTHO05D008824 1.2e-67 260.4 190 66.3
AUR62042418 Chenopodium quinoa HOM05D006956 ORTHO05D008824 2.6e-67 259.2 189 66.1
PSO210G3417 Papaver somniferum HOM05D006956 ORTHO05D008824 1.1e-65 253.8 203 65.5
PSO223G0077 Papaver somniferum HOM05D006956 ORTHO05D008824 2.5e-65 252.7 203 65.5
PGSC0003DMG400014067 Solanum tuberosum HOM05D006956 ORTHO05D008466 9.4e-65 250.8 164 70.7
Sp1g14740 Schrenkiella parvula HOM05D006956 ORTHO05D008824 5.1e-63 245.0 191 62.3
MBI18_g45405_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 9.1e-60 234.2 156 71.8
Sed0013658 Sechium edule HOM05D006956 ORTHO05D008824 1.7e-58 229.9 156 69.2
Sc08g0007560 Simmondsia chinensis HOM05D006956 ORTHO05D008824 3.2e-57 225.7 156 70.5
HanXRQChr08g0231891 Helianthus annuus HOM05D006956 ORTHO05D008824 1.8e-55 219.9 203 56.2
ECA247G3084 Erigeron canadensis HOM05D006956 ORTHO05D008824 6.7e-55 218.0 196 56.1
QL04p076191 Quercus lobata HOM05D006956 ORTHO05D008824 6.1e-48 194.9 124 73.4
QL93p0133_0021 Quercus lobata HOM05D006956 ORTHO05D008824 6.1e-48 194.9 124 73.4
Prupe.4G141800 Prunus persica HOM05D006956 ORTHO05D008824 4.8e-45 185.3 132 69.7
FAN25G3578 Fragaria x ananassa HOM05D006956 ORTHO05D008824 9.1e-44 181.0 138 65.9
RcHm_v2.0_Chr5g0026311 Rosa chinensis HOM05D006956 ORTHO05D008824 2.7e-43 179.5 202 49.0
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 1.3e-42 177.2 201 46.3
Prupe.4G139100 Prunus persica HOM05D006956 ORTHO05D008824 3.2e-41 172.6 164 56.1
Actinidia35432 Actinidia chinensis HOM05D006956 ORTHO05D008824 4.2e-41 172.2 147 62.6
Lsat_1_v5_gn_6_63040 Lactuca sativa HOM05D006956 ORTHO05D008824 1.8e-39 166.8 168 54.2
MD17G1180100 Malus domestica HOM05D006956 ORTHO05D008824 9.8e-38 161.0 126 65.9
Pp3c4_6830 Physcomitrium patens HOM05D006956 ORTHO05D008824 9.8e-38 161.0 189 45.0
SMO340G0149 Selaginella moellendorffii HOM05D006956 ORTHO05D008824 3.7e-37 159.1 188 43.6
Pp3c4_6840 Physcomitrium patens HOM05D006956 ORTHO05D008824 3.8e-34 149.1 187 39.0
SEGI_37897 Sequoiadendron giganteum HOM05D006956 ORTHO05D008824 9.5e-33 144.4 132 53.0
Glyma.08G170300 Glycine max HOM05D006956 ORTHO05D008824 1.8e-31 140.2 161 54.7
vmacro22747 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 1.7e-29 133.7 181 44.8
Mapoly0023s0023 Marchantia polymorpha HOM05D006956 ORTHO05D008824 6.6e-26 121.7 127 44.9
FAN16G1261 Fragaria x ananassa HOM05D006956 ORTHO05D008824 8.6e-26 121.3 116 56.0
vmacro09782 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 4.0e-23 112.5 63 77.8
Potri.011G142501 Populus trichocarpa HOM05D006956 ORTHO05D008824 2.0e-22 110.2 88 64.8
Lju41A37T48 Lonicera japonica HOM05D006956 ORTHO05D008824 5.8e-22 108.6 85 62.4
MBI18_g44288_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 2.9e-21 106.3 76 67.1
ATR0753G159 Amborella trichopoda HOM05D006956 ORTHO05D008824 4.1e-20 102.4 74 67.6
Lalb_Chr25g0284921 Lupinus albus HOM05D006956 ORTHO05D008824 9.2e-20 101.3 159 42.8
Cre13.g575333 Chlamydomonas reinhardtii HOM05D006956 ORTHO05D008824 2.5e-17 93.2 191 32.5
MD05G1220700 Malus domestica HOM05D006956 ORTHO05D008824 3.3e-17 92.8 63 68.3
RcHm_v2.0_Chr5g0031421 Rosa chinensis HOM05D006956 ORTHO05D008824 1.4e-15 87.4 107 51.4
Cpa.g.sc67.70 Carica papaya HOM05D006956 ORTHO05D008824 2.2e-13 80.1 62 64.5
SHI21449 Sapria himalayana HOM05D000257 ORTHO05D008466 3.0e-10 69.7 40 72.5
TPR.G22507 Trifolium pratense HOM05D006956 ORTHO05D008824 1.6e-08 63.9 38 86.8
Lju41A37T47 Lonicera japonica HOM05D006956 ORTHO05D008824 3.1e-07 59.7 44 63.6
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 2.6e-06 56.6 150 25.3


User provided reference genes

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