Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s5068g0040 Pisum sativum HOM05D005560 ORTHO05D006862 6.8e-51 203.8 107 100.0
Ca_00962_v3 Cicer arietinum L. HOM05D005560 ORTHO05D006862 8.6e-46 186.8 104 93.3
Glyma.09G033400 Glycine max HOM05D005560 ORTHO05D006862 4.3e-45 184.5 106 90.6
Medtr2g097970 Medicago truncatula HOM05D005560 ORTHO05D006862 1.6e-44 182.6 104 90.4
Medtr2g033590 Medicago truncatula HOM05D005560 ORTHO05D006862 3.6e-44 181.4 104 89.4
TPR.G33875 Trifolium pratense HOM05D005560 ORTHO05D006862 4.7e-44 181.0 104 91.3
TPR.G30159 Trifolium pratense HOM05D005560 ORTHO05D006862 8.9e-43 176.8 104 89.4
Glyma.15G138200 Glycine max HOM05D005560 ORTHO05D006862 2.0e-42 175.6 104 88.5
Lj6g0013029 Lotus japonicus HOM05D005560 ORTHO05D006862 4.4e-42 174.5 104 86.5
arahy.Tifrunner.gnm1.ann1.JWH7Q7 Arachis hypogaea HOM05D005560 ORTHO05D006862 2.2e-41 172.2 104 85.6
arahy.Tifrunner.gnm1.ann1.K4HITJ Arachis hypogaea HOM05D005560 ORTHO05D006862 3.8e-41 171.4 104 85.6
Lalb_Chr18g0058561 Lupinus albus HOM05D005560 ORTHO05D006862 4.1e-40 167.9 104 83.7
Phvul.006G120000 Phaseolus vulgaris HOM05D005560 ORTHO05D006862 5.4e-40 167.5 98 89.8
VMungo0540G1255 Vigna mungo HOM05D005560 ORTHO05D006862 1.6e-39 166.0 98 88.8
Lalb_Chr20g0120691 Lupinus albus HOM05D005560 ORTHO05D006862 1.3e-38 162.9 101 83.2
Manes.11G109500 Manihot esculenta HOM05D005560 ORTHO05D006862 7.3e-37 157.1 101 74.3
TAR371G1140 Trochodendron aralioides HOM05D005560 ORTHO05D006862 1.2e-36 156.4 104 75.0
Sabra10G0114700 Salix brachista HOM05D005560 ORTHO05D006862 2.8e-36 155.2 100 78.0
Manes.11G060400 Manihot esculenta HOM05D005560 ORTHO05D006862 3.6e-36 154.8 101 71.3
Dinv15139 Davidia involucrata HOM05D005560 ORTHO05D006862 1.1e-35 153.3 104 72.1
Nn3g21792 Nelumbo nucifera HOM05D005560 ORTHO05D006862 1.8e-35 152.5 104 72.1
Hma1.2p1_1400F.1_g280950 Hydrangea macrophylla HOM05D005560 ORTHO05D006862 2.4e-35 152.1 105 72.4
MBI10_g06741_MAGBIO Magnolia biondii HOM05D005560 ORTHO05D006862 4.0e-35 151.4 105 70.5
Nn8g38759 Nelumbo nucifera HOM05D005560 ORTHO05D006862 4.0e-35 151.4 105 71.4
Glyma.17G036700 Glycine max HOM05D005560 ORTHO05D006862 5.2e-35 151.0 97 81.4
Potri.008G102200 Populus trichocarpa HOM05D005560 ORTHO05D006862 9.0e-35 150.2 100 76.0
Hund11992 Selenicereus undatus HOM05D005560 ORTHO05D006862 9.0e-35 150.2 101 71.3
Lj6E694T0 Lonicera japonica HOM05D005560 ORTHO05D006862 1.2e-34 149.8 104 72.1
DCAR_026978 Daucus carota HOM05D005560 ORTHO05D006862 1.5e-34 149.4 105 69.5
QL06p012974 Quercus lobata HOM05D005560 ORTHO05D006862 2.0e-34 149.1 104 73.1
CDE06G0356 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 2.6e-34 148.7 104 69.2
Dinv44258 Davidia involucrata HOM05D005560 ORTHO05D006862 2.6e-34 148.7 104 69.2
TWI09G0868 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 3.4e-34 148.3 104 66.3
Ciclev10006078m.g Citrus clementina HOM05D005560 ORTHO05D006862 2.2e-33 145.6 104 71.2
COL.COLO4_34571 Corchorus olitorius HOM05D005560 ORTHO05D006862 2.9e-33 145.2 104 69.2
Prupe.1G113300 Prunus persica HOM05D005560 ORTHO05D006862 6.4e-33 144.1 104 66.3
CSS0010593 Camellia sinensis var. sinensis HOM05D005560 ORTHO05D006862 1.4e-32 142.9 104 68.3
TWI53G0383 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 1.4e-32 142.9 104 65.4
Lsat_1_v5_gn_6_116081 Lactuca sativa HOM05D005560 ORTHO05D006862 3.2e-32 141.7 105 71.4
Potri.010G148600 Populus trichocarpa HOM05D005560 ORTHO05D006862 3.2e-32 141.7 100 72.0
Cpa.g.sc9.16 Carica papaya HOM05D005560 ORTHO05D006862 5.4e-32 141.0 104 67.3
Haze_01347 Corylus avellana HOM05D005560 ORTHO05D006862 5.4e-32 141.0 104 67.3
Sc13g0007210 Simmondsia chinensis HOM05D005560 ORTHO05D006862 9.3e-32 140.2 104 68.3
Atru.chr4.3063 Acer truncatum HOM05D005560 ORTHO05D006862 2.1e-31 139.0 104 65.4
Gohir.A02G055900 Gossypium hirsutum HOM05D005560 ORTHO05D006862 2.1e-31 139.0 104 65.4
Gohir.D02G061100 Gossypium hirsutum HOM05D005560 ORTHO05D006862 2.1e-31 139.0 104 65.4
vmacro09713 Vaccinium macrocarpon HOM05D005560 ORTHO05D006862 2.1e-31 139.0 104 69.2
FAN07G2916 Fragaria x ananassa HOM05D005560 ORTHO05D006862 2.7e-31 138.7 104 63.5
Solyc01g058280.4 Solanum lycopersicum HOM05D005560 ORTHO05D006862 3.5e-31 138.3 104 65.4
GSVIVG01034955001 Vitis vinifera HOM05D001281 ORTHO05D001139 3.5e-31 138.3 104 65.4
EL10Ac3g05546 Beta vulgaris HOM05D005560 ORTHO05D006862 4.6e-31 137.9 104 65.4
Duzib212G0918 Durio zibethinus HOM05D005560 ORTHO05D006862 4.6e-31 137.9 104 64.4
FAN12G4019 Fragaria x ananassa HOM05D005560 ORTHO05D006862 4.6e-31 137.9 104 63.5
Nitab4.5_0002561g0080 Nicotiana tabacum HOM05D005560 ORTHO05D006862 4.6e-31 137.9 105 63.8
Nitab4.5_0012592g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 4.6e-31 137.9 104 64.4
THA.LOC104827102 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 4.6e-31 137.9 104 66.3
Thecc.04G305600 Theobroma cacao HOM05D005560 ORTHO05D006862 6.0e-31 137.5 105 64.8
PGSC0003DMG401029058 Solanum tuberosum HOM05D005560 ORTHO05D006862 7.8e-31 137.1 104 64.4
Cc06_g13180 Coffea canephora HOM05D005560 ORTHO05D006862 1.0e-30 136.7 104 65.4
ECA246G4816 Erigeron canadensis HOM05D005560 ORTHO05D006862 1.0e-30 136.7 100 70.0
Gohir.A10G174500 Gossypium hirsutum HOM05D005560 ORTHO05D006862 1.0e-30 136.7 104 61.5
MD16G1149600 Malus domestica HOM05D005560 ORTHO05D006862 1.0e-30 136.7 97 67.0
Sopen01g023770 Solanum pennellii HOM05D005560 ORTHO05D006862 1.0e-30 136.7 104 64.4
Sed0008051 Sechium edule HOM05D005560 ORTHO05D006862 1.3e-30 136.3 98 69.4
Ah.13g071490 Amaranthus hybridus HOM05D005560 ORTHO05D006862 1.7e-30 136.0 104 68.3
ClCG03G017390 Citrullus lanatus HOM05D005560 ORTHO05D006862 1.7e-30 136.0 98 69.4
SGA_v2.0_scaffold157G37338 Striga asiatica HOM05D005560 ORTHO05D006862 1.7e-30 136.0 104 63.5
AUR62016242 Chenopodium quinoa HOM05D005560 ORTHO05D006862 3.0e-30 135.2 81 76.5
MD13G1149300 Malus domestica HOM05D005560 ORTHO05D006862 3.0e-30 135.2 97 66.0
Peaxi162Scf00228g00733 Petunia axillaris HOM05D005560 ORTHO05D006862 3.0e-30 135.2 104 63.5
RcHm_v2.0_Chr4g0425981 Rosa chinensis HOM05D005560 ORTHO05D006862 3.0e-30 135.2 96 68.8
ATR0598G271 Amborella trichopoda HOM05D005560 ORTHO05D006862 5.1e-30 134.4 105 67.6
Sed0013449 Sechium edule HOM05D005560 ORTHO05D006862 5.1e-30 134.4 99 66.7
THA.LOC104818873 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 6.6e-30 134.0 104 65.4
MSTRG.3846 Avicennia marina HOM05D005560 ORTHO05D006862 8.7e-30 133.7 104 62.5
Oeu048287.1 Olea europaea HOM05D005560 ORTHO05D006862 8.7e-30 133.7 97 64.9
CAN.G938.2 Capsicum annuum HOM05D005560 ORTHO05D006862 1.1e-29 133.3 104 62.5
QL02p001630 Quercus lobata HOM05D005560 ORTHO05D006862 1.5e-29 132.9 87 71.3
FvH4_4g20620 Fragaria vesca HOM05D005560 ORTHO05D006862 1.9e-29 132.5 104 61.5
PSO063G2615 Papaver somniferum HOM05D005560 ORTHO05D006862 1.9e-29 132.5 95 69.5
PSO782G0665 Papaver somniferum HOM05D005560 ORTHO05D006862 2.5e-29 132.1 95 68.4
SalBow8G4800 Salvia bowleyana HOM05D005560 ORTHO05D006862 2.5e-29 132.1 105 59.0
SEGI_13216 Sequoiadendron giganteum HOM05D005560 ORTHO05D006862 2.5e-29 132.1 105 64.8
CAN.G1860.1 Capsicum annuum HOM05D005560 ORTHO05D006862 3.3e-29 131.7 104 61.5
MELO3C015305.2 Cucumis melo HOM05D005560 ORTHO05D006862 3.3e-29 131.7 98 66.3
Aqoxy5G02923 Aquilegia oxysepala HOM05D005560 ORTHO05D006862 5.6e-29 131.0 101 69.3
CiPaw.01G134900 Carya illinoinensis HOM05D005560 ORTHO05D006862 9.6e-29 130.2 104 63.5
Lsat_1_v5_gn_3_139661 Lactuca sativa HOM05D005560 ORTHO05D006862 1.3e-28 129.8 98 69.4
CANSAT78G0499 Cannabis sativa HOM05D005560 ORTHO05D006862 1.6e-28 129.4 100 64.0
Aa31LG11G8340 Aethionema arabicum HOM05D005560 ORTHO05D006862 2.1e-28 129.0 97 67.0
Eucgr.F02752 Eucalyptus grandis HOM05D005560 ORTHO05D006862 3.6e-28 128.3 120 58.3
Gohir.D10G181000 Gossypium hirsutum HOM05D005560 ORTHO05D006862 4.8e-28 127.9 104 59.6
CARHR287970 Cardamine hirsuta HOM05D005560 ORTHO05D006862 6.2e-28 127.5 97 64.9
CsaV3_1G038810 Cucumis sativus L. HOM05D005560 ORTHO05D006862 8.1e-28 127.1 98 64.3
HanXRQChr01g0022341 Helianthus annuus HOM05D005560 ORTHO05D006862 8.1e-28 127.1 82 73.2
HPP92_015326 Vanilla planifolia HOM05D005560 ORTHO05D006862 1.4e-27 126.3 96 66.7
BraA06t26743Z Brassica rapa HOM05D005560 ORTHO05D006862 1.8e-27 125.9 99 67.7
Thhalv10005160m.g Eutrema salsugineum HOM05D005560 ORTHO05D006862 1.8e-27 125.9 97 64.9
CiPaw.02G072600 Carya illinoinensis HOM05D005560 ORTHO05D006862 2.4e-27 125.6 96 65.6
Gorai.005G068700 Gossypium raimondii HOM05D005560 ORTHO05D006862 3.1e-27 125.2 129 52.7
Sp2g19850 Schrenkiella parvula HOM05D005560 ORTHO05D006862 3.1e-27 125.2 97 64.9
BcaC04g23733 Brassica carinata HOM05D005560 ORTHO05D006862 5.3e-27 124.4 97 63.9
AT5G49540 Arabidopsis thaliana HOM05D005560 ORTHO05D006862 6.9e-27 124.0 97 63.9
BcaB04g19617 Brassica carinata HOM05D005560 ORTHO05D006862 6.9e-27 124.0 97 63.9
C09p05260 Brassica napus HOM05D005560 ORTHO05D006862 6.9e-27 124.0 101 62.4
BolC9t53453H Brassica oleracea HOM05D005560 ORTHO05D006862 6.9e-27 124.0 101 62.4
PGR004G2070 Punica granatum HOM05D005560 ORTHO05D006862 6.9e-27 124.0 104 63.5
AL8G23330 Arabidopsis lyrata HOM05D005560 ORTHO05D006862 9.0e-27 123.6 97 63.9
A09p04870 Brassica napus HOM05D005560 ORTHO05D006862 9.0e-27 123.6 100 63.0
BraA09t36124Z Brassica rapa HOM05D005560 ORTHO05D006862 9.0e-27 123.6 100 63.0
Migut.O00585 Erythranthe guttata HOM05D005560 ORTHO05D006862 9.0e-27 123.6 98 60.2
CAN.G484.71 Capsicum annuum HOM05D005560 ORTHO05D006862 1.2e-26 123.2 104 59.6
Carub.0008s0942 Capsella rubella HOM05D005560 ORTHO05D006862 2.0e-26 122.5 97 62.9
Migut.G00039 Erythranthe guttata HOM05D005560 ORTHO05D006862 2.6e-26 122.1 94 61.7
A06p38280 Brassica napus HOM05D005560 ORTHO05D006862 3.4e-26 121.7 98 65.3
Gorai.011G202500 Gossypium raimondii HOM05D005560 ORTHO05D006862 3.4e-26 121.7 104 57.7
BolC7t44528H Brassica oleracea HOM05D005560 ORTHO05D006862 7.6e-26 120.6 98 64.3
CDE07G1301 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 1.1e-24 116.7 72 75.0
Zm00001eb343110 Zea mays HOM05D005560 ORTHO05D006862 3.5e-23 111.7 79 67.1
Zm00001eb295100 Zea mays HOM05D005560 ORTHO05D006862 4.6e-23 111.3 86 61.6
HanXRQChr10g0310551 Helianthus annuus HOM05D005560 ORTHO05D006862 7.9e-23 110.5 72 72.2
AUR62032779 Chenopodium quinoa HOM05D005560 ORTHO05D006862 1.0e-22 110.2 66 75.8
arahy.Tifrunner.gnm1.ann1.CCFX3U Arachis hypogaea HOM05D001281 ORTHO05D001139 3.0e-22 108.6 99 65.7
unitig_37.g12416 Utricularia gibba HOM05D005560 ORTHO05D007484 6.7e-22 107.5 89 55.1
Mapoly0008s0274 Marchantia polymorpha HOM05D005560 ORTHO05D006862 7.4e-21 104.0 94 52.1
Oeu052158.1 Olea europaea HOM05D005560 ORTHO05D006862 6.2e-20 100.9 105 50.5
SMO117G0178 Selaginella moellendorffii HOM05D005560 ORTHO05D006862 5.3e-19 97.8 83 55.4
Nitab4.5_0008521g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 3.4e-18 95.1 71 62.0
AagrBONN_evm.TU.Sc2ySwM_362.2649 Anthoceros agrestis HOM05D005560 ORTHO05D006862 8.4e-17 90.5 92 51.1
Nn8g41304 Nelumbo nucifera HOM05D005560 ORTHO05D006862 1.4e-16 89.7 62 74.2
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 7.9e-15 84.0 73 53.4
CBR_g22909 Chara braunii HOM05D005560 ORTHO05D006862 1.3e-14 83.2 94 44.7
arahy.Tifrunner.gnm1.ann1.NI9QGM Arachis hypogaea HOM05D005560 ORTHO05D006862 6.7e-14 80.9 78 60.3
AagrBONN_evm.TU.Sc2ySwM_340.65 Anthoceros agrestis HOM05D005560 ORTHO05D006862 2.5e-13 79.0 76 52.6
Nn1g07816 Nelumbo nucifera HOM05D005560 ORTHO05D006862 3.3e-13 78.6 54 68.5
TWI73G0491 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 2.2e-09 65.9 51 52.9
PRCOL_00001634 Prasinoderma coloniale HOM05D005560 ORTHO05D006862 5.1e-06 54.7 91 36.3


User provided reference genes

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