Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s54g0040 Pisum sativum HOM05D000903 ORTHO05D000731 2.9e-92 342.0 190 100.0
Psat0s54g0120 Pisum sativum HOM05D000903 ORTHO05D000731 8.6e-81 303.9 218 82.1
Psat4g019720 Pisum sativum HOM05D000903 ORTHO05D000731 3.6e-63 245.4 152 82.9
Psat7g195760 Pisum sativum HOM05D000903 ORTHO05D000731 5.2e-62 241.5 161 78.3
Medtr4g124590 Medicago truncatula HOM05D000903 ORTHO05D000731 1.5e-53 213.4 151 73.5
Ca_21343_v3 Cicer arietinum L. HOM05D000903 ORTHO05D000731 1.7e-49 199.9 147 71.4
Ca_21392_v3 Cicer arietinum L. HOM05D000903 ORTHO05D000731 1.7e-49 199.9 147 71.4
TPR.G12548 Trifolium pratense HOM05D000903 ORTHO05D000731 1.6e-47 193.4 151 69.5
Phvul.003G127000 Phaseolus vulgaris HOM05D000903 ORTHO05D000731 2.9e-44 182.6 151 61.6
Glyma.17G045200 Glycine max HOM05D000903 ORTHO05D000731 3.3e-40 169.1 151 59.6
Glyma.13G114800 Glycine max HOM05D000903 ORTHO05D000731 3.7e-39 165.6 151 57.6
VMungo1215G0945 Vigna mungo HOM05D000903 ORTHO05D000731 1.3e-36 157.1 147 56.5
arahy.Tifrunner.gnm1.ann1.YN9M68 Arachis hypogaea HOM05D000903 ORTHO05D000731 1.9e-35 153.3 151 53.6
Lalb_Chr07g0181441 Lupinus albus HOM05D000903 ORTHO05D000731 3.2e-35 152.5 150 56.7
arahy.Tifrunner.gnm1.ann1.D4218R Arachis hypogaea HOM05D000903 ORTHO05D000731 5.5e-35 151.8 151 53.6
Lj4g0011716 Lotus japonicus HOM05D000903 ORTHO05D000731 3.7e-31 139.0 151 56.3
QL11p003280 Quercus lobata HOM05D000903 ORTHO05D000731 1.9e-24 116.7 154 44.8
FAN26G0756 Fragaria x ananassa HOM05D000903 ORTHO05D000731 2.5e-24 116.3 150 43.3
FAN26G2089 Fragaria x ananassa HOM05D000903 ORTHO05D000731 2.5e-24 116.3 150 43.3
FvH4_1g09530 Fragaria vesca HOM05D000903 ORTHO05D000731 9.7e-24 114.4 150 43.3
FAN23G1986 Fragaria x ananassa HOM05D000903 ORTHO05D000731 9.7e-24 114.4 150 43.3
Cfa002933 Carpinus fangiana HOM05D000903 ORTHO05D000731 1.6e-23 113.6 152 44.7
FAN28G0944 Fragaria x ananassa HOM05D000903 ORTHO05D000731 4.8e-23 112.1 150 42.7
Prupe.7G191000 Prunus persica HOM05D000903 ORTHO05D000731 6.3e-23 111.7 145 44.1
RcHm_v2.0_Chr2g0096101 Rosa chinensis HOM05D000903 ORTHO05D000731 1.8e-22 110.2 149 44.3
FAN19G2819 Fragaria x ananassa HOM05D000903 ORTHO05D000731 2.4e-22 109.8 150 42.7
Haze_26076 Corylus avellana HOM05D000903 ORTHO05D000731 1.5e-21 107.1 152 42.8
MD02G1103900 Malus domestica HOM05D000903 ORTHO05D000731 3.4e-21 105.9 146 44.5
TWI63G1286 Tripterygium wilfordii HOM05D000903 ORTHO05D000731 4.5e-21 105.5 152 40.1
Atru.chr7.1781 Acer truncatum HOM05D000903 ORTHO05D000731 5.9e-21 105.1 151 41.7
TWI34G0994 Tripterygium wilfordii HOM05D000903 ORTHO05D000731 7.7e-21 104.8 152 40.8
MD15G1224300 Malus domestica HOM05D000903 ORTHO05D000731 2.1e-18 96.7 146 42.5
Thecc.09G069300 Theobroma cacao HOM05D000903 ORTHO05D000731 4.6e-18 95.5 150 38.7
COL.COLO4_21197 Corchorus olitorius HOM05D000903 ORTHO05D000731 3.0e-17 92.8 150 39.3
TAR624G0448 Trochodendron aralioides HOM05D000903 ORTHO05D000731 4.3e-16 89.0 154 35.7
Duzib168G0371 Durio zibethinus HOM05D000903 ORTHO05D000731 5.7e-16 88.6 150 36.7
GSVIVG01016674001 Vitis vinifera HOM05D000903 ORTHO05D000731 1.3e-15 87.4 146 37.0
GSVIVG01015004001 Vitis vinifera HOM05D000903 ORTHO05D000731 4.8e-15 85.5 149 34.9
Nn6g35723 Nelumbo nucifera HOM05D000903 ORTHO05D000731 1.4e-14 84.0 153 34.0
Aqoxy7G04177 Aquilegia oxysepala HOM05D000903 ORTHO05D000731 3.1e-14 82.8 153 34.0
Dinv25500 Davidia involucrata HOM05D000903 ORTHO05D000731 3.1e-14 82.8 151 35.1
Haze_16131 Corylus avellana HOM05D000903 ORTHO05D000731 1.2e-13 80.9 154 38.3
Nn8g38523 Nelumbo nucifera HOM05D000903 ORTHO05D000731 1.2e-13 80.9 155 32.3
Cfa003465 Carpinus fangiana HOM05D000903 ORTHO05D000731 2.6e-13 79.7 152 36.8
Dinv20387 Davidia involucrata HOM05D000903 ORTHO05D000731 2.6e-13 79.7 152 36.2
QL05p001282 Quercus lobata HOM05D000903 ORTHO05D000731 3.4e-13 79.3 137 36.5
Hma1.2p1_0090F.1_g045880 Hydrangea macrophylla HOM05D000903 ORTHO05D000731 5.9e-13 78.6 142 34.5
Potri.003G072300 Populus trichocarpa HOM05D000903 ORTHO05D000731 1.3e-12 77.4 153 35.3
CiPaw.01G211900 Carya illinoinensis HOM05D000903 ORTHO05D000731 1.7e-12 77.0 154 37.0
MBI19_g32868_MAGBIO Magnolia biondii HOM05D000903 ORTHO05D000731 2.2e-12 76.6 155 33.5
CSS0007576 Camellia sinensis var. sinensis HOM05D000903 ORTHO05D000731 8.5e-12 74.7 154 34.4
CSS0024812 Camellia sinensis var. sinensis HOM05D000903 ORTHO05D000731 8.5e-12 74.7 154 34.4
CSS0011322 Camellia sinensis var. sinensis HOM05D000903 ORTHO05D000731 1.1e-11 74.3 151 32.5
MD17G1154000 Malus domestica HOM05D000903 ORTHO05D000731 1.9e-11 73.6 134 37.3
Manes.11G013100 Manihot esculenta HOM05D000903 ORTHO05D000731 1.9e-11 73.6 153 35.9
Nitab4.5_0008337g0020 Nicotiana tabacum HOM05D000903 ORTHO05D000731 1.9e-11 73.6 154 33.1
Sabra01G0129500 Salix brachista HOM05D000903 ORTHO05D000731 1.9e-11 73.6 152 32.2
TAR383G0855 Trochodendron aralioides HOM05D000903 ORTHO05D000731 1.9e-11 73.6 151 35.8
Gohir.D07G017400 Gossypium hirsutum HOM05D000903 ORTHO05D000731 4.2e-11 72.4 150 35.3
Gorai.001G018100 Gossypium raimondii HOM05D000903 ORTHO05D000731 4.2e-11 72.4 150 35.3
Thecc.06G129600 Theobroma cacao HOM05D000903 ORTHO05D000731 4.2e-11 72.4 153 35.3
EL10Ac8g18960 Beta vulgaris HOM05D000903 ORTHO05D000731 7.2e-11 71.6 117 35.9
VMungo0331G1956 Vigna mungo HOM05D000903 ORTHO05D000731 7.2e-11 71.6 151 35.1
Lalb_Chr17g0343271 Lupinus albus HOM05D000903 ORTHO05D000731 9.4e-11 71.2 147 35.4
Nitab4.5_0008798g0010 Nicotiana tabacum HOM05D000903 ORTHO05D000731 9.4e-11 71.2 154 31.2
FAN02G2467 Fragaria x ananassa HOM05D000903 ORTHO05D000731 1.2e-10 70.9 139 35.3
Lj3g0023583 Lotus japonicus HOM05D000903 ORTHO05D000731 1.2e-10 70.9 125 34.4
Ca_23432_v3 Cicer arietinum L. HOM05D000903 ORTHO05D000731 1.6e-10 70.5 129 36.4
Gohir.A07G017600 Gossypium hirsutum HOM05D000903 ORTHO05D000731 1.6e-10 70.5 149 34.2
Peaxi162Scf00038g02250 Petunia axillaris HOM05D000903 ORTHO05D000731 2.1e-10 70.1 136 33.1
Sabra03G0043100 Salix brachista HOM05D000903 ORTHO05D000731 2.7e-10 69.7 145 32.4
FAN09G3590 Fragaria x ananassa HOM05D000903 ORTHO05D000731 3.6e-10 69.3 139 34.5
Medtr8g023080 Medicago truncatula HOM05D000903 ORTHO05D000731 3.6e-10 69.3 148 34.5
Ciclev10010149m.g Citrus clementina HOM05D000903 ORTHO05D000731 4.7e-10 68.9 149 35.6
Manes.04G150500 Manihot esculenta HOM05D000903 ORTHO05D000731 4.7e-10 68.9 157 33.8
Prupe.3G031400 Prunus persica HOM05D000903 ORTHO05D000731 4.7e-10 68.9 132 37.9
Atru.chr1.4139 Acer truncatum HOM05D000903 ORTHO05D000731 6.1e-10 68.6 121 36.4
Dinv37822 Davidia involucrata HOM05D000903 ORTHO05D000731 6.1e-10 68.6 155 32.9
FvH4_6g35770 Fragaria vesca HOM05D000903 ORTHO05D000731 6.1e-10 68.6 139 34.5
Gorai.009G038700 Gossypium raimondii HOM05D000903 ORTHO05D000731 6.1e-10 68.6 146 32.2
Potri.001G163200 Populus trichocarpa HOM05D000903 ORTHO05D000731 1.0e-09 67.8 155 33.5
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 1.4e-09 67.4 37 89.2
Solyc03g123570.3 Solanum lycopersicum HOM05D000903 ORTHO05D000731 1.4e-09 67.4 150 31.3
MD09G1173300 Malus domestica HOM05D000903 ORTHO05D000731 1.8e-09 67.0 129 36.4
Phvul.010G123500 Phaseolus vulgaris HOM05D000903 ORTHO05D000731 1.8e-09 67.0 127 34.6
Psat4g165520 Pisum sativum HOM05D000903 ORTHO05D000731 1.8e-09 67.0 151 35.1
Sopen03g041340 Solanum pennellii HOM05D000903 ORTHO05D000731 1.8e-09 67.0 150 31.3
MELO3C010117.2 Cucumis melo HOM05D000903 ORTHO05D000731 3.0e-09 66.2 138 28.3
Gohir.A05G036666 Gossypium hirsutum HOM05D000903 ORTHO05D000731 3.0e-09 66.2 148 33.1
RcHm_v2.0_Chr2g0147811 Rosa chinensis HOM05D000903 ORTHO05D000731 3.0e-09 66.2 118 38.1
CiPaw.02G131400 Carya illinoinensis HOM05D000903 ORTHO05D000731 3.9e-09 65.9 154 33.8
Lj9C538G1 Lonicera japonica HOM05D000903 ORTHO05D000731 3.9e-09 65.9 170 28.8
FAN05G4582 Fragaria x ananassa HOM05D000903 ORTHO05D000731 5.1e-09 65.5 139 33.8
Oeu006747.1 Olea europaea HOM05D000903 ORTHO05D000731 5.1e-09 65.5 160 30.0
Glyma.07G045600 Glycine max HOM05D000903 ORTHO05D000731 6.7e-09 65.1 149 32.9
FAN14G3814 Fragaria x ananassa HOM05D000903 ORTHO05D000731 8.8e-09 64.7 139 33.8
Glyma.16G013500 Glycine max HOM05D000903 ORTHO05D000731 8.8e-09 64.7 147 34.7
Solyc12g049590.2 Solanum lycopersicum HOM05D000903 ORTHO05D000731 8.8e-09 64.7 129 31.8
Sopen12g024070 Solanum pennellii HOM05D000903 ORTHO05D000731 8.8e-09 64.7 129 31.8
Lj5A30G68 Lonicera japonica HOM05D000903 ORTHO05D000731 1.1e-08 64.3 143 33.6
CANSAT56G1400 Cannabis sativa HOM05D000903 ORTHO05D000731 1.5e-08 63.9 155 34.8
TWI14G0698 Tripterygium wilfordii HOM05D000903 ORTHO05D000731 1.5e-08 63.9 152 32.9
COL.COLO4_30859 Corchorus olitorius HOM05D000903 ORTHO05D000731 2.0e-08 63.5 154 33.1
Psat0s3352g0160 Pisum sativum HOM05D000529 ORTHO05D020973 2.6e-08 63.2 37 86.5
Oeu030622.1 Olea europaea HOM05D000903 ORTHO05D000731 3.3e-08 62.8 123 34.1
Hund08906 Selenicereus undatus HOM05D000903 ORTHO05D000731 3.3e-08 62.8 147 30.6
PGR044G2758 Punica granatum HOM05D000903 ORTHO05D000731 5.7e-08 62.0 145 32.4
SalBow6G1911 Salvia bowleyana HOM05D000903 ORTHO05D000731 5.7e-08 62.0 152 30.3
Ciclev10027324m.g Citrus clementina HOM05D000903 ORTHO05D000731 7.4e-08 61.6 136 33.8
Psat3g198120 Pisum sativum HOM05D003369 ORTHO05D004089 7.4e-08 61.6 37 83.8
DCAR_024783 Daucus carota HOM05D000903 ORTHO05D000731 9.7e-08 61.2 125 35.2
DCAR_007658 Daucus carota HOM05D000903 ORTHO05D000731 1.3e-07 60.8 155 29.7
PGR102G1236 Punica granatum HOM05D000903 ORTHO05D000731 1.3e-07 60.8 128 34.4
Rhsim08G0244300 Rhododendron simsii HOM05D000903 ORTHO05D000731 1.3e-07 60.8 142 31.0
vmacro15083 Vaccinium macrocarpon HOM05D000903 ORTHO05D000731 1.7e-07 60.5 134 30.6
CsaV3_1G044910 Cucumis sativus L. HOM05D000903 ORTHO05D000731 2.2e-07 60.1 138 29.0
Duzib235G0423 Durio zibethinus HOM05D000903 ORTHO05D000731 2.2e-07 60.1 158 34.2
Nitab4.5_0000357g0120 Nicotiana tabacum HOM05D000903 ORTHO05D000731 2.2e-07 60.1 154 30.5
Ah.09g228880 Amaranthus hybridus HOM05D000903 ORTHO05D000731 2.8e-07 59.7 115 35.7
SalBow7G0879 Salvia bowleyana HOM05D000903 ORTHO05D000731 2.8e-07 59.7 149 34.9
Gohir.A06G084200 Gossypium hirsutum HOM05D000903 ORTHO05D000731 3.7e-07 59.3 150 30.7
ClCG03G011230 Citrullus lanatus HOM05D000903 ORTHO05D000731 4.8e-07 58.9 138 26.8
Eucgr.C03186 Eucalyptus grandis HOM05D000903 ORTHO05D000731 4.8e-07 58.9 141 31.2
Psat4g103760 Pisum sativum HOM05D001026 ORTHO05D020973 4.8e-07 58.9 37 78.4
PGSC0003DMG400009147 Solanum tuberosum HOM05D000903 ORTHO05D000731 4.8e-07 58.9 151 31.1
Gohir.D06G082000 Gossypium hirsutum HOM05D000903 ORTHO05D000731 6.3e-07 58.5 150 29.3
AL3G26590 Arabidopsis lyrata HOM05D000903 ORTHO05D000731 8.2e-07 58.2 132 32.6
arahy.Tifrunner.gnm1.ann1.E3SGTC Arachis hypogaea HOM05D000903 ORTHO05D000731 1.1e-06 57.8 124 32.3
arahy.Tifrunner.gnm1.ann1.YWUF76 Arachis hypogaea HOM05D000903 ORTHO05D000731 1.1e-06 57.8 124 32.3
Nitab4.5_0004589g0020 Nicotiana tabacum HOM05D000903 ORTHO05D000731 1.1e-06 57.8 150 31.3
PSO135G0716 Papaver somniferum HOM05D000903 ORTHO05D000731 1.1e-06 57.8 154 29.2
Aa31LG8G1540 Aethionema arabicum HOM05D000903 ORTHO05D000731 1.4e-06 57.4 132 34.1
MSTRG.10916 Avicennia marina HOM05D000903 ORTHO05D000731 1.4e-06 57.4 143 29.4
PSO724G0463 Papaver somniferum HOM05D000903 ORTHO05D000731 1.4e-06 57.4 154 31.2
Gorai.010G095400 Gossypium raimondii HOM05D000903 ORTHO05D000731 1.8e-06 57.0 150 28.7
ATR0099G093 Amborella trichopoda HOM05D000903 ORTHO05D000731 2.4e-06 56.6 181 24.3
CAN.G1073.6 Capsicum annuum HOM05D000903 ORTHO05D000731 2.4e-06 56.6 150 30.7
Eucgr.J02598 Eucalyptus grandis HOM05D000903 ORTHO05D000731 2.4e-06 56.6 129 33.3
Thhalv10019882m.g Eutrema salsugineum HOM05D000903 ORTHO05D000731 2.4e-06 56.6 126 34.1
PSO104G0117 Papaver somniferum HOM05D000903 ORTHO05D000731 2.4e-06 56.6 128 33.6
unitig_0.g2225 Utricularia gibba HOM05D000903 ORTHO05D000731 3.1e-06 56.2 106 30.2
Hund05706 Selenicereus undatus HOM05D000903 ORTHO05D000731 4.1e-06 55.8 81 40.7
Cc04_g00770 Coffea canephora HOM05D000903 ORTHO05D000731 5.3e-06 55.5 134 29.1
Migut.D00913 Erythranthe guttata HOM05D000903 ORTHO05D000731 5.3e-06 55.5 127 32.3
Sp7g30990 Schrenkiella parvula HOM05D000903 ORTHO05D000731 5.3e-06 55.5 149 33.6
TPR.G18151 Trifolium pratense HOM05D000903 ORTHO05D000731 5.3e-06 55.5 138 34.1
arahy.Tifrunner.gnm1.ann1.LB917B Arachis hypogaea HOM05D000903 ORTHO05D000731 7.0e-06 55.1 124 31.5
MSTRG.19424 Avicennia marina HOM05D000903 ORTHO05D000731 7.0e-06 55.1 137 31.4
Duzib160G0119 Durio zibethinus HOM05D000903 ORTHO05D000731 7.0e-06 55.1 140 34.3
Manes.16G089800 Manihot esculenta HOM05D000903 ORTHO05D000731 7.0e-06 55.1 67 43.3
AT3G14270 Arabidopsis thaliana HOM05D000903 ORTHO05D000731 9.1e-06 54.7 122 36.1
Lj7C693G8 Lonicera japonica HOM05D000903 ORTHO05D000731 9.1e-06 54.7 111 31.5
Psat5g117000 Pisum sativum HOM05D001026 ORTHO05D020973 9.1e-06 54.7 37 81.1
THA.LOC104810391 Tarenaya hassleriana HOM05D000903 ORTHO05D000731 9.1e-06 54.7 120 34.2
Zm00001eb177150 Zea mays HOM05D000903 ORTHO05D000731 9.1e-06 54.7 142 29.6


User provided reference genes

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