Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 8.1e-297 1023.1 554 100.0
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 4.1e-232 808.1 589 79.6
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 9.1e-224 780.4 574 76.5
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 7.2e-221 770.8 590 76.1
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 3.8e-214 748.4 501 77.8
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 1.5e-213 746.5 603 69.3
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 3.3e-213 745.3 508 77.2
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 4.7e-212 741.5 505 76.4
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 4.7e-212 741.5 478 79.3
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 5.2e-211 738.0 429 85.8
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 4.6e-207 724.9 428 84.8
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 7.8e-207 724.2 428 85.7
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 7.3e-205 717.6 560 71.2
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 1.9e-200 703.0 427 82.4
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 4.6e-199 698.4 432 80.3
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 6.0e-199 698.0 427 82.0
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 1.7e-198 696.4 429 80.2
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 3.0e-198 695.7 431 79.6
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 5.1e-198 694.9 411 83.5
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 8.6e-198 694.1 435 80.2
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 4.3e-197 691.8 415 81.2
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 5.6e-197 691.4 427 81.7
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 1.2e-196 690.3 431 79.1
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 2.8e-196 689.1 432 79.6
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 4.7e-196 688.3 425 80.0
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 1.8e-195 686.4 429 79.0
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 1.8e-195 686.4 429 79.3
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 2.3e-195 686.0 436 78.2
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 1.2e-194 683.7 425 80.5
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 1.2e-194 683.7 426 79.6
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 2.0e-194 682.9 429 79.0
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 5.8e-194 681.4 430 78.4
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 8.3e-193 677.6 432 78.2
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 2.4e-192 676.0 411 80.8
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 2.4e-192 676.0 432 78.0
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 3.2e-192 675.6 438 77.9
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 4.1e-192 675.2 426 78.9
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 9.2e-192 674.1 426 79.1
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.0e-190 670.6 432 78.0
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 1.0e-190 670.6 430 77.4
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 1.0e-190 670.6 427 78.2
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 1.0e-190 670.6 421 79.1
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 1.7e-190 669.8 404 79.2
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 1.7e-190 669.8 404 79.2
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 3.0e-190 669.1 436 77.5
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 3.9e-190 668.7 434 77.4
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 6.6e-190 667.9 424 78.1
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 6.6e-190 667.9 408 80.6
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 8.6e-190 667.5 427 78.9
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 1.1e-189 667.2 412 80.1
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 1.5e-189 666.8 426 77.2
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 7.3e-189 664.5 411 79.3
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 1.2e-188 663.7 429 77.4
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 1.6e-188 663.3 436 75.9
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 2.8e-188 662.5 428 76.6
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 3.6e-188 662.1 422 76.5
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 8.1e-188 661.0 429 78.6
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 8.1e-188 661.0 430 76.7
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.8e-187 659.8 424 76.4
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 3.1e-187 659.1 429 76.9
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 3.1e-187 659.1 429 75.5
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 3.1e-187 659.1 425 76.9
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 4.0e-187 658.7 395 81.8
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 4.0e-187 658.7 423 77.1
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 6.8e-187 657.9 435 76.3
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 1.5e-186 656.8 430 75.1
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 1.5e-186 656.8 429 77.4
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 1.5e-186 656.8 427 77.3
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 2.0e-186 656.4 413 78.5
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.0e-186 656.4 414 79.0
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 2.0e-186 656.4 428 76.2
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 3.4e-186 655.6 407 79.4
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 3.4e-186 655.6 426 76.8
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 5.8e-186 654.8 437 74.6
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 9.9e-186 654.1 413 78.7
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 1.3e-185 653.7 426 76.3
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 1.7e-185 653.3 432 76.9
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.2e-185 652.9 413 78.0
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 2.2e-185 652.9 428 76.6
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 2.9e-185 652.5 434 75.6
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 2.9e-185 652.5 426 77.0
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 6.4e-185 651.4 441 73.5
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 6.4e-185 651.4 436 74.8
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 8.4e-185 651.0 424 75.5
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 8.4e-185 651.0 413 77.7
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 1.4e-184 650.2 426 76.8
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 1.9e-184 649.8 417 76.7
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 3.2e-184 649.0 424 74.3
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 5.4e-184 648.3 443 74.3
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 5.4e-184 648.3 426 75.8
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 9.2e-184 647.5 428 75.0
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 2.1e-183 646.4 420 75.7
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 2.7e-183 646.0 425 75.8
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 1.3e-182 643.7 425 76.0
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 1.7e-182 643.3 423 75.2
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 2.3e-182 642.9 412 76.0
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 3.9e-182 642.1 403 78.7
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 1.1e-181 640.6 431 75.4
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 1.1e-181 640.6 427 75.2
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 1.1e-181 640.6 427 74.9
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 2.5e-181 639.4 426 74.6
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 2.5e-181 639.4 420 75.7
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 4.3e-181 638.6 428 74.3
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 5.6e-181 638.3 408 77.0
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 7.3e-181 637.9 417 75.5
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 1.2e-180 637.1 417 75.3
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 2.1e-180 636.3 426 73.9
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 4.7e-180 635.2 426 74.2
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 4.7e-180 635.2 426 74.2
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 6.2e-180 634.8 436 72.9
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 1.8e-179 633.3 426 73.7
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 2.4e-179 632.9 427 73.5
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 4.0e-179 632.1 395 80.3
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 4.0e-179 632.1 426 73.2
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 5.3e-179 631.7 427 73.8
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 5.3e-179 631.7 427 73.8
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 5.3e-179 631.7 427 73.8
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 5.3e-179 631.7 427 73.8
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 5.3e-179 631.7 427 73.8
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 6.9e-179 631.3 426 74.2
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 5.8e-178 628.2 427 72.1
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 7.6e-178 627.9 413 77.0
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 7.6e-178 627.9 404 75.5
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 1.7e-177 626.7 427 73.3
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 1.6e-175 620.2 425 72.9
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 2.1e-175 619.8 410 74.9
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 8.7e-174 614.4 366 80.6
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 1.5e-173 613.6 414 74.9
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 4.3e-173 612.1 401 75.6
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 8.1e-172 607.8 354 83.1
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 3.4e-170 602.4 484 64.0
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 2.7e-167 592.8 426 69.7
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 5.8e-162 575.1 376 74.7
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 3.8e-161 572.4 362 78.7
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 1.2e-159 567.4 341 82.7
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 3.7e-148 529.3 411 65.5
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 5.9e-146 521.9 376 72.3
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 5.9e-146 521.9 381 68.5
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 2.7e-143 513.1 415 64.1
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 3.6e-143 512.7 345 71.3
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 1.8e-134 483.8 375 66.4
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 1.2e-130 471.1 305 73.1
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 2.2e-129 466.8 376 65.2
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 1.0e-97 361.7 209 80.4
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 3.3e-96 356.7 387 49.6
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 1.1e-91 341.7 197 80.2
FAN04G1012 Fragaria x ananassa HOM05D003880 ORTHO05D004959 4.4e-85 319.7 197 80.7
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 1.3e-81 308.1 180 78.9
AagrBONN_evm.TU.Sc2ySwM_344.3442 Anthoceros agrestis HOM05D003880 ORTHO05D004959 1.2e-77 295.0 212 69.8
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 5.4e-75 286.2 159 84.3
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 9.2e-75 285.4 156 85.9
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 9.2e-75 285.4 156 85.9
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 6.9e-62 242.7 360 37.5
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 9.0e-62 242.3 368 39.9
HPP92_027627 Vanilla planifolia HOM05D003880 ORTHO05D004959 2.6e-53 214.2 151 71.5
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 2.7e-50 204.1 331 34.7
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 2.8e-47 194.1 268 39.6
HPP92_019377 Vanilla planifolia HOM05D003880 ORTHO05D004959 4.0e-46 190.3 127 76.4
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 2.5e-40 171.0 188 51.1
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 3.3e-40 170.6 109 74.3
Pp3c4_20480 Physcomitrium patens HOM05D003880 ORTHO05D004959 1.7e-36 158.3 110 67.3
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 3.3e-32 144.1 157 51.0
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 3.7e-31 140.6 88 73.9
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 4.8e-31 140.2 216 36.1
BcaB05g25101 Brassica carinata HOM05D003880 ORTHO05D019999 3.4e-29 134.0 128 53.1
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 5.9e-29 133.3 83 72.3
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 3.8e-28 130.6 83 69.9
Oeu021226.1 Olea europaea HOM05D003880 ORTHO05D019999 1.2e-26 125.6 99 61.6
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 3.2e-19 100.9 113 47.8
BcaB07g33153 Brassica carinata HOM05D003880 ORTHO05D019999 3.6e-18 97.4 98 53.1
BcaB02g09679 Brassica carinata HOM05D003880 ORTHO05D019999 1.4e-14 85.5 90 51.1
PRCOL_00005076 Prasinoderma coloniale HOM05D003880 ORTHO05D333288 3.1e-14 84.3 175 34.9
CAN.G308.60 Capsicum annuum HOM05D003880 ORTHO05D000314 1.9e-11 75.1 111 40.5
Lsat_1_v5_gn_1_10160 Lactuca sativa HOM05D003880 ORTHO05D019999 7.2e-11 73.2 43 79.1
Oeu004742.1 Olea europaea HOM05D003880 ORTHO05D004959 4.0e-09 67.4 55 63.6
COL.COLO4_03399 Corchorus olitorius HOM05D003880 ORTHO05D019999 2.4e-06 58.2 32 78.1


User provided reference genes

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