Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s5799g0040 Pisum sativum HOM05D005841 ORTHO05D007132 1.6e-55 219.2 110 100.0
Psat3g094640 Pisum sativum HOM05D004524 ORTHO05D005477 1.0e-25 120.2 64 89.1
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 6.2e-15 84.3 73 63.0
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 2.4e-14 82.4 73 63.0
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 4.0e-14 81.6 55 76.4
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 9.0e-14 80.5 73 60.3
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 1.2e-13 80.1 55 74.5
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 4.4e-13 78.2 72 62.5
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 5.8e-13 77.8 72 62.5
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 1.3e-12 76.6 72 56.9
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 1.3e-12 76.6 72 55.6
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 1.7e-12 76.3 72 62.5
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 2.9e-12 75.5 73 61.6
Ah.15g098060 Amaranthus hybridus HOM05D005841 ORTHO05D007132 3.8e-12 75.1 72 56.9
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 3.8e-12 75.1 72 56.9
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 4.9e-12 74.7 55 72.7
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 8.4e-12 73.9 73 58.9
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 1.4e-11 73.2 72 58.3
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 1.4e-11 73.2 70 52.9
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 1.4e-11 73.2 72 52.8
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 1.9e-11 72.8 55 70.9
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.9e-11 72.8 55 70.9
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.9e-11 72.8 55 70.9
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.9e-11 72.8 55 70.9
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 1.9e-11 72.8 53 67.9
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 1.9e-11 72.8 62 64.5
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 2.4e-11 72.4 70 55.7
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 2.4e-11 72.4 61 60.7
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 3.2e-11 72.0 72 52.8
CSS0023245 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 3.2e-11 72.0 72 52.8
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 4.2e-11 71.6 55 67.3
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 4.2e-11 71.6 67 59.7
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 4.2e-11 71.6 70 54.3
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 4.2e-11 71.6 72 55.6
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 5.4e-11 71.2 71 57.7
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 5.4e-11 71.2 72 51.4
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 7.1e-11 70.9 72 51.4
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 7.1e-11 70.9 53 67.9
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 7.1e-11 70.9 53 67.9
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 7.1e-11 70.9 59 66.1
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 7.1e-11 70.9 72 51.4
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 7.1e-11 70.9 72 58.3
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 7.1e-11 70.9 72 51.4
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 7.1e-11 70.9 72 52.8
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 7.1e-11 70.9 72 51.4
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 9.3e-11 70.5 71 57.7
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 9.3e-11 70.5 72 51.4
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 9.3e-11 70.5 72 52.8
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 9.3e-11 70.5 72 54.2
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 1.6e-10 69.7 50 72.0
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 1.6e-10 69.7 50 72.0
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 1.6e-10 69.7 71 57.7
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 1.6e-10 69.7 72 50.0
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 1.6e-10 69.7 72 51.4
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 1.6e-10 69.7 56 69.6
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 1.6e-10 69.7 50 70.0
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 1.6e-10 69.7 50 68.0
ATR0068G039 Amborella trichopoda HOM05D005841 ORTHO05D007132 2.1e-10 69.3 74 52.7
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 2.1e-10 69.3 72 48.6
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 2.1e-10 69.3 53 66.0
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 2.1e-10 69.3 53 66.0
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 2.1e-10 69.3 50 72.0
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 2.1e-10 69.3 53 66.0
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 2.1e-10 69.3 50 66.0
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 2.1e-10 69.3 50 70.0
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 2.1e-10 69.3 72 51.4
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 2.1e-10 69.3 72 48.6
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 2.7e-10 68.9 70 51.4
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 2.7e-10 68.9 55 65.5
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 2.7e-10 68.9 72 51.4
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 3.5e-10 68.6 46 76.1
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 3.5e-10 68.6 71 56.3
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 3.5e-10 68.6 55 67.3
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.5e-10 68.6 55 67.3
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 3.5e-10 68.6 72 48.6
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 4.6e-10 68.2 71 56.3
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 4.6e-10 68.2 72 50.0
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 4.6e-10 68.2 61 55.7
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 6.0e-10 67.8 71 56.3
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 6.0e-10 67.8 72 48.6
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 6.0e-10 67.8 72 50.0
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 6.0e-10 67.8 72 50.0
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 6.0e-10 67.8 55 61.8
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 6.0e-10 67.8 59 55.9
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 7.8e-10 67.4 72 51.4
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 7.8e-10 67.4 50 66.0
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 7.8e-10 67.4 70 51.4
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 7.8e-10 67.4 50 66.0
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 7.8e-10 67.4 61 52.5
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 1.0e-09 67.0 70 50.0
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 1.3e-09 66.6 72 52.8
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 1.3e-09 66.6 55 61.8
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 1.3e-09 66.6 55 61.8
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 1.7e-09 66.2 79 50.6
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 2.3e-09 65.9 59 55.9
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 2.3e-09 65.9 59 55.9
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 2.3e-09 65.9 59 55.9
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 3.0e-09 65.5 54 63.0
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 3.9e-09 65.1 55 63.6
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 3.9e-09 65.1 44 68.2
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 3.9e-09 65.1 72 48.6
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 3.9e-09 65.1 55 58.2
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 6.6e-09 64.3 50 64.0
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 6.6e-09 64.3 55 58.2
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 6.6e-09 64.3 55 58.2
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 6.6e-09 64.3 55 58.2
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 8.7e-09 63.9 47 61.7
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 1.1e-08 63.5 59 52.5
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 1.5e-08 63.2 65 58.5
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 1.9e-08 62.8 46 63.0
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 1.9e-08 62.8 58 56.9
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 1.9e-08 62.8 72 44.4
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 2.5e-08 62.4 72 44.4
Gohir.D10G200101 Gossypium hirsutum HOM05D005841 ORTHO05D007132 3.3e-08 62.0 50 56.0
AUR62041645 Chenopodium quinoa HOM05D005841 ORTHO05D007132 4.3e-08 61.6 72 51.4
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 1.3e-07 60.1 53 56.6
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 6.2e-07 57.8 42 64.3
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 1.4e-06 56.6 70 45.7
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 2.4e-06 55.8 44 59.1
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 4.0e-06 55.1 56 55.4


User provided reference genes

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