Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 0.0e+00 1159.4 591 100.0
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 1.3e-289 999.2 591 85.4
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 2.0e-285 985.3 591 84.4
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 2.0e-285 985.3 591 85.4
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 5.1e-249 864.4 585 73.8
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 3.1e-246 855.1 585 73.3
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 3.6e-242 841.6 591 71.1
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 6.7e-241 837.4 588 72.6
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 7.7e-237 823.9 573 74.3
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 2.8e-231 805.4 574 70.6
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 1.9e-227 792.7 606 67.0
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 2.6e-224 782.3 598 65.9
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 7.5e-224 780.8 594 66.0
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 5.4e-222 774.6 587 65.8
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 1.6e-221 773.1 578 67.3
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 2.7e-221 772.3 578 67.0
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 1.1e-219 766.9 573 67.0
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 9.4e-219 763.8 591 64.5
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 2.1e-218 762.7 581 66.1
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.9e-212 742.3 592 63.0
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 5.0e-212 741.5 623 62.1
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 5.0e-212 741.5 590 63.7
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 2.5e-211 739.2 598 62.5
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 1.6e-210 736.5 580 64.5
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 2.8e-210 735.7 597 61.5
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 3.6e-210 735.3 597 61.1
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 8.0e-210 734.2 597 61.5
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 1.4e-209 733.4 590 63.4
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 1.4e-209 733.4 615 61.8
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 2.3e-209 732.6 597 61.0
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 3.0e-209 732.3 592 62.3
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 7.5e-208 727.6 592 62.3
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 4.9e-207 724.9 597 61.0
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.4e-206 723.4 592 62.2
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 7.0e-206 721.1 581 63.0
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 2.7e-205 719.2 585 62.7
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 7.8e-205 717.6 597 60.8
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 1.0e-204 717.2 587 61.7
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 2.9e-204 715.7 586 62.1
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 3.9e-204 715.3 513 68.4
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 6.6e-204 714.5 592 61.5
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 1.9e-203 713.0 593 61.7
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 7.3e-203 711.1 597 60.3
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 9.5e-203 710.7 601 61.7
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 8.0e-202 707.6 584 60.6
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 1.4e-201 706.8 584 60.6
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 2.3e-201 706.1 579 60.8
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 3.1e-201 705.7 579 60.4
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 6.8e-201 704.5 584 60.4
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 5.8e-200 701.4 587 59.5
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 9.8e-200 700.7 592 59.6
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 1.3e-199 700.3 584 59.9
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 2.2e-199 699.5 543 64.6
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 2.9e-199 699.1 573 61.8
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 8.3e-199 697.6 592 59.5
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 3.2e-198 695.7 579 60.3
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 7.0e-198 694.5 549 63.8
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 3.5e-197 692.2 517 66.0
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.0e-196 690.6 543 63.0
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 1.7e-196 689.9 576 58.9
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 2.3e-196 689.5 593 59.4
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 4.3e-195 685.3 590 60.3
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 1.2e-194 683.7 590 58.8
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 1.6e-194 683.3 571 60.9
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 3.6e-194 682.2 584 59.2
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 4.7e-194 681.8 779 49.4
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 6.2e-194 681.4 586 59.7
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 1.4e-193 680.2 585 60.2
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 2.0e-192 676.4 584 58.7
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 7.5e-192 674.5 565 60.4
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 1.3e-191 673.7 588 58.7
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 3.2e-190 669.1 600 58.8
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 5.4e-190 668.3 531 62.1
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 6.0e-189 664.8 579 58.7
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 5.6e-187 658.3 513 62.6
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 2.8e-186 656.0 602 57.0
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 2.8e-186 656.0 598 56.9
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 8.1e-186 654.4 601 57.1
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 1.1e-185 654.1 598 56.7
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 3.4e-184 649.0 567 58.0
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 1.7e-183 646.7 580 57.6
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 4.9e-183 645.2 594 57.6
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 1.7e-180 636.7 594 56.9
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 2.1e-178 629.8 512 61.3
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 2.4e-174 616.3 561 56.7
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 1.9e-171 606.7 601 55.7
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 1.3e-170 604.0 533 58.3
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 4.8e-170 602.1 571 56.4
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 3.1e-169 599.4 573 55.7
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 6.9e-169 598.2 573 55.3
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 2.0e-168 596.7 488 59.4
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 3.6e-162 575.9 586 51.9
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 4.9e-159 565.5 611 51.2
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 9.6e-155 551.2 476 60.9
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 4.3e-147 525.8 539 50.5
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 6.3e-138 495.4 356 68.3
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 5.7e-131 472.2 594 45.6
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 1.5e-118 431.0 382 54.7
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 2.6e-115 420.2 545 42.9
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 7.5e-115 418.7 443 49.7
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 2.8e-114 416.8 504 44.8
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 1.0e-111 408.3 303 65.7
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 1.7e-111 407.5 542 42.3
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 8.3e-106 388.7 575 39.3
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 1.0e-100 371.7 331 56.8
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 9.5e-86 322.0 210 79.0
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.9e-78 297.7 281 56.2
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 1.9e-78 297.7 216 69.9
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 7.1e-73 279.3 340 45.3
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 8.6e-71 272.3 295 52.5
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 2.3e-68 264.2 337 41.2
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 4.0e-68 263.5 359 38.2
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 6.8e-68 262.7 291 44.3
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 3.1e-60 237.3 181 68.0
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 4.9e-50 203.4 170 60.6
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.1e-38 165.6 123 61.0
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.8e-36 158.3 115 70.4
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.8e-31 141.7 112 60.7
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 3.3e-30 137.5 258 35.3
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 4.3e-30 137.1 122 54.9
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 3.4e-27 127.5 100 58.0
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 4.5e-27 127.1 102 62.7
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 3.2e-25 120.9 77 70.1
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 7.2e-25 119.8 79 68.4
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 1.2e-24 119.0 77 68.8
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 5.1e-23 113.6 216 33.8
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 6.7e-23 113.2 178 33.7
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 1.3e-21 109.0 103 50.5
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 1.6e-21 108.6 557 21.9
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 2.0e-19 101.7 129 41.9
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 1.9e-17 95.1 71 57.7
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 3.9e-15 87.4 87 48.3
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 2.6e-14 84.7 71 60.6
ECA233G4564 Erigeron canadensis HOM05D005072 ORTHO05D189103 3.3e-14 84.3 473 24.7
Glyma.09G128251 Glycine max HOM05D005072 ORTHO05D006209 2.2e-13 81.6 88 54.5
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 2.4e-12 78.2 58 69.0
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 9.1e-12 76.3 106 40.6
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 2.9e-10 71.2 202 31.2
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 1.4e-09 68.9 238 25.2
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 2.3e-07 61.6 78 41.0
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 6.7e-07 60.1 47 57.4
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 1.5e-06 58.9 156 30.1


User provided reference genes

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