Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 8.6e-160 567.0 300 100.0
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 1.6e-142 509.6 300 86.3
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 2.7e-137 492.3 301 85.0
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 3.1e-133 478.8 305 85.6
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 5.6e-127 458.0 300 79.3
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 4.3e-119 431.8 304 76.3
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 5.6e-119 431.4 301 76.4
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 2.4e-117 426.0 296 77.4
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 2.9e-115 419.1 313 74.8
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 5.5e-114 414.8 313 74.1
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 2.4e-109 399.4 259 79.5
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 2.7e-105 386.0 304 67.8
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 7.9e-105 384.4 269 72.1
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 7.9e-105 384.4 244 80.3
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 2.3e-104 382.9 311 66.9
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 3.9e-104 382.1 269 72.1
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 4.3e-103 378.6 301 67.4
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 7.4e-103 377.9 266 73.3
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 9.7e-103 377.5 303 66.7
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 1.3e-102 377.1 259 74.5
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 2.8e-102 375.9 268 70.9
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 3.7e-102 375.6 305 66.2
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 3.7e-102 375.6 305 66.2
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 8.2e-102 374.4 269 71.7
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 1.4e-101 373.6 301 68.1
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 2.6e-100 369.4 302 66.2
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 3.4e-100 369.0 258 72.5
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 3.4e-100 369.0 261 72.4
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 5.9e-100 368.2 245 76.3
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 1.7e-99 366.7 253 73.1
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 2.9e-99 365.9 301 66.4
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 2.9e-99 365.9 300 65.0
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 3.8e-99 365.5 315 65.7
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 1.9e-98 363.2 264 72.7
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 1.9e-98 363.2 303 65.3
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 2.5e-98 362.8 300 63.7
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 3.2e-98 362.5 314 65.3
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 5.5e-98 361.7 286 67.1
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 1.2e-97 360.5 306 64.7
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 2.7e-97 359.4 311 65.3
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 2.7e-97 359.4 302 62.9
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 3.6e-97 359.0 259 71.8
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 6.1e-97 358.2 302 62.9
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 7.9e-97 357.8 255 71.4
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 7.9e-97 357.8 246 73.2
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 3.3e-95 352.4 295 65.4
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 3.3e-95 352.4 288 66.7
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 4.3e-95 352.1 270 69.6
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 4.3e-95 352.1 291 64.6
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 4.3e-95 352.1 291 64.6
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 4.3e-95 352.1 271 66.8
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 4.3e-95 352.1 246 70.7
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 5.7e-95 351.7 258 70.5
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 7.4e-95 351.3 258 70.2
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 9.7e-95 350.9 295 65.8
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 1.7e-94 350.1 293 64.8
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 4.8e-94 348.6 293 63.8
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 8.2e-94 347.8 288 63.9
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 8.2e-94 347.8 311 61.4
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 1.1e-93 347.4 284 62.0
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 1.4e-93 347.1 307 63.5
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 1.8e-93 346.7 247 72.1
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 2.4e-93 346.3 259 68.3
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 4.1e-93 345.5 297 64.0
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 4.1e-93 345.5 266 68.8
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 4.1e-93 345.5 266 68.8
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 5.3e-93 345.1 300 63.3
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 5.3e-93 345.1 292 63.4
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.5e-92 343.6 269 68.0
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 1.5e-92 343.6 273 72.5
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 3.4e-92 342.4 262 67.9
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 4.5e-92 342.0 259 66.0
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 5.9e-92 341.7 249 69.9
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 7.7e-92 341.3 246 70.7
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 1.3e-91 340.5 294 60.2
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 2.2e-91 339.7 287 64.1
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 2.9e-91 339.3 236 71.2
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 5.0e-91 338.6 259 66.0
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 5.0e-91 338.6 260 65.8
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 5.0e-91 338.6 260 65.8
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 6.5e-91 338.2 294 59.5
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 6.5e-91 338.2 298 60.4
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 8.5e-91 337.8 256 68.0
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 8.5e-91 337.8 244 70.5
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 1.9e-90 336.7 278 61.9
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 9.4e-90 334.3 259 65.6
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.2e-89 334.0 299 63.9
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 1.6e-89 333.6 298 59.1
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 1.6e-89 333.6 249 66.7
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 1.6e-89 333.6 251 67.7
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 2.7e-89 332.8 286 63.6
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 1.0e-88 330.9 276 65.2
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 2.3e-88 329.7 269 62.5
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 4.4e-87 325.5 278 65.1
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 7.4e-87 324.7 252 68.3
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 7.4e-87 324.7 244 69.3
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 7.4e-87 324.7 236 67.4
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 2.2e-86 323.2 244 68.9
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 3.7e-86 322.4 298 59.4
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 8.2e-86 321.2 244 67.2
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 2.4e-85 319.7 236 66.9
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 4.1e-85 318.9 295 58.6
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 4.1e-85 318.9 278 62.6
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 1.2e-84 317.4 314 56.7
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 1.6e-84 317.0 303 58.4
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.6e-84 317.0 294 60.5
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 2.6e-84 316.2 244 64.3
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 1.0e-83 314.3 259 66.0
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 1.1e-82 310.8 247 64.8
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 9.4e-82 307.8 284 58.8
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 4.7e-81 305.4 252 61.1
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.0e-80 304.3 338 53.8
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.4e-80 303.9 290 57.6
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 1.8e-80 303.5 295 56.3
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 8.8e-80 301.2 310 56.1
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 7.5e-79 298.1 224 69.2
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 7.5e-79 298.1 341 53.1
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 1.3e-78 297.4 259 61.4
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.8e-78 296.2 243 62.6
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 6.3e-78 295.0 259 60.6
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 1.1e-77 294.3 225 64.4
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 1.4e-77 293.9 270 56.7
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 1.2e-76 290.8 240 63.8
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 1.2e-76 290.8 327 51.4
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 5.9e-76 288.5 252 60.3
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.1e-74 284.3 255 60.4
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 6.8e-72 275.0 256 58.6
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 2.0e-71 273.5 298 52.7
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 2.2e-70 270.0 296 51.4
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 5.0e-67 258.8 214 62.6
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 5.5e-66 255.4 220 65.0
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 6.1e-65 251.9 222 59.0
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 3.1e-61 239.6 251 49.4
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 5.0e-59 232.3 174 65.5
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.1e-58 231.1 244 46.7
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 2.0e-55 220.3 255 49.0
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 5.7e-55 218.8 220 57.3
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 1.3e-54 217.6 401 38.9
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 5.9e-52 208.8 190 64.2
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 5.0e-51 205.7 226 46.9
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 3.6e-49 199.5 235 45.1
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 3.7e-46 189.5 143 65.7
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 1.9e-45 187.2 313 42.2
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 7.8e-44 181.8 189 48.1
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 1.0e-43 181.4 131 71.0
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 3.2e-37 159.8 128 61.7
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 1.6e-25 120.9 118 51.7
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 2.2e-22 110.5 107 51.4
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 1.4e-21 107.8 73 78.1
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 1.6e-20 104.4 79 63.3
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 2.9e-14 83.6 70 58.6
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 2.4e-13 80.5 110 37.3
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.3e-11 74.7 194 33.5
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 1.8e-11 74.3 72 56.9
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 1.4e-08 64.7 51 62.7
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 3.1e-08 63.5 52 69.2
Hund21439 Selenicereus undatus HOM05D002234 ORTHO05D002254 6.9e-08 62.4 257 27.6
TAR375G0159 Trochodendron aralioides HOM05D002234 ORTHO05D002254 6.9e-08 62.4 202 29.2
BcaC09g49569 Brassica carinata HOM05D027121 ORTHO05D094000 1.5e-07 61.2 143 33.6
Aqoxy3G02205 Aquilegia oxysepala HOM05D002234 ORTHO05D002254 2.0e-07 60.8 200 28.5
HPP92_003058 Vanilla planifolia HOM05D002234 ORTHO05D002254 2.0e-07 60.8 215 26.5
CANSAT21G1663 Cannabis sativa HOM05D002234 ORTHO05D002254 3.4e-07 60.1 244 27.5
HanXRQChr16g0516891 Helianthus annuus HOM05D002234 ORTHO05D002254 1.3e-06 58.2 214 27.1
C01p35130 Brassica napus HOM05D027121 ORTHO05D039971 1.7e-06 57.8 102 36.3
VMungo1215G0334 Vigna mungo HOM05D002234 ORTHO05D002254 2.2e-06 57.4 240 28.3
TWI81G0224 Tripterygium wilfordii HOM05D002234 ORTHO05D002254 3.8e-06 56.6 196 30.1
GSVIVG01013072001 Vitis vinifera HOM05D002234 ORTHO05D002254 6.4e-06 55.8 202 27.7


User provided reference genes

Program Settings