Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 1.9e-192 675.6 340 100.0
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 9.1e-166 587.0 340 89.1
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 8.0e-162 573.9 348 86.5
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 3.8e-148 528.5 350 82.6
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 3.9e-140 501.9 345 76.8
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 7.3e-139 497.7 346 75.4
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 1.0e-137 493.8 346 74.9
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 2.6e-136 489.2 349 76.8
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 5.8e-136 488.0 348 76.4
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 3.7e-135 485.3 350 74.3
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 1.5e-123 446.8 349 67.9
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 6.8e-121 438.0 330 68.8
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 1.6e-117 426.8 346 67.3
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 4.6e-117 425.2 346 68.5
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 1.0e-116 424.1 318 70.8
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 3.9e-116 422.2 350 64.9
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 1.1e-115 420.6 346 67.1
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 6.8e-113 411.4 346 66.5
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 1.2e-112 410.6 278 78.8
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 4.9e-111 405.2 338 66.9
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 1.4e-110 403.7 348 64.7
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.4e-110 403.7 348 64.7
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 1.4e-110 403.7 346 64.7
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 7.1e-110 401.4 337 66.8
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.6e-109 400.2 348 64.4
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 4.6e-109 398.7 345 64.9
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 3.9e-108 395.6 346 63.6
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 3.9e-108 395.6 349 64.5
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.9e-107 393.3 347 64.6
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 1.9e-107 393.3 343 63.8
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 2.5e-107 392.9 338 64.2
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 3.3e-107 392.5 348 62.9
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 4.3e-107 392.1 347 64.6
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 5.6e-107 391.7 349 64.8
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 9.6e-107 391.0 346 64.2
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 1.6e-106 390.2 350 63.4
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 2.8e-106 389.4 348 64.4
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 6.2e-106 388.3 343 63.0
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 6.2e-106 388.3 346 65.0
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.4e-105 387.1 347 64.0
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 5.3e-105 385.2 343 65.0
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 1.5e-104 383.6 346 62.1
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.0e-104 383.3 338 63.9
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.3e-103 380.6 338 63.6
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 3.8e-103 379.0 349 63.9
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 3.8e-103 379.0 342 63.2
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 1.1e-102 377.5 409 56.5
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 1.1e-102 377.5 347 61.7
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 5.4e-102 375.2 349 61.3
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 9.3e-102 374.4 347 61.4
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 1.2e-101 374.0 345 61.2
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 2.1e-101 373.2 346 62.4
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 2.1e-101 373.2 348 60.6
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 4.6e-101 372.1 342 62.0
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 1.0e-100 370.9 342 61.1
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 1.7e-100 370.2 338 60.7
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 2.3e-100 369.8 342 59.9
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 3.0e-100 369.4 347 60.5
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 5.1e-100 368.6 347 61.4
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 6.6e-100 368.2 346 61.3
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 8.7e-100 367.9 348 61.2
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 5.6e-99 365.2 346 61.8
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 1.6e-98 363.6 347 59.7
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 8.1e-98 361.3 327 61.8
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 1.1e-97 360.9 348 59.2
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.4e-97 360.5 388 55.2
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 1.8e-97 360.1 414 53.9
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 6.9e-97 358.2 338 61.5
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.6e-96 356.3 338 61.2
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 5.8e-96 355.1 338 61.2
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 1.3e-95 354.0 345 58.8
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 1.7e-95 353.6 346 59.5
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 8.4e-95 351.3 347 59.7
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 8.4e-95 351.3 347 59.7
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 1.9e-94 350.1 344 59.3
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 1.9e-94 350.1 348 58.6
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 2.4e-94 349.7 348 60.1
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 5.4e-94 348.6 344 58.1
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 5.4e-94 348.6 327 60.9
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 2.7e-93 346.3 345 58.3
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 1.0e-92 344.4 343 58.0
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.8e-92 343.6 351 58.4
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 6.7e-92 341.7 345 59.4
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 1.1e-91 340.9 392 52.3
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 1.5e-91 340.5 334 61.1
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 1.9e-91 340.1 342 58.5
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 3.3e-91 339.3 360 58.9
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.3e-90 337.4 348 58.9
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 2.8e-90 336.3 343 58.3
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 3.7e-90 335.9 342 58.2
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 3.1e-89 332.8 348 56.6
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 4.0e-89 332.4 336 57.4
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 6.9e-89 331.6 291 64.9
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 2.0e-88 330.1 342 57.0
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 2.0e-88 330.1 322 58.1
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 2.0e-88 330.1 341 57.5
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 5.8e-88 328.6 342 57.0
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 7.6e-88 328.2 349 53.9
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 7.6e-88 328.2 324 58.6
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 2.9e-87 326.2 327 56.9
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 3.8e-87 325.9 342 56.1
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 4.9e-87 325.5 323 56.3
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 7.1e-86 321.6 325 56.6
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 2.7e-85 319.7 325 57.8
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 4.6e-85 318.9 323 57.3
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.3e-84 317.4 346 54.6
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 3.0e-84 316.2 343 55.4
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 1.1e-83 314.3 343 53.9
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 2.5e-83 313.2 322 56.5
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 4.3e-83 312.4 345 54.8
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 1.3e-82 310.8 341 52.8
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 2.1e-82 310.1 323 56.3
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 2.1e-82 310.1 322 55.9
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 2.1e-82 310.1 339 57.2
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 1.4e-81 307.4 343 53.6
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 2.4e-81 306.6 339 51.3
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 5.3e-81 305.4 342 55.0
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 6.9e-81 305.1 323 55.7
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 6.9e-81 305.1 342 55.0
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 6.9e-81 305.1 344 51.5
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 1.2e-80 304.3 351 50.1
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 3.4e-80 302.8 342 53.8
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 2.9e-79 299.7 248 67.7
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 6.5e-79 298.5 327 52.3
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 8.4e-79 298.1 266 61.7
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 1.1e-78 297.7 326 53.4
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 1.1e-78 297.7 326 53.4
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 1.1e-78 297.7 357 50.4
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 1.9e-78 297.0 334 53.9
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 1.9e-78 297.0 342 53.5
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 1.9e-78 297.0 334 53.9
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 4.2e-78 295.8 328 54.3
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 5.5e-78 295.4 359 52.9
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 9.3e-78 294.7 353 49.9
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 7.9e-77 291.6 330 54.2
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 3.0e-76 289.7 332 51.2
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 1.6e-74 283.9 356 47.5
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 2.2e-74 283.5 337 49.6
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 1.1e-70 271.2 281 58.0
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 1.9e-70 270.4 336 48.8
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 7.2e-70 268.5 264 60.2
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 2.1e-61 240.4 341 48.7
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 3.6e-61 239.6 204 66.2
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 1.3e-58 231.1 256 53.1
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 4.7e-53 212.6 345 42.0
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 7.0e-41 172.2 351 38.5
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.0e-36 158.3 250 44.4
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 6.8e-36 155.6 324 37.3
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 7.5e-35 152.1 401 32.7
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 1.5e-27 127.9 149 53.0
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 6.2e-21 105.9 156 42.9
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 4.6e-16 89.7 88 56.8
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 1.3e-15 88.2 248 30.6
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.7e-10 71.2 147 34.7
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 2.4e-09 67.4 197 32.0
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 7.1e-09 65.9 265 27.5
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 3.5e-08 63.5 343 25.4
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 2.3e-07 60.8 143 30.8
AagrBONN_evm.TU.Sc2ySwM_117.2972 Anthoceros agrestis HOM05D034434 ORTHO05D019609 2.5e-06 57.4 346 21.7


User provided reference genes

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