Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s4301g0040 Pisum sativum HOM05D004524 ORTHO05D005477 0.0e+00 1929.5 964 100.0
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 0.0e+00 1456.4 911 80.4
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 0.0e+00 1387.1 903 78.0
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 0.0e+00 1203.0 901 67.3
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 0.0e+00 1138.3 823 71.6
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 0.0e+00 1132.9 918 63.1
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 0.0e+00 1131.7 901 63.3
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 1083.6 943 59.5
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 2.2e-289 999.2 901 57.2
arahy.Tifrunner.gnm1.ann1.Z7Z8T5 Arachis hypogaea HOM05D004524 ORTHO05D005477 1.1e-277 960.3 863 57.0
VMungo0251G3212 Vigna mungo HOM05D004524 ORTHO05D005477 3.7e-204 716.1 663 57.0
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 7.2e-184 648.7 938 39.1
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 1.7e-180 637.5 915 41.1
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 2.4e-171 607.1 913 39.1
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 1.3e-169 601.3 925 38.5
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 2.8e-167 593.6 938 38.3
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 3.0e-166 590.1 919 37.8
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 1.9e-160 570.9 978 35.5
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 6.2e-159 565.8 979 35.6
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 8.0e-159 565.5 979 35.6
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 1.1e-158 565.1 981 35.8
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 6.8e-158 562.4 926 36.2
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 4.4e-157 559.7 979 35.4
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 2.2e-156 557.4 925 36.6
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 9.5e-152 542.0 926 36.0
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 1.5e-149 534.6 919 35.4
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 3.4e-149 533.5 926 35.5
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 7.3e-144 515.8 921 35.1
Hma1.2p1_0261F.1_g105050 Hydrangea macrophylla HOM05D004524 ORTHO05D005477 2.1e-143 514.2 881 35.8
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 1.4e-142 511.5 933 34.4
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 3.1e-142 510.4 913 36.0
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 4.4e-141 506.5 925 34.3
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 1.7e-137 494.6 921 34.2
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 2.4e-134 484.2 920 34.2
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 1.9e-128 464.5 924 32.9
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 4.8e-127 459.9 918 33.0
Lj7A15G50 Lonicera japonica HOM05D004524 ORTHO05D005477 2.3e-121 441.0 881 33.0
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 9.0e-118 429.1 857 33.5
vmacro17890 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 9.0e-118 429.1 939 32.2
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 1.7e-116 424.9 919 31.7
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 5.5e-115 419.9 931 31.4
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 3.0e-113 414.1 926 30.5
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 8.7e-113 412.5 960 29.0
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 1.1e-112 412.1 949 30.7
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 2.5e-112 411.0 924 30.8
Nitab4.5_0000108g0190 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.5e-109 401.7 922 30.6
Nitab4.5_0001014g0150 Nicotiana tabacum HOM05D004524 ORTHO05D005477 5.8e-109 399.8 920 30.2
Eucgr.H01946 Eucalyptus grandis HOM05D004524 ORTHO05D005477 7.6e-109 399.4 853 32.1
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 7.1e-107 392.9 921 29.8
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 6.7e-105 386.3 913 28.9
Haze_15174 Corylus avellana HOM05D004524 ORTHO05D005477 4.3e-104 383.6 916 30.5
Peaxi162Scf00535g00736 Petunia axillaris HOM05D004524 ORTHO05D005477 4.3e-104 383.6 916 30.0
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 1.4e-102 378.6 937 30.3
CAN.G836.24 Capsicum annuum HOM05D004524 ORTHO05D005477 1.8e-102 378.3 936 29.3
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 6.9e-102 376.3 918 29.4
CARHR159890 Cardamine hirsuta HOM05D004524 ORTHO05D005477 6.9e-102 376.3 927 29.9
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 3.4e-101 374.0 923 29.0
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 1.0e-100 372.5 922 29.6
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 1.0e-100 372.5 922 29.6
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 8.5e-100 369.4 918 29.5
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 5.5e-99 366.7 922 28.9
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 1.2e-98 365.5 919 28.4
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 3.6e-98 364.0 928 28.8
Oeu032928.5 Olea europaea HOM05D004524 ORTHO05D005477 4.6e-98 363.6 919 29.1
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 2.3e-97 361.3 917 28.6
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 3.0e-97 360.9 938 28.6
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 3.9e-97 360.5 919 28.9
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 2.5e-96 357.8 913 28.0
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 2.5e-96 357.8 932 29.2
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 3.3e-96 357.5 925 29.3
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 2.2e-95 354.8 968 28.3
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 2.9e-92 344.4 923 28.3
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 1.1e-91 342.4 924 29.0
PGSC0003DMG400010031 Solanum tuberosum HOM05D004524 ORTHO05D005477 2.5e-91 341.3 895 28.6
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 4.2e-91 340.5 972 27.0
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 4.2e-91 340.5 975 27.3
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 7.4e-88 329.7 638 33.7
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 6.3e-87 326.6 923 27.4
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 8.2e-87 326.2 888 28.7
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 4.5e-85 320.5 925 27.7
Glyma.02G062000 Glycine max HOM05D004524 ORTHO05D005477 5.9e-85 320.1 275 58.5
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 9.4e-83 312.8 903 28.2
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 4.5e-77 293.9 939 25.3
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 2.5e-75 288.1 563 35.0
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 2.6e-72 278.1 919 25.8
arahy.Tifrunner.gnm1.ann1.Y36QTI Arachis hypogaea HOM05D004524 ORTHO05D005477 9.4e-67 259.6 235 52.8
AUR62027229 Chenopodium quinoa HOM05D004524 ORTHO05D005477 1.5e-64 252.3 753 27.1
Glyma.02G062100 Glycine max HOM05D004524 ORTHO05D005477 1.4e-62 245.7 203 59.1
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 3.4e-56 224.6 820 24.0
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 4.4e-48 197.6 954 23.4
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 3.2e-46 191.4 608 26.6
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 1.7e-39 169.1 935 22.8
HPP92_018739 Vanilla planifolia HOM05D004524 ORTHO05D005477 6.8e-33 147.1 751 22.2
Os12g0594200 Oryza sativa ssp. japonica HOM05D004524 ORTHO05D005477 8.3e-31 140.2 638 23.4
Cpa.g.sc15.83 Carica papaya HOM05D004524 ORTHO05D005477 5.6e-27 127.5 188 37.2
VMungo0720G0368 Vigna mungo HOM05D004524 ORTHO05D051592 1.6e-21 109.4 80 65.0
CDE01G0100 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 1.3e-20 106.3 558 22.2
Cpa.g.sc15.82 Carica papaya HOM05D004524 ORTHO05D005477 3.8e-15 88.2 189 32.3
COL.COLO4_22188 Corchorus olitorius HOM05D004524 ORTHO05D005477 2.1e-13 82.4 129 34.9
SEGI_30472 Sequoiadendron giganteum HOM05D004524 ORTHO05D037600 3.1e-09 68.6 222 22.1
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 1.1e-06 60.1 205 22.4
Psat4g008360 Pisum sativum HOM05D029785 ORTHO05D320305 5.4e-06 57.8 65 56.9


User provided reference genes

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