Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s97g0080 Pisum sativum HOM05D004948 ORTHO05D005824 2.7e-92 342.0 181 100.0
TPR.G33862 Trifolium pratense HOM05D004948 ORTHO05D005824 6.9e-80 300.8 181 85.1
Ca_16670_v3 Cicer arietinum L. HOM05D004948 ORTHO05D005824 3.7e-73 278.5 183 83.1
Medtr3g090670 Medicago truncatula HOM05D004948 ORTHO05D005824 2.1e-68 262.7 153 88.2
Lj1g0003063 Lotus japonicus HOM05D004948 ORTHO05D005824 4.7e-68 261.5 180 77.8
Glyma.04G238900 Glycine max HOM05D004948 ORTHO05D005824 5.9e-63 244.6 167 79.6
Glyma.06G124800 Glycine max HOM05D004948 ORTHO05D005824 5.9e-63 244.6 177 76.8
Phvul.009G135700 Phaseolus vulgaris HOM05D004948 ORTHO05D005824 2.9e-62 242.3 178 74.7
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 1.6e-60 236.5 157 75.8
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 6.1e-60 234.6 155 78.1
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 8.0e-60 234.2 157 75.2
VMungo1309G3087 Vigna mungo HOM05D004948 ORTHO05D005824 1.8e-59 233.0 178 70.2
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 1.2e-58 230.3 155 73.5
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 1.2e-58 230.3 155 76.1
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 2.6e-58 229.2 157 73.2
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 3.3e-58 228.8 155 74.2
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 3.3e-58 228.8 157 75.2
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 4.4e-58 228.4 155 73.5
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 5.7e-58 228.0 157 72.6
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 5.7e-58 228.0 155 75.5
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 9.7e-58 227.3 157 75.2
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 1.3e-57 226.9 157 73.9
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 1.7e-57 226.5 155 76.1
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 2.2e-57 226.1 155 74.8
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 2.2e-57 226.1 155 75.5
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 2.8e-57 225.7 155 72.9
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 3.7e-57 225.3 155 75.5
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 3.7e-57 225.3 156 73.1
arahy.Tifrunner.gnm1.ann1.NIM4HJ Arachis hypogaea HOM05D004948 ORTHO05D005824 4.8e-57 224.9 183 66.7
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 4.8e-57 224.9 155 73.5
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 4.8e-57 224.9 155 73.5
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 6.3e-57 224.6 156 72.4
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 6.3e-57 224.6 157 74.5
Lalb_Chr08g0240671 Lupinus albus HOM05D004948 ORTHO05D005824 8.3e-57 224.2 157 77.7
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 8.3e-57 224.2 157 72.6
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 2.4e-56 222.6 155 71.6
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 2.4e-56 222.6 156 71.8
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 3.1e-56 222.2 157 73.2
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 3.1e-56 222.2 155 72.3
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 4.1e-56 221.9 156 72.4
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 4.1e-56 221.9 154 72.1
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 5.3e-56 221.5 155 72.3
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 5.3e-56 221.5 157 72.6
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 7.0e-56 221.1 155 74.2
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.2e-55 220.3 197 60.9
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.2e-55 220.3 157 72.6
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.6e-55 219.9 157 69.4
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 1.6e-55 219.9 155 71.6
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 2.0e-55 219.5 157 72.6
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 2.0e-55 219.5 155 71.6
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 2.0e-55 219.5 155 71.0
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 2.7e-55 219.2 157 73.2
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.7e-55 219.2 157 72.0
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.7e-55 219.2 157 72.0
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 2.7e-55 219.2 155 71.6
Cc02_g01980 Coffea canephora HOM05D004948 ORTHO05D005824 3.5e-55 218.8 179 65.9
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 5.9e-55 218.0 157 68.8
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 1.3e-54 216.9 155 67.7
Gohir.D09G178100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.3e-54 216.9 173 66.5
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.3e-54 216.9 157 68.2
Gorai.006G200200 Gossypium raimondii HOM05D004948 ORTHO05D005824 1.3e-54 216.9 173 66.5
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 2.9e-54 215.7 155 71.0
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 3.8e-54 215.3 157 71.3
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 5.0e-54 214.9 155 69.7
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 5.0e-54 214.9 155 71.0
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 1.1e-53 213.8 156 70.5
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 1.5e-53 213.4 155 69.0
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 1.5e-53 213.4 155 69.0
CAN.G204.5 Capsicum annuum HOM05D004948 ORTHO05D005824 2.5e-53 212.6 155 69.0
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 2.5e-53 212.6 165 68.5
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 2.5e-53 212.6 156 69.9
Actinidia31860 Actinidia chinensis HOM05D004948 ORTHO05D005824 3.2e-53 212.2 177 65.0
arahy.Tifrunner.gnm1.ann1.AMC2P5 Arachis hypogaea HOM05D004948 ORTHO05D005824 3.2e-53 212.2 194 63.4
Gohir.A09G183400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 3.2e-53 212.2 173 64.7
Os01g0621700 Oryza sativa ssp. japonica HOM05D004948 ORTHO05D005824 3.2e-53 212.2 156 68.6
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 3.2e-53 212.2 157 66.9
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 4.2e-53 211.8 155 66.5
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 5.5e-53 211.5 155 67.7
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 5.5e-53 211.5 155 67.7
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 9.4e-53 210.7 145 73.1
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 9.4e-53 210.7 156 67.9
HPP92_024433 Vanilla planifolia HOM05D004948 ORTHO05D005824 1.6e-52 209.9 154 66.2
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 2.1e-52 209.5 157 68.2
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 6.1e-52 208.0 155 66.5
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 2.3e-51 206.1 154 66.2
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 2.3e-51 206.1 145 69.7
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 3.0e-51 205.7 149 70.5
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 4.0e-51 205.3 155 67.7
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 8.8e-51 204.1 155 63.9
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 8.8e-51 204.1 155 63.9
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 8.8e-51 204.1 155 64.5
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 2.0e-50 203.0 155 64.5
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 2.0e-50 203.0 154 63.6
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 3.4e-50 202.2 155 62.6
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 3.4e-50 202.2 155 63.2
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 4.4e-50 201.8 154 63.0
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 4.4e-50 201.8 172 62.8
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 4.4e-50 201.8 145 69.7
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 9.8e-50 200.7 155 61.9
BcaC03g14431 Brassica carinata HOM05D004948 ORTHO05D005824 9.8e-50 200.7 149 65.1
C02p18470 Brassica napus HOM05D004948 ORTHO05D005824 9.8e-50 200.7 149 65.1
BolC2t07987H Brassica oleracea HOM05D004948 ORTHO05D005824 9.8e-50 200.7 149 65.1
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 1.7e-49 199.9 181 60.8
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 1.7e-49 199.9 145 69.0
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 4.8e-49 198.4 155 61.3
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 4.8e-49 198.4 149 63.8
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 4.8e-49 198.4 149 63.8
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 8.3e-49 197.6 157 66.2
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 8.3e-49 197.6 147 66.7
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 1.1e-48 197.2 156 61.5
Zm00001eb432120 Zea mays HOM05D004948 ORTHO05D005824 3.1e-48 195.7 146 67.8
DCAR_014528 Daucus carota HOM05D000121 ORTHO05D005824 7.0e-48 194.5 172 59.3
unitig_747.g21853 Utricularia gibba HOM05D004948 ORTHO05D005824 1.2e-47 193.7 174 62.1
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 2.7e-47 192.6 157 65.0
TWI39G0355 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 4.5e-47 191.8 137 69.3
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 5.9e-47 191.4 158 62.7
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.0e-46 190.7 157 65.6
DCAR_008996 Daucus carota HOM05D002473 ORTHO05D005824 1.5e-45 186.8 151 63.6
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 3.3e-45 185.7 125 76.0
Nitab4.5_0002176g0030 Nicotiana tabacum HOM05D004948 ORTHO05D005824 4.2e-45 185.3 129 71.3
Ah.07g206090 Amaranthus hybridus HOM05D004948 ORTHO05D005824 4.7e-44 181.8 136 64.7
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 6.1e-44 181.4 171 57.9
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 6.1e-44 181.4 171 57.9
Actinidia08617 Actinidia chinensis HOM05D004948 ORTHO05D005824 2.0e-42 176.4 143 67.8
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 2.0e-42 176.4 125 72.0
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 2.6e-42 176.0 125 71.2
CDE04G0161 Ceratophyllum demersum HOM05D004948 ORTHO05D005824 3.4e-42 175.6 157 55.4
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 2.8e-41 172.6 125 68.0
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 3.7e-41 172.2 127 68.5
CSS0002011 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 7.0e-40 167.9 118 70.3
SEGI_09652 Sequoiadendron giganteum HOM05D004948 ORTHO05D005824 3.5e-39 165.6 153 56.2
SHI54648 Sapria himalayana HOM05D004948 ORTHO05D005824 4.5e-39 165.2 151 60.3
SHI54754 Sapria himalayana HOM05D004948 ORTHO05D005824 4.5e-39 165.2 151 60.3
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 1.3e-38 163.7 125 66.4
CSS0008262 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 3.6e-36 155.6 106 73.6
CSS0025713 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 4.7e-36 155.2 106 73.6
Mapoly0143s0028 Marchantia polymorpha HOM05D004948 ORTHO05D005824 1.7e-33 146.7 161 49.1
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 1.2e-31 140.6 145 51.7
AagrBONN_evm.TU.Sc2ySwM_362.1882 Anthoceros agrestis HOM05D004948 ORTHO05D005824 2.0e-31 139.8 155 47.1
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 4.6e-31 138.7 160 45.0
Lj1P1012T60 Lonicera japonica HOM05D004948 ORTHO05D005824 1.7e-30 136.7 108 64.8
CBR_g39340 Chara braunii HOM05D004948 ORTHO05D005824 5.0e-30 135.2 156 46.8
BcaC04g20470 Brassica carinata HOM05D004948 ORTHO05D005824 8.9e-27 124.4 153 45.8
BolC9t57186H Brassica oleracea HOM05D004948 ORTHO05D005824 2.6e-26 122.9 153 45.8
Lalb_Chr23g0271431 Lupinus albus HOM05D004948 ORTHO05D005824 1.1e-24 117.5 168 48.8
C09p43150 Brassica napus HOM05D004948 ORTHO05D005824 2.4e-24 116.3 143 45.5
BcaB08g35692 Brassica carinata HOM05D004948 ORTHO05D005824 5.4e-16 88.6 96 49.0
MCO05G504 Micromonas commoda HOM05D004948 ORTHO05D005824 2.8e-12 76.3 179 28.5


User provided reference genes

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