Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 1.1e-147 526.6 265 100.0
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 5.5e-110 401.4 220 90.5
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 6.3e-106 387.9 219 84.5
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 1.3e-103 380.2 219 84.0
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 1.7e-103 379.8 219 83.1
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 2.5e-102 375.9 221 81.9
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 2.1e-101 372.9 219 79.9
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 1.0e-100 370.5 219 79.5
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 4.0e-100 368.6 219 80.8
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 8.8e-100 367.5 219 79.9
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 9.1e-97 357.5 219 78.1
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 1.3e-95 353.6 219 77.2
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 1.3e-95 353.6 218 76.1
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 4.2e-94 348.6 218 75.2
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 2.3e-92 342.8 218 73.4
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 2.0e-91 339.7 218 73.4
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 5.7e-91 338.2 218 73.4
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 1.3e-90 337.0 218 72.5
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 2.2e-90 336.3 220 72.3
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 3.7e-90 335.5 218 73.4
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 4.9e-90 335.1 218 72.0
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 4.9e-90 335.1 219 71.2
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 4.9e-90 335.1 263 64.6
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 8.3e-90 334.3 218 72.9
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 1.1e-89 334.0 218 73.4
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 1.4e-89 333.6 216 73.1
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 1.4e-89 333.6 218 73.4
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 1.8e-89 333.2 218 72.9
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 2.4e-89 332.8 218 71.6
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.4e-89 332.8 218 71.6
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 3.1e-89 332.4 217 71.9
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 4.1e-89 332.0 217 72.8
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 4.1e-89 332.0 218 71.6
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.6e-88 330.1 218 71.6
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 1.6e-88 330.1 218 72.5
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 2.0e-88 329.7 218 72.0
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 3.5e-88 328.9 218 72.5
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 4.5e-88 328.6 218 71.6
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 4.5e-88 328.6 218 72.0
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 1.0e-87 327.4 218 70.2
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.3e-87 326.2 218 72.5
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 2.9e-87 325.9 218 70.6
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 2.9e-87 325.9 218 67.9
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 8.6e-87 324.3 220 70.5
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 8.6e-87 324.3 220 69.5
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 1.1e-86 323.9 218 69.3
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 2.5e-86 322.8 219 70.8
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.3e-86 322.4 215 73.0
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 4.3e-86 322.0 218 68.3
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 4.3e-86 322.0 218 71.1
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 4.3e-86 322.0 218 70.6
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 5.6e-86 321.6 218 68.8
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 7.3e-86 321.2 218 70.2
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 9.5e-86 320.9 215 72.6
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 1.2e-85 320.5 218 70.6
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 1.2e-85 320.5 218 67.0
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 1.0e-84 317.4 218 70.2
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 1.4e-84 317.0 219 71.2
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 1.4e-84 317.0 219 71.2
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 2.3e-84 316.2 215 72.1
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 3.1e-84 315.8 218 71.1
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 5.2e-84 315.1 213 70.9
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 5.2e-84 315.1 218 66.1
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 5.2e-84 315.1 218 70.6
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 5.2e-84 315.1 218 69.3
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 5.2e-84 315.1 220 69.5
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 6.8e-84 314.7 217 69.6
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 8.9e-84 314.3 218 69.7
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 1.2e-83 313.9 218 66.5
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 1.5e-83 313.5 221 69.2
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 2.6e-83 312.8 223 67.3
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 3.4e-83 312.4 234 65.0
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 5.8e-83 311.6 218 66.5
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 1.3e-82 310.5 218 66.5
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 2.9e-82 309.3 219 67.1
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 2.9e-82 309.3 217 67.7
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 2.9e-82 309.3 223 66.4
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 3.7e-82 308.9 215 69.3
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 1.4e-81 307.0 218 65.6
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 7.0e-81 304.7 218 67.9
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 7.0e-81 304.7 218 66.5
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 1.2e-80 303.9 229 64.2
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 1.2e-80 303.9 218 67.4
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 1.2e-80 303.9 218 64.2
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 1.2e-80 303.9 218 64.2
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 2.0e-80 303.1 219 67.1
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 2.7e-80 302.8 217 65.9
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 7.8e-80 301.2 205 70.2
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 2.3e-79 299.7 218 63.3
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 1.9e-78 296.6 218 62.8
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 1.9e-78 296.6 216 64.8
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 1.9e-78 296.6 219 63.5
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 3.3e-78 295.8 293 53.6
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 1.6e-77 293.5 229 65.5
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 1.3e-74 283.9 219 60.7
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 1.4e-73 280.4 215 61.4
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 8.1e-69 264.6 167 73.7
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 1.5e-67 260.4 218 59.6
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 5.4e-65 251.9 202 64.4
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 1.7e-63 246.9 211 56.9
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 1.5e-62 243.8 211 56.4
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 1.9e-62 243.4 201 57.2
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.5e-62 243.0 218 51.8
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 5.6e-62 241.9 163 69.9
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 9.5e-62 241.1 218 52.8
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 1.6e-61 240.4 218 53.2
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.8e-61 239.6 218 52.8
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 4.7e-61 238.8 218 52.8
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 4.7e-61 238.8 218 51.8
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 6.2e-61 238.4 218 56.0
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 1.1e-60 237.7 218 51.8
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 1.8e-60 236.9 218 51.4
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 1.8e-60 236.9 211 55.0
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 4.0e-60 235.7 218 53.2
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 5.2e-60 235.3 218 52.3
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 8.9e-60 234.6 215 53.0
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 2.6e-59 233.0 218 51.4
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 4.4e-59 232.3 216 51.4
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 4.4e-59 232.3 218 51.8
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 4.4e-59 232.3 218 53.2
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 5.8e-59 231.9 218 51.4
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 9.9e-59 231.1 215 52.1
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 1.3e-58 230.7 218 51.4
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.7e-58 230.3 218 50.9
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.7e-58 230.3 218 50.5
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 1.7e-58 230.3 218 50.0
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.2e-58 229.9 218 49.5
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 2.2e-58 229.9 218 49.5
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 2.2e-58 229.9 218 50.0
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 2.2e-58 229.9 218 50.0
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.2e-58 229.9 218 50.5
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 3.8e-58 229.2 216 50.5
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 3.8e-58 229.2 218 49.5
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 4.9e-58 228.8 218 50.0
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 6.4e-58 228.4 220 50.0
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 6.4e-58 228.4 217 50.7
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 1.1e-57 227.6 219 51.6
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 1.9e-57 226.9 219 51.1
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 5.4e-57 225.3 218 48.2
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.5e-56 222.6 218 48.2
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 1.3e-55 220.7 219 48.4
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 1.5e-54 217.2 219 47.9
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 2.5e-54 216.5 203 51.7
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 6.9e-52 208.4 181 59.7
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 6.9e-52 208.4 219 49.3
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 9.0e-52 208.0 194 51.0
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 9.0e-52 208.0 194 51.0
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 1.5e-51 207.2 199 50.8
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 4.2e-49 199.1 219 47.5
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 4.2e-49 199.1 219 47.5
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 6.0e-48 195.3 188 56.4
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 7.3e-46 188.3 276 38.0
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 5.6e-38 162.2 170 47.1
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 9.0e-36 154.8 150 51.3
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 4.2e-33 146.0 243 36.6
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 5.7e-30 135.6 145 48.3
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 1.7e-26 124.0 149 45.6
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 1.3e-23 114.4 248 31.9
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.6e-21 107.5 133 39.1
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 2.4e-20 103.6 299 28.4
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 2.5e-14 83.6 54 68.5
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 3.7e-13 79.7 57 70.2
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 1.4e-09 67.8 54 50.0
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 1.4e-09 67.8 54 50.0
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 1.2e-08 64.7 54 48.1
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 1.2e-08 64.7 54 48.1


User provided reference genes

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