Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s7112g0120 Pisum sativum HOM05D002965 ORTHO05D010536 8.4e-54 213.4 104 100.0
Psat0s4951g0200 Pisum sativum HOM05D002965 ORTHO05D010812 5.1e-35 151.0 91 86.8
TPR.G28262 Trifolium pratense HOM05D002965 ORTHO05D010536 3.2e-21 105.1 82 62.2
BNapus_Darmor_BZH_scaffold_234p00050 Brassica napus HOM05D002965 ORTHO05D010536 2.8e-17 92.0 82 59.8
BolSC28t60357H Brassica oleracea HOM05D002965 ORTHO05D010536 2.8e-17 92.0 82 59.8
BraSC48t46254Z Brassica rapa HOM05D002965 ORTHO05D010536 2.8e-17 92.0 82 59.8
Aqoxy3G01134 Aquilegia oxysepala HOM05D002965 ORTHO05D010536 2.4e-16 89.0 71 63.4
PGR028G0005 Punica granatum HOM05D002965 ORTHO05D010536 2.4e-16 89.0 62 71.0
PGR069G0002 Punica granatum HOM05D002965 ORTHO05D010536 2.4e-16 89.0 62 71.0
PGR069G0012 Punica granatum HOM05D002965 ORTHO05D010536 2.4e-16 89.0 62 71.0
PGR069G0018 Punica granatum HOM05D002965 ORTHO05D010536 2.4e-16 89.0 62 71.0
PGR071G0002 Punica granatum HOM05D002965 ORTHO05D010536 2.4e-16 89.0 62 71.0
arahy.Tifrunner.gnm1.ann1.8LYJ6L Arachis hypogaea HOM05D004291 ORTHO05D005620 5.3e-16 87.8 78 55.1
arahy.Tifrunner.gnm1.ann1.Y9PUBE Arachis hypogaea HOM05D004291 ORTHO05D005620 5.3e-16 87.8 78 55.1
arahy.Tifrunner.gnm1.ann1.LH5L6M Arachis hypogaea HOM05D002965 ORTHO05D010536 6.9e-16 87.4 78 55.1
Ca_28560_v3 Cicer arietinum L. HOM05D002965 ORTHO05D010536 1.3e-14 83.2 95 46.3
Lj6A7T8 Lonicera japonica HOM05D002965 ORTHO05D010536 2.9e-14 82.0 87 51.7
Gohir.D06G053851 Gossypium hirsutum HOM05D002965 ORTHO05D010536 5.0e-14 81.3 57 70.2
VMungo0251G1451 Vigna mungo HOM05D002965 ORTHO05D010536 5.0e-14 81.3 76 55.3
Potri.007G062262 Populus trichocarpa HOM05D002965 ORTHO05D010536 2.5e-13 79.0 55 70.9
SabraMtG0009900 Salix brachista HOM05D002965 ORTHO05D010536 2.5e-13 79.0 55 70.9
PGSC0003DMG400010573 Solanum tuberosum HOM05D002965 ORTHO05D010536 2.5e-13 79.0 88 50.0
Solyc00g500226.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 3.2e-13 78.6 88 50.0
Solyc00g500262.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 3.2e-13 78.6 88 50.0
Solyc06g074585.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 5.5e-13 77.8 88 50.0
Aa31csc464G20 Aethionema arabicum HOM05D000743 ORTHO05D000580 7.2e-13 77.4 55 70.9
CARHR283260 Cardamine hirsuta HOM05D002965 ORTHO05D010536 7.2e-13 77.4 82 51.2
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 7.2e-13 77.4 48 77.1
Thhalv10023135m.g Eutrema salsugineum HOM05D002965 ORTHO05D010536 9.4e-13 77.0 49 73.5
Solyc00g500351.1 Solanum lycopersicum HOM05D002965 ORTHO05D011254 1.2e-12 76.6 55 65.5
Sopen05g012840 Solanum pennellii HOM05D002965 ORTHO05D010183 1.2e-12 76.6 55 65.5
Hma1.2p1_0290F.1_g114710 Hydrangea macrophylla HOM05D002965 ORTHO05D010536 2.7e-12 75.5 76 51.3
Hma1.2p1_0290F.1_g114715 Hydrangea macrophylla HOM05D002965 ORTHO05D010536 2.7e-12 75.5 76 51.3
AL3G44420 Arabidopsis lyrata HOM05D002965 ORTHO05D010536 3.6e-12 75.1 82 50.0
AT2G07674 Arabidopsis thaliana HOM05D002965 ORTHO05D010536 3.6e-12 75.1 82 50.0
ATMG01010 Arabidopsis thaliana HOM05D002965 ORTHO05D010536 3.6e-12 75.1 82 50.0
Eucgr.I01860 Eucalyptus grandis HOM05D002965 ORTHO05D010536 7.9e-12 73.9 52 69.2
Solyc00g500114.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 7.9e-12 73.9 55 63.6
Glyma.17G186200 Glycine max HOM05D002965 ORTHO05D010536 1.4e-11 73.2 72 54.2
SalBow1G3342 Salvia bowleyana HOM05D002965 ORTHO05D010536 1.8e-11 72.8 51 68.6
ECA003G0005 Erigeron canadensis HOM05D002965 ORTHO05D000580 2.3e-11 72.4 54 66.7
ECA039G0005 Erigeron canadensis HOM05D002965 ORTHO05D010536 2.3e-11 72.4 54 66.7
Gorai.013G137600 Gossypium raimondii HOM05D002965 ORTHO05D010536 3.9e-11 71.6 46 76.1
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 5.1e-11 71.2 67 53.7
EL10Ac5g12181 Beta vulgaris HOM05D002965 ORTHO05D010536 5.1e-11 71.2 59 59.3
HanXRQChr02g0035251 Helianthus annuus HOM05D002965 ORTHO05D010536 3.3e-10 68.6 67 52.2
PGR028G0001 Punica granatum HOM05D002864 ORTHO05D007972 3.3e-10 68.6 55 61.8
Sopen11g024950 Solanum pennellii HOM05D000004 ORTHO05D000002 3.3e-10 68.6 52 61.5
Sopen11g012750 Solanum pennellii HOM05D002660 ORTHO05D003902 5.7e-10 67.8 55 58.2
arahy.Tifrunner.gnm1.ann1.QPLA3G Arachis hypogaea HOM05D005210 ORTHO05D010080 9.7e-10 67.0 41 73.2
HanXRQChr07g0188971 Helianthus annuus HOM05D002965 ORTHO05D010536 9.7e-10 67.0 88 45.5
Solyc11g045430.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 1.7e-09 66.2 61 54.1
BcaC05g26887 Brassica carinata HOM05D002965 ORTHO05D010536 2.8e-09 65.5 63 55.6
CAN.G362.38 Capsicum annuum HOM05D002965 ORTHO05D010994 3.7e-09 65.1 49 61.2
HanXRQMTg0579151 Helianthus annuus HOM05D002965 ORTHO05D010536 6.3e-09 64.3 57 57.9
HanXRQChr10g0297161 Helianthus annuus HOM05D002965 ORTHO05D010536 1.1e-08 63.5 54 57.4
Nitab4.5_0002493g0010 Nicotiana tabacum HOM05D002965 ORTHO05D010536 1.1e-08 63.5 42 69.0
arahy.Tifrunner.gnm1.ann1.5L8EUV Arachis hypogaea HOM05D007099 ORTHO05D009081 1.2e-07 60.1 43 69.8
arahy.Tifrunner.gnm1.ann1.S21A07 Arachis hypogaea HOM05D008923 ORTHO05D011423 1.2e-07 60.1 43 69.8
arahy.Tifrunner.gnm1.ann1.N1QJ6Q Arachis hypogaea HOM05D007099 ORTHO05D009081 8.5e-06 53.9 38 71.1


User provided reference genes

Program Settings