Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s5568g0040 Pisum sativum HOM05D036547 ORTHO05D022363 3.9e-207 724.5 360 100.0
Psat0s969g0040 Pisum sativum HOM05D036547 ORTHO05D022363 2.2e-125 453.0 228 96.9
Psat2g054960 Pisum sativum HOM05D000139 ORTHO05D022363 1.5e-54 217.6 271 46.5
TPR.G5217 Trifolium pratense HOM05D036547 ORTHO05D022363 3.9e-50 203.0 203 51.2
Ca_05673_v3 Cicer arietinum L. HOM05D000139 ORTHO05D022363 1.2e-35 154.8 140 50.7
Ca_05667_v3 Cicer arietinum L. HOM05D000139 ORTHO05D022363 7.7e-22 109.0 283 30.4
arahy.Tifrunner.gnm1.ann1.624Y80 Arachis hypogaea HOM05D000139 ORTHO05D010351 3.6e-11 73.6 122 37.7
arahy.Tifrunner.gnm1.ann1.MWQM2H Arachis hypogaea HOM05D000139 ORTHO05D010351 4.7e-11 73.2 170 31.2
TPR.G27407 Trifolium pratense HOM05D000139 ORTHO05D010351 6.1e-11 72.8 230 29.6
arahy.Tifrunner.gnm1.ann1.6DK79V Arachis hypogaea HOM05D000139 ORTHO05D010351 5.2e-10 69.7 223 29.1
CANSAT54G2103 Cannabis sativa HOM05D000139 ORTHO05D000103 2.0e-09 67.8 110 37.3
Lalb_Chr17g0345331 Lupinus albus HOM05D000139 ORTHO05D000103 2.0e-09 67.8 84 41.7
Lalb_Chr04g0251951 Lupinus albus HOM05D000139 ORTHO05D000103 2.6e-09 67.4 91 41.8
Medtr5g073450 Medicago truncatula HOM05D000139 ORTHO05D000103 3.4e-09 67.0 93 38.7
PGR119G0232 Punica granatum HOM05D000139 ORTHO05D000103 3.4e-09 67.0 91 40.7
Ciclev10028037m.g Citrus clementina HOM05D000139 ORTHO05D000103 4.4e-09 66.6 109 34.9
MELO3C020519.2 Cucumis melo HOM05D000139 ORTHO05D000103 4.4e-09 66.6 109 36.7
CsaV3_1G036490 Cucumis sativus L. HOM05D000139 ORTHO05D000103 4.4e-09 66.6 109 36.7
arahy.Tifrunner.gnm1.ann1.DF7IVU Arachis hypogaea HOM05D000139 ORTHO05D010351 5.7e-09 66.2 227 30.0
Dinv28698 Davidia involucrata HOM05D000139 ORTHO05D000103 5.7e-09 66.2 109 37.6
QL01p026188 Quercus lobata HOM05D000139 ORTHO05D000103 5.7e-09 66.2 109 37.6
C03p14350 Brassica napus HOM05D000139 ORTHO05D000103 9.8e-09 65.5 111 36.0
Manes.02G217200 Manihot esculenta HOM05D000139 ORTHO05D000103 9.8e-09 65.5 91 39.6
Thecc.09G358100 Theobroma cacao HOM05D000139 ORTHO05D000103 9.8e-09 65.5 109 36.7
Atru.chr3.4116 Acer truncatum HOM05D000139 ORTHO05D000103 1.3e-08 65.1 109 35.8
arahy.Tifrunner.gnm1.ann1.9GG7V0 Arachis hypogaea HOM05D000139 ORTHO05D000103 1.3e-08 65.1 109 36.7
arahy.Tifrunner.gnm1.ann1.X9R2CE Arachis hypogaea HOM05D000139 ORTHO05D000103 1.3e-08 65.1 109 36.7
BolC3t13879H Brassica oleracea HOM05D000139 ORTHO05D000103 1.3e-08 65.1 111 36.0
BraA03t10535Z Brassica rapa HOM05D000139 ORTHO05D000103 1.3e-08 65.1 111 36.0
CiPaw.13G068900 Carya illinoinensis HOM05D000139 ORTHO05D000103 1.3e-08 65.1 126 35.7
Ca_05656_v3 Cicer arietinum L. HOM05D000139 ORTHO05D000103 1.3e-08 65.1 91 40.7
ClCG03G000430 Citrullus lanatus HOM05D000139 ORTHO05D000103 1.3e-08 65.1 109 35.8
COL.COLO4_11157 Corchorus olitorius HOM05D000139 ORTHO05D000103 1.3e-08 65.1 91 39.6
Dinv09675 Davidia involucrata HOM05D000139 ORTHO05D000103 1.3e-08 65.1 109 36.7
Glyma.02G231900 Glycine max HOM05D000139 ORTHO05D010351 1.3e-08 65.1 89 38.2
GSVIVG01024631001 Vitis vinifera HOM05D000139 ORTHO05D000103 1.3e-08 65.1 109 35.8
MSTRG.18552 Avicennia marina HOM05D000139 ORTHO05D000103 1.7e-08 64.7 109 33.9
Cpa.g.sc2.351 Carica papaya HOM05D000139 ORTHO05D000103 1.7e-08 64.7 109 36.7
Duzib168G1779 Durio zibethinus HOM05D000139 ORTHO05D000103 1.7e-08 64.7 109 36.7
Gohir.D03G143200 Gossypium hirsutum HOM05D000139 ORTHO05D000103 1.7e-08 64.7 109 35.8
Gorai.003G150400 Gossypium raimondii HOM05D000139 ORTHO05D000103 1.7e-08 64.7 109 35.8
Manes.18G145487 Manihot esculenta HOM05D000139 ORTHO05D000103 1.7e-08 64.7 91 40.7
Psat5g154400 Pisum sativum HOM05D000139 ORTHO05D000103 1.7e-08 64.7 93 37.6
TWI75G1510 Tripterygium wilfordii HOM05D000139 ORTHO05D000103 1.7e-08 64.7 107 38.3
FvH4_3g39790 Fragaria vesca HOM05D000139 ORTHO05D000103 2.2e-08 64.3 91 40.7
FAN11G2669 Fragaria x ananassa HOM05D000139 ORTHO05D000103 2.2e-08 64.3 91 40.7
FAN16G3339 Fragaria x ananassa HOM05D000139 ORTHO05D000103 2.2e-08 64.3 91 40.7
FAN25G3566 Fragaria x ananassa HOM05D000139 ORTHO05D000103 2.2e-08 64.3 91 40.7
Glyma.02G232100 Glycine max HOM05D000139 ORTHO05D000103 2.2e-08 64.3 106 35.8
MBI15_g15937_MAGBIO Magnolia biondii HOM05D000139 ORTHO05D000103 2.2e-08 64.3 89 39.3
RcHm_v2.0_Chr5g0071681 Rosa chinensis HOM05D000139 ORTHO05D000103 2.2e-08 64.3 91 40.7
Lj1P126T10 Lonicera japonica HOM05D000139 ORTHO05D000103 2.8e-08 63.9 109 34.9
Lalb_Chr17g0345401 Lupinus albus HOM05D000139 ORTHO05D000103 2.8e-08 63.9 109 36.7
Oeu019271.1 Olea europaea HOM05D000139 ORTHO05D000103 2.8e-08 63.9 109 35.8
BcaB01g04522 Brassica carinata HOM05D000139 ORTHO05D000103 3.7e-08 63.5 111 35.1
Gohir.A03G025300 Gossypium hirsutum HOM05D000139 ORTHO05D000103 3.7e-08 63.5 109 34.9
Prupe.6G048000 Prunus persica HOM05D000139 ORTHO05D000103 3.7e-08 63.5 91 39.6
THA.LOC104799384 Tarenaya hassleriana HOM05D000139 ORTHO05D000103 3.7e-08 63.5 111 35.1
Medtr3g031130 Medicago truncatula HOM05D000139 ORTHO05D000103 4.8e-08 63.2 93 36.6
Psat2g054720 Pisum sativum HOM05D000139 ORTHO05D000103 4.8e-08 63.2 93 36.6
AL8G34620 Arabidopsis lyrata HOM05D000139 ORTHO05D000103 6.3e-08 62.8 111 35.1
AT5G58430 Arabidopsis thaliana HOM05D000139 ORTHO05D000103 6.3e-08 62.8 111 35.1
MSTRG.17894 Avicennia marina HOM05D000139 ORTHO05D000103 6.3e-08 62.8 109 35.8
LjContig00141g0015443 Lotus japonicus HOM05D000139 ORTHO05D000103 6.3e-08 62.8 109 36.7
Phvul.008G252200 Phaseolus vulgaris HOM05D000139 ORTHO05D000103 6.3e-08 62.8 109 34.9
MSTRG.21241 Avicennia marina HOM05D000139 ORTHO05D000103 8.3e-08 62.4 115 35.7
Carub.0008s1902 Capsella rubella HOM05D000139 ORTHO05D000103 8.3e-08 62.4 111 34.2
Ca_15011_v3 Cicer arietinum L. HOM05D000139 ORTHO05D000103 8.3e-08 62.4 93 37.6
Ca_30360_v3 Cicer arietinum L. HOM05D000139 ORTHO05D000103 8.3e-08 62.4 93 37.6
MD03G1056800 Malus domestica HOM05D000139 ORTHO05D000103 8.3e-08 62.4 91 37.4
Sed0018712 Sechium edule HOM05D000139 ORTHO05D000103 8.3e-08 62.4 109 33.9
TPR.G40854 Trifolium pratense HOM05D000139 ORTHO05D000103 8.3e-08 62.4 172 27.9
vmacro02914 Vaccinium macrocarpon HOM05D000139 ORTHO05D000103 8.3e-08 62.4 109 34.9
MSTRG.12690 Avicennia marina HOM05D000139 ORTHO05D000103 1.1e-07 62.0 109 33.9
CAN.G369.1 Capsicum annuum HOM05D000139 ORTHO05D000103 1.1e-07 62.0 92 35.9
DCAR_018216 Daucus carota HOM05D000139 ORTHO05D000103 1.1e-07 62.0 91 37.4
DCAR_018232 Daucus carota HOM05D000139 ORTHO05D000103 1.1e-07 62.0 91 37.4
Glyma.14G199200 Glycine max HOM05D000139 ORTHO05D000103 1.1e-07 62.0 91 37.4
PSO349G0061 Papaver somniferum HOM05D000139 ORTHO05D000103 1.1e-07 62.0 110 33.6
PSO765G0115 Papaver somniferum HOM05D000139 ORTHO05D000103 1.1e-07 62.0 110 33.6
Sopen08g019740 Solanum pennellii HOM05D000139 ORTHO05D000103 1.1e-07 62.0 92 35.9
PGSC0003DMG400025456 Solanum tuberosum HOM05D000139 ORTHO05D000103 1.1e-07 62.0 92 35.9
TPR.G25703 Trifolium pratense HOM05D000139 ORTHO05D000103 1.1e-07 62.0 93 35.5
Aa31LG11G210 Aethionema arabicum HOM05D000139 ORTHO05D000103 1.4e-07 61.6 111 34.2
arahy.Tifrunner.gnm1.ann1.B7RGGF Arachis hypogaea HOM05D000139 ORTHO05D000103 1.4e-07 61.6 201 24.4
Cfa011781 Carpinus fangiana HOM05D000139 ORTHO05D000103 1.4e-07 61.6 110 37.3
Duzib170G1135 Durio zibethinus HOM05D000139 ORTHO05D000103 1.4e-07 61.6 109 34.9
Glyma.14G199700 Glycine max HOM05D000139 ORTHO05D010351 1.4e-07 61.6 222 28.4
Sp6g20120 Schrenkiella parvula HOM05D000139 ORTHO05D000103 1.4e-07 61.6 111 34.2
SGA_v2.0_scaffold120G32957 Striga asiatica HOM05D000139 ORTHO05D000103 1.4e-07 61.6 107 34.6
Aqoxy2G00500 Aquilegia oxysepala HOM05D000139 ORTHO05D000103 1.8e-07 61.2 109 33.0
arahy.Tifrunner.gnm1.ann1.5S97B2 Arachis hypogaea HOM05D000139 ORTHO05D010351 1.8e-07 61.2 219 28.8
Nitab4.5_0005130g0020 Nicotiana tabacum HOM05D000139 ORTHO05D000103 1.8e-07 61.2 91 35.2
Solyc08g066070.1 Solanum lycopersicum HOM05D000139 ORTHO05D000103 1.8e-07 61.2 92 35.9
TPR.G17762 Trifolium pratense HOM05D000139 ORTHO05D000103 1.8e-07 61.2 157 28.7
TAR633G2387 Trochodendron aralioides HOM05D000139 ORTHO05D000103 1.8e-07 61.2 109 33.9
CSS0041350 Camellia sinensis var. sinensis HOM05D000139 ORTHO05D000103 2.4e-07 60.8 109 35.8
Peaxi162Scf00055g00142 Petunia axillaris HOM05D000139 ORTHO05D000103 2.4e-07 60.8 91 36.3
arahy.Tifrunner.gnm1.ann1.XE3GUI Arachis hypogaea HOM05D000139 ORTHO05D000103 3.1e-07 60.5 183 29.0
CARHR272260 Cardamine hirsuta HOM05D000139 ORTHO05D000103 3.1e-07 60.5 111 33.3
Cc05_g16360 Coffea canephora HOM05D001395 ORTHO05D002039 3.1e-07 60.5 119 27.7
Haze_24414 Corylus avellana HOM05D000139 ORTHO05D000103 3.1e-07 60.5 110 36.4
Thhalv10012970m.g Eutrema salsugineum HOM05D000139 ORTHO05D000103 3.1e-07 60.5 111 33.3
Nn5g28338 Nelumbo nucifera HOM05D000139 ORTHO05D000103 3.1e-07 60.5 109 33.9
Nitab4.5_0000719g0010 Nicotiana tabacum HOM05D000139 ORTHO05D000103 3.1e-07 60.5 91 34.1
TWI31G1381 Tripterygium wilfordii HOM05D000139 ORTHO05D000103 3.1e-07 60.5 109 33.9
TAR633G0528 Trochodendron aralioides HOM05D000139 ORTHO05D000103 3.1e-07 60.5 108 30.6
Actinidia32607 Actinidia chinensis HOM05D000139 ORTHO05D000103 4.1e-07 60.1 91 38.5
CDE06G0215 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 4.1e-07 60.1 87 36.8
Cc01_g14880 Coffea canephora HOM05D000139 ORTHO05D000103 4.1e-07 60.1 109 34.9
Sed0000464 Sechium edule HOM05D000139 ORTHO05D000103 4.1e-07 60.1 93 29.0
A02p07700 Brassica napus HOM05D000139 ORTHO05D000103 5.4e-07 59.7 93 34.4
BraA02t05845Z Brassica rapa HOM05D000139 ORTHO05D000103 5.4e-07 59.7 93 34.4
TAR629G2422 Trochodendron aralioides HOM05D000139 ORTHO05D000103 5.4e-07 59.7 111 29.7
arahy.Tifrunner.gnm1.ann1.T74DGZ Arachis hypogaea HOM05D000139 ORTHO05D000103 7.0e-07 59.3 201 23.9
Sabra13G0122900 Salix brachista HOM05D000139 ORTHO05D000103 7.0e-07 59.3 88 38.6
EL10As4g23386 Beta vulgaris HOM05D000139 ORTHO05D000103 9.1e-07 58.9 90 27.8
BcaC03g14096 Brassica carinata HOM05D000139 ORTHO05D000103 9.1e-07 58.9 93 34.4
BolC2t07447H Brassica oleracea HOM05D000139 ORTHO05D000103 9.1e-07 58.9 93 34.4
Os05g0473500 Oryza sativa ssp. japonica HOM05D000139 ORTHO05D000103 9.1e-07 58.9 106 34.0
Psat2g054160 Pisum sativum HOM05D000139 ORTHO05D010351 9.1e-07 58.9 228 27.2
Potri.013G152900 Populus trichocarpa HOM05D000139 ORTHO05D000103 9.1e-07 58.9 90 37.8
arahy.Tifrunner.gnm1.ann1.0Q6B9J Arachis hypogaea HOM05D000139 ORTHO05D000103 1.2e-06 58.5 93 38.7
arahy.Tifrunner.gnm1.ann1.NW6N51 Arachis hypogaea HOM05D000139 ORTHO05D000103 1.2e-06 58.5 93 38.7
Sc21g0005300 Simmondsia chinensis HOM05D000139 ORTHO05D000103 1.2e-06 58.5 111 31.5
Eucgr.K02733 Eucalyptus grandis HOM05D000139 ORTHO05D000103 1.6e-06 58.2 106 27.4
Potri.019G124000 Populus trichocarpa HOM05D000139 ORTHO05D000103 1.6e-06 58.2 91 34.1
BcaB05g22430 Brassica carinata HOM05D000139 ORTHO05D000103 2.0e-06 57.8 111 30.6
SGA_v2.0_scaffold146G36119 Striga asiatica HOM05D000139 ORTHO05D000103 2.0e-06 57.8 89 34.8
EL10Ac7g15924 Beta vulgaris HOM05D000139 ORTHO05D000103 2.7e-06 57.4 92 34.8
C02p13350 Brassica napus HOM05D000139 ORTHO05D000103 2.7e-06 57.4 93 34.4
Glyma.14G199500 Glycine max HOM05D000139 ORTHO05D010351 2.7e-06 57.4 109 33.9
unitig_60.g25558 Utricularia gibba HOM05D000139 ORTHO05D000103 2.7e-06 57.4 89 36.0
Zm00001eb351930 Zea mays HOM05D000139 ORTHO05D000103 2.7e-06 57.4 106 34.9
Aqoxy3G01522 Aquilegia oxysepala HOM05D000139 ORTHO05D000103 3.5e-06 57.0 95 27.4
Carub.0008s1049 Capsella rubella HOM05D000139 ORTHO05D000103 3.5e-06 57.0 91 26.4
Eucgr.C02240 Eucalyptus grandis HOM05D000139 ORTHO05D000103 3.5e-06 57.0 91 36.3
Peaxi162Scf00089g00063 Petunia axillaris HOM05D000139 ORTHO05D000103 3.5e-06 57.0 95 30.5
TPR.G27408 Trifolium pratense HOM05D000139 ORTHO05D010351 3.5e-06 57.0 226 27.0
Zm00001eb149180 Zea mays HOM05D000139 ORTHO05D000103 3.5e-06 57.0 91 33.0
Nn3g16482 Nelumbo nucifera HOM05D000139 ORTHO05D000103 4.5e-06 56.6 92 30.4
Os01g0827500 Oryza sativa ssp. japonica HOM05D000139 ORTHO05D000103 4.5e-06 56.6 91 35.2
Psat2g054640 Pisum sativum HOM05D000139 ORTHO05D000103 4.5e-06 56.6 92 34.8
Sc04g0000690 Simmondsia chinensis HOM05D000139 ORTHO05D000103 4.5e-06 56.6 90 26.7
TAR622G1211 Trochodendron aralioides HOM05D000139 ORTHO05D000103 4.5e-06 56.6 97 28.9
Zm00001eb290300 Zea mays HOM05D000139 ORTHO05D000103 4.5e-06 56.6 106 34.9
Medtr5g073620 Medicago truncatula HOM05D000139 ORTHO05D010351 5.9e-06 56.2 252 27.0
Nitab4.5_0004750g0070 Nicotiana tabacum HOM05D000139 ORTHO05D000103 5.9e-06 56.2 95 30.5
Nitab4.5_0005560g0010 Nicotiana tabacum HOM05D000139 ORTHO05D000103 5.9e-06 56.2 95 30.5
Solyc03g111320.1 Solanum lycopersicum HOM05D000139 ORTHO05D000103 5.9e-06 56.2 95 31.6
Sopen03g030450 Solanum pennellii HOM05D000139 ORTHO05D000103 5.9e-06 56.2 95 31.6
PGSC0003DMG400039752 Solanum tuberosum HOM05D000139 ORTHO05D000103 5.9e-06 56.2 95 31.6
Ca_05666_v3 Cicer arietinum L. HOM05D000139 ORTHO05D010351 7.7e-06 55.8 85 35.3
Glyma.02G232000 Glycine max HOM05D000139 ORTHO05D010351 7.7e-06 55.8 260 26.5
Lj2g0012559 Lotus japonicus HOM05D000139 ORTHO05D000103 7.7e-06 55.8 89 34.8
MD14G1157800 Malus domestica HOM05D000139 ORTHO05D000103 7.7e-06 55.8 94 28.7
Phvul.008G252500 Phaseolus vulgaris HOM05D000139 ORTHO05D010351 7.7e-06 55.8 81 37.0
SHI19224 Sapria himalayana HOM05D000139 ORTHO05D000103 7.7e-06 55.8 91 34.1


User provided reference genes

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