Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 1.4e-37 159.1 79 100.0
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 4.4e-23 110.9 53 100.0
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 6.6e-19 97.1 53 84.9
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 2.5e-18 95.1 81 67.9
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 5.6e-18 94.0 53 84.9
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 1.3e-17 92.8 53 83.0
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 3.6e-17 91.3 53 79.2
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 3.6e-17 91.3 53 81.1
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 1.1e-16 89.7 53 81.1
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 2.6e-15 85.1 54 72.2
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 2.6e-15 85.1 53 77.4
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 5.8e-15 84.0 53 75.5
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 9.9e-15 83.2 53 71.7
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 4.9e-14 80.9 53 73.6
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 4.9e-14 80.9 53 73.6
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 3.2e-13 78.2 53 66.0
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 1.2e-12 76.3 53 66.0
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 2.1e-12 75.5 53 62.3
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 2.7e-12 75.1 53 64.2
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 2.7e-12 75.1 51 64.7
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 2.7e-12 75.1 51 64.7
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 3.5e-12 74.7 53 64.2
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 4.6e-12 74.3 53 62.3
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 7.9e-12 73.6 51 62.7
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 7.9e-12 73.6 51 62.7
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 1.0e-11 73.2 51 66.7
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 1.8e-11 72.4 53 62.3
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 2.3e-11 72.0 52 61.5
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 2.3e-11 72.0 52 63.5
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 3.9e-11 71.2 53 60.4
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 5.1e-11 70.9 52 61.5
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 8.7e-11 70.1 51 58.8
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 8.7e-11 70.1 51 60.8
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 1.1e-10 69.7 51 58.8
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 1.1e-10 69.7 53 62.3
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 1.9e-10 68.9 51 58.8
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 1.9e-10 68.9 53 56.6
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 1.9e-10 68.9 51 54.9
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 2.5e-10 68.6 51 58.8
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 2.5e-10 68.6 51 58.8
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 2.5e-10 68.6 51 62.7
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 3.3e-10 68.2 51 56.9
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 4.3e-10 67.8 54 59.3
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 5.6e-10 67.4 51 58.8
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 5.6e-10 67.4 51 58.8
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 5.6e-10 67.4 51 60.8
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 9.6e-10 66.6 51 58.8
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 1.3e-09 66.2 53 56.6
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 1.3e-09 66.2 51 56.9
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 1.6e-09 65.9 51 56.9
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 1.6e-09 65.9 51 56.9
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 1.6e-09 65.9 53 56.6
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 1.6e-09 65.9 53 56.6
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 2.1e-09 65.5 48 64.6
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 2.1e-09 65.5 51 58.8
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 2.8e-09 65.1 51 56.9
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 2.8e-09 65.1 51 54.9
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 2.8e-09 65.1 54 57.4
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 3.7e-09 64.7 53 54.7
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 4.8e-09 64.3 51 58.8
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 4.8e-09 64.3 53 54.7
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 4.8e-09 64.3 53 54.7
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 6.2e-09 63.9 50 58.0
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 6.2e-09 63.9 54 57.4
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 6.2e-09 63.9 54 57.4
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 1.1e-08 63.2 52 51.9
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 1.4e-08 62.8 51 54.9
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 1.4e-08 62.8 51 54.9
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 1.4e-08 62.8 51 54.9
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 1.4e-08 62.8 51 56.9
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 1.8e-08 62.4 53 49.1
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 3.1e-08 61.6 49 59.2
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 3.1e-08 61.6 51 51.0
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 4.0e-08 61.2 51 56.9
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 5.3e-08 60.8 53 50.9
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 6.9e-08 60.5 51 52.9
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 6.9e-08 60.5 51 49.0
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.5e-07 59.3 51 52.9
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 3.4e-07 58.2 51 51.0
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 3.4e-07 58.2 52 50.0
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 7.6e-07 57.0 53 47.2
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 2.2e-06 55.5 51 47.1
Aa31LG4G730 Aethionema arabicum HOM05D000518 ORTHO05D000737 8.4e-06 53.5 49 59.2
A07p45210 Brassica napus HOM05D000518 ORTHO05D000737 8.4e-06 53.5 49 59.2
C06p54050 Brassica napus HOM05D000518 ORTHO05D000737 8.4e-06 53.5 49 59.2
BolC6t40418H Brassica oleracea HOM05D000518 ORTHO05D000737 8.4e-06 53.5 49 59.2
BraA07t32024Z Brassica rapa HOM05D000518 ORTHO05D000737 8.4e-06 53.5 49 59.2
CARHR073960 Cardamine hirsuta HOM05D000518 ORTHO05D000737 8.4e-06 53.5 49 59.2
ECA247G2223 Erigeron canadensis HOM05D000518 ORTHO05D000737 8.4e-06 53.5 49 59.2
HanXRQChr16g0500291 Helianthus annuus HOM05D000518 ORTHO05D000737 8.4e-06 53.5 49 59.2
Sp5g35350 Schrenkiella parvula HOM05D000518 ORTHO05D000737 8.4e-06 53.5 49 59.2


User provided reference genes

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