Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s4150g0200 Pisum sativum HOM05D002989 ORTHO05D003218 7.6e-68 260.4 133 100.0
TPR.G25700 Trifolium pratense HOM05D002989 ORTHO05D003218 9.8e-23 110.5 64 87.5
Medtr1g071370 Medicago truncatula HOM05D002989 ORTHO05D003218 1.1e-21 107.1 64 84.4
QL12p042063 Quercus lobata HOM05D002989 ORTHO05D003218 5.4e-21 104.8 64 78.1
Ca_09731_v3 Cicer arietinum L. HOM05D002989 ORTHO05D003218 1.2e-20 103.6 64 82.8
Atru.chr5.1517 Acer truncatum HOM05D002989 ORTHO05D003218 3.5e-20 102.1 64 76.6
Glyma.02G144500 Glycine max HOM05D002989 ORTHO05D003218 4.5e-20 101.7 64 81.2
Lj5g0006345 Lotus japonicus HOM05D002989 ORTHO05D003218 4.5e-20 101.7 64 78.1
Potri.005G214650 Populus trichocarpa HOM05D002989 ORTHO05D003218 4.5e-20 101.7 64 78.1
Sabra05G0164000 Salix brachista HOM05D002989 ORTHO05D003218 4.5e-20 101.7 64 78.1
CiPaw.08G108900 Carya illinoinensis HOM05D002989 ORTHO05D003218 1.0e-19 100.5 64 75.0
arahy.Tifrunner.gnm1.ann1.T1HKRS Arachis hypogaea HOM05D002989 ORTHO05D003218 1.3e-19 100.1 64 81.2
arahy.Tifrunner.gnm1.ann1.V0L3RT Arachis hypogaea HOM05D002989 ORTHO05D003218 1.3e-19 100.1 64 81.2
ECA247G3236 Erigeron canadensis HOM05D002989 ORTHO05D003218 1.3e-19 100.1 64 78.1
CSS0014533 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 1.7e-19 99.8 64 76.6
Phvul.007G174700 Phaseolus vulgaris HOM05D002989 ORTHO05D003218 1.7e-19 99.8 64 79.7
SalBow4G0275 Salvia bowleyana HOM05D002989 ORTHO05D003218 1.7e-19 99.8 66 74.2
MBI11_g09455_MAGBIO Magnolia biondii HOM05D002989 ORTHO05D003218 2.3e-19 99.4 64 76.6
MD03G1258500 Malus domestica HOM05D002989 ORTHO05D003218 2.3e-19 99.4 64 78.1
RcHm_v2.0_Chr6g0290051 Rosa chinensis HOM05D002989 ORTHO05D003218 2.3e-19 99.4 64 75.0
Cfa006196 Carpinus fangiana HOM05D002989 ORTHO05D003218 2.9e-19 99.0 64 73.4
Haze_04646 Corylus avellana HOM05D002989 ORTHO05D003218 2.9e-19 99.0 64 73.4
Actinidia24922 Actinidia chinensis HOM05D001150 ORTHO05D003218 3.8e-19 98.6 64 75.0
Manes.05G081600 Manihot esculenta HOM05D002989 ORTHO05D003218 3.8e-19 98.6 64 76.6
Nitab4.5_0003775g0010 Nicotiana tabacum HOM05D002989 ORTHO05D003218 3.8e-19 98.6 64 75.0
Prupe.8G235000 Prunus persica HOM05D002989 ORTHO05D003218 3.8e-19 98.6 64 76.6
HanXRQChr10g0281961 Helianthus annuus HOM05D002989 ORTHO05D003218 5.0e-19 98.2 64 76.6
Nitab4.5_0000459g0030 Nicotiana tabacum HOM05D002989 ORTHO05D003218 5.0e-19 98.2 64 75.0
Oeu025764.3 Olea europaea HOM05D002989 ORTHO05D003218 5.0e-19 98.2 64 75.0
VMungo0720G0840 Vigna mungo HOM05D002989 ORTHO05D003218 6.6e-19 97.8 64 78.1
GSVIVG01003117001 Vitis vinifera HOM05D002989 ORTHO05D003218 6.6e-19 97.8 64 76.6
FAN15G0470 Fragaria x ananassa HOM05D002989 ORTHO05D003218 1.5e-18 96.7 60 76.7
FAN20G1777 Fragaria x ananassa HOM05D002989 ORTHO05D003218 1.5e-18 96.7 64 73.4
FAN27G2040 Fragaria x ananassa HOM05D002989 ORTHO05D003218 1.5e-18 96.7 64 73.4
Rhsim01G0272200 Rhododendron simsii HOM05D002989 ORTHO05D003218 1.5e-18 96.7 66 77.3
TWI12G0259 Tripterygium wilfordii HOM05D002989 ORTHO05D003218 1.5e-18 96.7 60 73.3
Ah.11g050240 Amaranthus hybridus HOM05D002989 ORTHO05D003218 1.9e-18 96.3 64 75.0
Cpa.g.sc52.115 Carica papaya HOM05D002989 ORTHO05D003218 1.9e-18 96.3 64 76.6
Ciclev10018605m.g Citrus clementina HOM05D002989 ORTHO05D003218 2.5e-18 95.9 64 75.0
CsaV3_2G013890 Cucumis sativus L. HOM05D002989 ORTHO05D003218 2.5e-18 95.9 64 73.4
Duzib211G0299 Durio zibethinus HOM05D002989 ORTHO05D003218 2.5e-18 95.9 64 71.9
MSTRG.18266 Avicennia marina HOM05D002989 ORTHO05D003218 3.3e-18 95.5 64 71.9
Lsat_1_v5_gn_9_7440 Lactuca sativa HOM05D002989 ORTHO05D003218 3.3e-18 95.5 64 75.0
RcHm_v2.0_Chr3g0479641 Rosa chinensis HOM05D002989 ORTHO05D003218 3.3e-18 95.5 64 73.4
Thecc.01G272000 Theobroma cacao HOM05D002989 ORTHO05D003218 3.3e-18 95.5 64 71.9
CAN.G380.7 Capsicum annuum HOM05D002989 ORTHO05D003218 4.2e-18 95.1 64 71.9
Migut.D00359 Erythranthe guttata HOM05D002989 ORTHO05D003218 5.5e-18 94.7 64 70.3
Lalb_Chr21g0306351 Lupinus albus HOM05D002989 ORTHO05D003218 5.5e-18 94.7 64 75.0
Nn1g02454 Nelumbo nucifera HOM05D002989 ORTHO05D003218 5.5e-18 94.7 64 73.4
FvH4_2g23010 Fragaria vesca HOM05D002989 ORTHO05D003218 7.2e-18 94.4 64 71.9
Lj2C1165G7 Lonicera japonica HOM05D002989 ORTHO05D003218 7.2e-18 94.4 60 78.3
TAR362G0937 Trochodendron aralioides HOM05D002989 ORTHO05D003218 7.2e-18 94.4 61 78.7
EL10Ac5g10497 Beta vulgaris HOM05D002989 ORTHO05D003218 9.5e-18 94.0 64 71.9
CANSAT25G2944 Cannabis sativa HOM05D002989 ORTHO05D003218 9.5e-18 94.0 65 72.3
FAN24G2837 Fragaria x ananassa HOM05D002989 ORTHO05D003218 1.2e-17 93.6 64 70.3
Gohir.A08G045205 Gossypium hirsutum HOM05D002989 ORTHO05D003218 1.6e-17 93.2 64 68.8
Gorai.004G056100 Gossypium raimondii HOM05D002989 ORTHO05D003218 1.6e-17 93.2 64 68.8
Thhalv10005760m.g Eutrema salsugineum HOM05D002989 ORTHO05D003218 2.8e-17 92.4 62 72.6
Sp5g00200 Schrenkiella parvula HOM05D002989 ORTHO05D003218 2.8e-17 92.4 62 72.6
TAR365G0943 Trochodendron aralioides HOM05D002989 ORTHO05D003218 2.8e-17 92.4 64 70.3
AL5G46190 Arabidopsis lyrata HOM05D002989 ORTHO05D003218 3.6e-17 92.0 62 72.6
HanXRQChr09g0240651 Helianthus annuus HOM05D002989 ORTHO05D003218 3.6e-17 92.0 60 73.3
BcaB02g08065 Brassica carinata HOM05D002989 ORTHO05D003218 4.7e-17 91.7 62 71.0
Cc01_g19030 Coffea canephora HOM05D002989 ORTHO05D003218 4.7e-17 91.7 64 68.8
PGR044G1058 Punica granatum HOM05D002989 ORTHO05D003218 4.7e-17 91.7 64 70.3
PGR044G2467 Punica granatum HOM05D002989 ORTHO05D003218 4.7e-17 91.7 64 70.3
Sopen09g027400 Solanum pennellii HOM05D002989 ORTHO05D003218 4.7e-17 91.7 64 70.3
Aa31LG10G17170 Aethionema arabicum HOM05D002989 ORTHO05D003218 8.0e-17 90.9 64 68.8
HanXRQChr09g0240611 Helianthus annuus HOM05D002989 ORTHO05D003218 8.0e-17 90.9 60 73.3
PSO832G1612 Papaver somniferum HOM05D002989 ORTHO05D003218 1.0e-16 90.5 64 67.2
Sed0003144 Sechium edule HOM05D002989 ORTHO05D003218 1.0e-16 90.5 64 67.2
MELO3C014325.2 Cucumis melo HOM05D002989 ORTHO05D003218 1.4e-16 90.1 64 70.3
QL12p042129 Quercus lobata HOM05D000097 ORTHO05D003218 1.8e-16 89.7 65 69.2
Hund02863 Selenicereus undatus HOM05D002989 ORTHO05D003218 1.8e-16 89.7 64 68.8
CARHR291630 Cardamine hirsuta HOM05D002989 ORTHO05D003218 2.3e-16 89.4 62 71.0
unitig_0.g140 Utricularia gibba HOM05D002989 ORTHO05D003218 2.3e-16 89.4 86 55.8
Os11g0586100 Oryza sativa ssp. japonica HOM05D002989 ORTHO05D003218 4.0e-16 88.6 64 68.8
Aqoxy7G03495 Aquilegia oxysepala HOM05D002989 ORTHO05D003218 5.2e-16 88.2 66 68.2
MD00G1147300 Malus domestica HOM05D002989 ORTHO05D003218 5.2e-16 88.2 65 69.2
MD08G1204000 Malus domestica HOM05D002989 ORTHO05D003218 5.2e-16 88.2 65 69.2
THA.LOC104809895 Tarenaya hassleriana HOM05D002989 ORTHO05D003218 5.2e-16 88.2 60 71.7
SGA_v2.0_scaffold1G00532 Striga asiatica HOM05D002989 ORTHO05D003218 6.8e-16 87.8 64 67.2
AT3G63340 Arabidopsis thaliana HOM05D002989 ORTHO05D003218 8.9e-16 87.4 63 68.3
AUR62032285 Chenopodium quinoa HOM05D002989 ORTHO05D003218 8.9e-16 87.4 66 66.7
TAR365G0266 Trochodendron aralioides HOM05D002989 ORTHO05D003218 8.9e-16 87.4 75 57.3
A04p00100 Brassica napus HOM05D002989 ORTHO05D003218 1.2e-15 87.0 63 69.8
C04p29910 Brassica napus HOM05D002989 ORTHO05D003218 1.2e-15 87.0 63 69.8
BolC4t24522H Brassica oleracea HOM05D002989 ORTHO05D003218 1.2e-15 87.0 63 69.8
BraA04t15730Z Brassica rapa HOM05D002989 ORTHO05D003218 1.2e-15 87.0 63 69.8
Sc17g0001190 Simmondsia chinensis HOM05D002989 ORTHO05D003218 1.2e-15 87.0 64 65.6
ClCG07G000490 Citrullus lanatus HOM05D002989 ORTHO05D003218 2.6e-15 85.9 88 54.5
Sp5g00210 Schrenkiella parvula HOM05D002989 ORTHO05D003218 2.6e-15 85.9 66 66.7
AL5G46180 Arabidopsis lyrata HOM05D002989 ORTHO05D003218 3.4e-15 85.5 68 66.2
MD00G1147800 Malus domestica HOM05D002989 ORTHO05D003218 3.4e-15 85.5 65 66.2
HPP92_020349 Vanilla planifolia HOM05D002989 ORTHO05D003218 3.4e-15 85.5 60 68.3
Carub.0005s2998 Capsella rubella HOM05D002989 ORTHO05D003218 4.4e-15 85.1 62 67.7
Lsat_1_v5_gn_9_7521 Lactuca sativa HOM05D002989 ORTHO05D003218 5.7e-15 84.7 59 69.5
vmacro14890 Vaccinium macrocarpon HOM05D002989 ORTHO05D003218 7.5e-15 84.3 96 52.1
ATR0665G490 Amborella trichopoda HOM05D002989 ORTHO05D003218 9.8e-15 84.0 64 64.1
Lj2C1165T16 Lonicera japonica HOM05D002989 ORTHO05D003218 2.7e-12 75.9 89 46.1
Actinidia21825 Actinidia chinensis HOM05D002989 ORTHO05D003218 1.3e-11 73.6 64 57.8
QL12p042048 Quercus lobata HOM05D002989 ORTHO05D003218 1.3e-11 73.6 65 55.4
Cfa006195 Carpinus fangiana HOM05D002989 ORTHO05D003218 2.3e-11 72.8 66 56.1
MD00G1147600 Malus domestica HOM05D002989 ORTHO05D003218 2.9e-11 72.4 59 66.1
TWI60G1134 Tripterygium wilfordii HOM05D002989 ORTHO05D003218 2.9e-11 72.4 77 50.6
Ciclev10023714m.g Citrus clementina HOM05D002989 ORTHO05D003218 5.0e-11 71.6 89 48.3
TWI60G0894 Tripterygium wilfordii HOM05D002989 ORTHO05D003218 5.0e-11 71.6 61 59.0
Duzib114G0118 Durio zibethinus HOM05D002989 ORTHO05D003218 6.6e-11 71.2 75 50.7
SalBow4G0873 Salvia bowleyana HOM05D002989 ORTHO05D003218 6.6e-11 71.2 74 44.6
vmacro02612 Vaccinium macrocarpon HOM05D002989 ORTHO05D003218 6.6e-11 71.2 69 55.1
DCAR_012504 Daucus carota HOM05D002989 ORTHO05D003218 8.6e-11 70.9 64 54.7
QL12p042043 Quercus lobata HOM05D002989 ORTHO05D003218 8.6e-11 70.9 66 56.1
Rhsim13G0028600 Rhododendron simsii HOM05D002989 ORTHO05D003218 8.6e-11 70.9 66 54.5
Haze_04649 Corylus avellana HOM05D002989 ORTHO05D003218 1.5e-10 70.1 66 54.5
Migut.D00361 Erythranthe guttata HOM05D002989 ORTHO05D003218 1.9e-10 69.7 64 51.6
Cc01_g19040 Coffea canephora HOM05D002989 ORTHO05D003218 2.5e-10 69.3 65 55.4
Sopen06g035490 Solanum pennellii HOM05D002989 ORTHO05D003218 3.3e-10 68.9 66 53.0
Nitab4.5_0002266g0120 Nicotiana tabacum HOM05D002989 ORTHO05D003218 4.3e-10 68.6 62 59.7
Potri.005G214500 Populus trichocarpa HOM05D002989 ORTHO05D003218 4.3e-10 68.6 69 50.7
Rhsim01G0068400 Rhododendron simsii HOM05D002989 ORTHO05D003218 4.3e-10 68.6 66 53.0
Actinidia19960 Actinidia chinensis HOM05D002989 ORTHO05D003218 7.3e-10 67.8 66 53.0
AUR62032286 Chenopodium quinoa HOM05D002989 ORTHO05D003218 9.5e-10 67.4 66 53.0
Nitab4.5_0004086g0050 Nicotiana tabacum HOM05D002989 ORTHO05D003218 9.5e-10 67.4 62 59.7
Oeu052360.1 Olea europaea HOM05D002989 ORTHO05D003218 9.5e-10 67.4 73 49.3
CSS0037436 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 1.2e-09 67.0 66 51.5
Sabra05G0163900 Salix brachista HOM05D002989 ORTHO05D003218 1.2e-09 67.0 61 54.1
PGSC0003DMG402020059 Solanum tuberosum HOM05D002989 ORTHO05D003218 1.2e-09 67.0 66 51.5
Manes.01G204300 Manihot esculenta HOM05D002989 ORTHO05D003218 1.6e-09 66.6 68 52.9
Nitab4.5_0002380g0050 Nicotiana tabacum HOM05D002989 ORTHO05D003218 1.6e-09 66.6 57 59.6
GSVIVG01003115001 Vitis vinifera HOM05D002989 ORTHO05D003218 3.6e-09 65.5 67 52.2
Nitab4.5_0001044g0020 Nicotiana tabacum HOM05D002989 ORTHO05D003218 6.1e-09 64.7 66 50.0
Medtr3g435230 Medicago truncatula HOM05D002750 ORTHO05D002961 1.4e-08 63.5 50 66.0
unitig_0.g137 Utricularia gibba HOM05D002989 ORTHO05D003218 1.4e-08 63.5 60 53.3
COL.COLO4_09194 Corchorus olitorius HOM05D002989 ORTHO05D003218 2.3e-08 62.8 42 76.2
Psat5g201120 Pisum sativum HOM05D002750 ORTHO05D002961 2.3e-08 62.8 61 54.1
Nitab4.5_0013316g0010 Nicotiana tabacum HOM05D002989 ORTHO05D003218 3.1e-08 62.4 83 42.2
Nitab4.5_0000172g2190 Nicotiana tabacum HOM05D002989 ORTHO05D003218 8.9e-08 60.8 60 51.7
TPR.G11961 Trifolium pratense HOM05D002750 ORTHO05D002961 8.9e-08 60.8 50 62.0
Atru.chr5.1516 Acer truncatum HOM05D002989 ORTHO05D003218 2.0e-07 59.7 63 52.4
Ca_25963_v3 Cicer arietinum L. HOM05D002750 ORTHO05D002961 3.4e-07 58.9 45 62.2
Medtr3g435250 Medicago truncatula HOM05D002750 ORTHO05D002961 3.4e-07 58.9 50 58.0
PGSC0003DMG400030387 Solanum tuberosum HOM05D002989 ORTHO05D003218 4.4e-07 58.5 60 48.3
MSTRG.21529 Avicennia marina HOM05D002989 ORTHO05D003218 5.8e-07 58.2 59 45.8
Medtr3g435200 Medicago truncatula HOM05D002750 ORTHO05D002961 5.8e-07 58.2 50 56.0
HanXRQChr11g0338821 Helianthus annuus HOM05D002989 ORTHO05D003218 7.5e-07 57.8 59 45.8
Zm00001eb114480 Zea mays HOM05D002989 ORTHO05D003218 9.8e-07 57.4 53 60.4
HanXRQChr09g0240711 Helianthus annuus HOM05D002989 ORTHO05D003218 1.7e-06 56.6 38 76.3
Lsat_1_v5_gn_5_185781 Lactuca sativa HOM05D002989 ORTHO05D003218 2.2e-06 56.2 93 35.5
Medtr3g435170 Medicago truncatula HOM05D002750 ORTHO05D002961 2.2e-06 56.2 50 58.0
Psat5g200840 Pisum sativum HOM05D002750 ORTHO05D002961 4.9e-06 55.1 61 52.5
EL10Ac5g10495 Beta vulgaris HOM05D002989 ORTHO05D003218 6.4e-06 54.7 42 66.7
THA.LOC104813803 Tarenaya hassleriana HOM05D002989 ORTHO05D003218 6.4e-06 54.7 57 45.6


User provided reference genes

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