Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g009440 Pisum sativum HOM05D006869 ORTHO05D008641 7.3e-47 190.3 100 100.0
Medtr2g071640 Medicago truncatula HOM05D006869 ORTHO05D008641 1.3e-30 136.3 88 84.1
TPR.G26622 Trifolium pratense HOM05D006869 ORTHO05D008641 1.1e-26 123.2 87 81.6
Ca_03396_v3 Cicer arietinum L. HOM05D006869 ORTHO05D008641 1.3e-24 116.3 90 75.6
Lj3g0015338 Lotus japonicus HOM05D006869 ORTHO05D008641 6.2e-22 107.5 86 74.4
arahy.Tifrunner.gnm1.ann1.U4TMK5 Arachis hypogaea HOM05D006869 ORTHO05D008641 2.4e-21 105.5 91 65.9
arahy.Tifrunner.gnm1.ann1.4F5UFQ Arachis hypogaea HOM05D006869 ORTHO05D008641 3.1e-21 105.1 91 65.9
arahy.Tifrunner.gnm1.ann1.TLF144 Arachis hypogaea HOM05D006869 ORTHO05D008641 3.1e-21 105.1 91 65.9
Phvul.005G061500 Phaseolus vulgaris HOM05D006869 ORTHO05D008641 2.0e-20 102.4 80 71.2
Glyma.15G248100 Glycine max HOM05D006869 ORTHO05D008641 8.4e-19 97.1 95 62.1
Potri.001G145500 Populus trichocarpa HOM05D006869 ORTHO05D008641 5.4e-18 94.4 73 71.2
Glyma.13G259900 Glycine max HOM05D006869 ORTHO05D008641 1.2e-17 93.2 96 61.5
VMungo1080G1596 Vigna mungo HOM05D006869 ORTHO05D008641 6.0e-17 90.9 62 77.4
Aqoxy3G02480 Aquilegia oxysepala HOM05D006869 ORTHO05D008641 3.0e-16 88.6 57 82.5
CSS0028384 Camellia sinensis var. sinensis HOM05D006869 ORTHO05D008641 3.0e-16 88.6 57 82.5
CSS0030709 Camellia sinensis var. sinensis HOM05D006869 ORTHO05D008641 3.0e-16 88.6 57 82.5
Cpa.g.sc6.427 Carica papaya HOM05D006869 ORTHO05D008641 3.0e-16 88.6 70 72.9
Lalb_Chr25g0285441 Lupinus albus HOM05D006869 ORTHO05D008641 3.0e-16 88.6 95 62.1
TAR375G0341 Trochodendron aralioides HOM05D006869 ORTHO05D008641 5.1e-16 87.8 57 80.7
COL.COLO4_17099 Corchorus olitorius HOM05D006869 ORTHO05D008641 8.7e-16 87.0 75 65.3
Atru.chr6.1763 Acer truncatum HOM05D006869 ORTHO05D008641 1.1e-15 86.7 77 64.9
Actinidia09229 Actinidia chinensis HOM05D002067 ORTHO05D002244 1.9e-15 85.9 71 67.6
Duzib205G1446 Durio zibethinus HOM05D006869 ORTHO05D008641 1.9e-15 85.9 60 73.3
Ciclev10033051m.g Citrus clementina HOM05D006869 ORTHO05D008641 3.3e-15 85.1 66 68.2
PGR042G2539 Punica granatum HOM05D006869 ORTHO05D008641 4.3e-15 84.7 57 78.9
Hund14421 Selenicereus undatus HOM05D006869 ORTHO05D008641 4.3e-15 84.7 73 68.5
TWI15G0987 Tripterygium wilfordii HOM05D006869 ORTHO05D008641 4.3e-15 84.7 57 78.9
CiPaw.12G061200 Carya illinoinensis HOM05D006869 ORTHO05D008641 5.6e-15 84.3 56 80.4
Migut.D00490 Erythranthe guttata HOM05D006869 ORTHO05D008641 5.6e-15 84.3 66 69.7
Thecc.03G232900 Theobroma cacao HOM05D006869 ORTHO05D008641 5.6e-15 84.3 74 64.9
Hma1.2p1_0414F.1_g147870 Hydrangea macrophylla HOM05D006869 ORTHO05D008641 1.3e-14 83.2 57 80.7
Nn1g00590 Nelumbo nucifera HOM05D006869 ORTHO05D008641 1.3e-14 83.2 74 66.2
Sc22g0001440 Simmondsia chinensis HOM05D006869 ORTHO05D008641 1.3e-14 83.2 57 75.4
MSTRG.17527 Avicennia marina HOM05D006869 ORTHO05D008641 1.6e-14 82.8 66 69.7
CiPaw.11G089700 Carya illinoinensis HOM05D006869 ORTHO05D008641 2.1e-14 82.4 66 72.7
PGSC0003DMG400026597 Solanum tuberosum HOM05D006869 ORTHO05D008641 2.8e-14 82.0 68 64.7
Manes.15G174500 Manihot esculenta HOM05D006869 ORTHO05D008641 3.7e-14 81.6 69 68.1
Sed0006536 Sechium edule HOM05D006869 ORTHO05D008641 3.7e-14 81.6 60 70.0
Sopen06g021250 Solanum pennellii HOM05D006869 ORTHO05D008641 3.7e-14 81.6 68 64.7
THA.LOC104798477 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 3.7e-14 81.6 71 71.8
MD06G1029000 Malus domestica HOM05D006869 ORTHO05D008641 8.1e-14 80.5 68 66.2
CsaV3_1G016990 Cucumis sativus L. HOM05D006869 ORTHO05D008641 1.1e-13 80.1 57 71.9
CsaV3_3G049460 Cucumis sativus L. HOM05D006869 ORTHO05D008641 1.1e-13 80.1 57 71.9
Gohir.A09G198300 Gossypium hirsutum HOM05D006869 ORTHO05D008641 1.1e-13 80.1 79 62.0
PSO675G8621 Papaver somniferum HOM05D006869 ORTHO05D008641 1.1e-13 80.1 57 75.4
PSO732G0001 Papaver somniferum HOM05D006869 ORTHO05D008641 1.1e-13 80.1 57 73.7
Sabra01G0114100 Salix brachista HOM05D006869 ORTHO05D008641 1.1e-13 80.1 104 51.0
BcaC05g27275 Brassica carinata HOM05D006869 ORTHO05D008641 1.4e-13 79.7 66 71.2
A09p33790 Brassica napus HOM05D006869 ORTHO05D008641 1.4e-13 79.7 66 71.2
C05p31830 Brassica napus HOM05D006869 ORTHO05D008641 1.4e-13 79.7 66 71.2
BolC5t31911H Brassica oleracea HOM05D006869 ORTHO05D008641 1.4e-13 79.7 66 71.2
BraA09t38929Z Brassica rapa HOM05D006869 ORTHO05D008641 1.4e-13 79.7 66 71.2
DCAR_024975 Daucus carota HOM05D006869 ORTHO05D008641 1.4e-13 79.7 57 73.7
Eucgr.E00305 Eucalyptus grandis HOM05D006869 ORTHO05D008641 1.4e-13 79.7 57 73.7
Actinidia14827 Actinidia chinensis HOM05D006869 ORTHO05D008641 1.8e-13 79.3 57 75.4
PSO832G0919 Papaver somniferum HOM05D006869 ORTHO05D008641 1.8e-13 79.3 57 73.7
BcaB07g32921 Brassica carinata HOM05D006869 ORTHO05D008641 2.4e-13 79.0 68 67.6
HPP92_026375 Vanilla planifolia HOM05D006869 ORTHO05D008641 2.4e-13 79.0 70 58.6
SGA_v2.0_scaffold94G28479 Striga asiatica HOM05D006869 ORTHO05D008641 3.1e-13 78.6 76 57.9
THA.LOC104798593 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 3.1e-13 78.6 71 67.6
THA.LOC104822843 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 3.1e-13 78.6 71 67.6
Prupe.5G042800 Prunus persica HOM05D006869 ORTHO05D008641 4.0e-13 78.2 63 66.7
MELO3C003378.2 Cucumis melo HOM05D006869 ORTHO05D008641 5.3e-13 77.8 57 70.2
CANSAT21G0218 Cannabis sativa HOM05D006869 ORTHO05D008641 1.2e-12 76.6 67 64.2
ECA233G4479 Erigeron canadensis HOM05D006869 ORTHO05D008641 1.2e-12 76.6 66 65.2
Gohir.D09G192900 Gossypium hirsutum HOM05D006869 ORTHO05D008641 1.2e-12 76.6 77 59.7
GSVIVG01013242001 Vitis vinifera HOM05D006869 ORTHO05D008641 1.2e-12 76.6 50 80.0
AT1G32370 Arabidopsis thaliana HOM05D006869 ORTHO05D008641 1.5e-12 76.3 71 64.8
Aa31LG2G13630 Aethionema arabicum HOM05D006869 ORTHO05D008641 2.6e-12 75.5 71 62.0
Sp1g28510 Schrenkiella parvula HOM05D006869 ORTHO05D008641 2.6e-12 75.5 59 69.5
HanXRQChr08g0227941 Helianthus annuus HOM05D006869 ORTHO05D008641 3.4e-12 75.1 66 65.2
RcHm_v2.0_Chr7g0208861 Rosa chinensis HOM05D006869 ORTHO05D008641 3.4e-12 75.1 63 63.5
Carub.0001s3075 Capsella rubella HOM05D006869 ORTHO05D008641 4.5e-12 74.7 59 67.8
Thhalv10009100m.g Eutrema salsugineum HOM05D006869 ORTHO05D008641 5.8e-12 74.3 71 64.8
Zm00001eb024260 Zea mays HOM05D006869 ORTHO05D008641 5.8e-12 74.3 59 67.8
AL1G46570 Arabidopsis lyrata HOM05D006869 ORTHO05D008641 7.6e-12 73.9 71 62.0
FvH4_5g21430 Fragaria vesca HOM05D006869 ORTHO05D008641 1.7e-11 72.8 64 64.1
unitig_746.g26748 Utricularia gibba HOM05D006869 ORTHO05D008641 2.9e-11 72.0 67 64.2
ATR0049G078 Amborella trichopoda HOM05D006869 ORTHO05D008641 3.8e-11 71.6 64 62.5
CARHR031750 Cardamine hirsuta HOM05D006869 ORTHO05D008641 3.8e-11 71.6 59 67.8
SEGI_28722 Sequoiadendron giganteum HOM05D006869 ORTHO05D008641 1.9e-10 69.3 53 71.7
Zm00001eb390630 Zea mays HOM05D006869 ORTHO05D008641 1.9e-10 69.3 61 62.3
BolC5t32616H Brassica oleracea HOM05D006869 ORTHO05D008641 2.5e-10 68.9 70 61.4
Os02g0279600 Oryza sativa ssp. japonica HOM05D006869 ORTHO05D008641 3.2e-10 68.6 53 69.8
BcaC05g27873 Brassica carinata HOM05D006869 ORTHO05D008641 4.2e-10 68.2 66 65.2
C05p38760 Brassica napus HOM05D006869 ORTHO05D008641 4.2e-10 68.2 66 65.2
FAN04G2266 Fragaria x ananassa HOM05D006869 ORTHO05D008641 5.5e-10 67.8 70 60.0
FAN08G2623 Fragaria x ananassa HOM05D006869 ORTHO05D008641 5.5e-10 67.8 70 60.0
FAN13G1368 Fragaria x ananassa HOM05D006869 ORTHO05D008641 5.5e-10 67.8 70 60.0
DCAR_005606 Daucus carota HOM05D006869 ORTHO05D008641 7.1e-10 67.4 88 50.0
ClCG09G012310 Citrullus lanatus HOM05D006869 ORTHO05D008641 9.3e-10 67.0 77 51.9
FAN18G0870 Fragaria x ananassa HOM05D006869 ORTHO05D008641 1.6e-09 66.2 70 58.6
Nitab4.5_0003100g0080 Nicotiana tabacum HOM05D006869 ORTHO05D008641 2.7e-09 65.5 83 50.6
Gorai.006G215800 Gossypium raimondii HOM05D006869 ORTHO05D008641 6.7e-08 60.8 120 41.7


User provided reference genes

Program Settings