Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s4061g0240 Pisum sativum HOM05D003516 ORTHO05D004068 8.6e-131 470.3 235 100.0
Medtr7g011890 Medicago truncatula HOM05D003516 ORTHO05D004068 5.8e-111 404.4 233 87.1
TPR.G33465 Trifolium pratense HOM05D003516 ORTHO05D004068 4.1e-109 398.3 233 85.4
Lj1g0021677 Lotus japonicus HOM05D003516 ORTHO05D004068 2.7e-108 395.6 223 85.2
Ca_04330_v3 Cicer arietinum L. HOM05D003516 ORTHO05D004068 8.1e-105 384.0 223 85.2
arahy.Tifrunner.gnm1.ann1.0J6LH7 Arachis hypogaea HOM05D003516 ORTHO05D004068 2.0e-103 379.4 230 80.9
VMungo1383G2485 Vigna mungo HOM05D003516 ORTHO05D004068 2.2e-102 375.9 223 81.2
Glyma.08G241300 Glycine max HOM05D003516 ORTHO05D004068 1.4e-101 373.2 233 79.8
Phvul.008G040100 Phaseolus vulgaris HOM05D003516 ORTHO05D004068 2.1e-100 369.4 233 78.5
RcHm_v2.0_Chr2g0166731 Rosa chinensis HOM05D003516 ORTHO05D004068 1.3e-97 360.1 223 78.0
FAN05G5016 Fragaria x ananassa HOM05D003516 ORTHO05D004068 1.8e-96 356.3 223 75.8
Lj4A115T83 Lonicera japonica HOM05D003516 ORTHO05D004068 1.8e-96 356.3 221 76.9
FAN09G4649 Fragaria x ananassa HOM05D003516 ORTHO05D004068 1.5e-95 353.2 223 75.3
PSO675G4642 Papaver somniferum HOM05D003516 ORTHO05D004068 1.5e-95 353.2 224 75.4
RcHm_v2.0_Chr2g0166761 Rosa chinensis HOM05D003516 ORTHO05D004068 1.5e-95 353.2 223 75.3
Dinv11492 Davidia involucrata HOM05D003516 ORTHO05D004068 2.0e-95 352.8 223 74.9
FvH4_6g47610 Fragaria vesca HOM05D003516 ORTHO05D004068 2.0e-95 352.8 223 74.9
Ah.12g062520 Amaranthus hybridus HOM05D003516 ORTHO05D004068 3.4e-95 352.1 223 75.3
Atru.chr2.3146 Acer truncatum HOM05D003516 ORTHO05D004068 4.4e-95 351.7 223 75.8
CSS0008989 Camellia sinensis var. sinensis HOM05D003516 ORTHO05D004068 5.8e-95 351.3 223 74.4
CiPaw.03G092000 Carya illinoinensis HOM05D003516 ORTHO05D004068 5.8e-95 351.3 223 74.4
Ciclev10011701m.g Citrus clementina HOM05D003516 ORTHO05D004068 7.6e-95 350.9 223 74.4
Lalb_Chr17g0337081 Lupinus albus HOM05D003516 ORTHO05D004068 7.6e-95 350.9 223 76.2
vmacro05670 Vaccinium macrocarpon HOM05D003516 ORTHO05D004068 1.3e-94 350.1 233 74.7
Cfa007618 Carpinus fangiana HOM05D003516 ORTHO05D004068 1.7e-94 349.7 224 75.0
CAN.G206.192 Capsicum annuum HOM05D003516 ORTHO05D004068 2.2e-94 349.4 223 75.3
TPR.G26192 Trifolium pratense HOM05D003516 ORTHO05D004068 2.2e-94 349.4 223 75.3
FvH4_6g47700 Fragaria vesca HOM05D003516 ORTHO05D004068 3.8e-94 348.6 223 75.3
Rhsim10G0034300 Rhododendron simsii HOM05D003516 ORTHO05D004068 3.8e-94 348.6 233 74.2
Solyc02g088490.3 Solanum lycopersicum HOM05D003516 ORTHO05D004068 3.8e-94 348.6 223 74.0
Sopen02g033200 Solanum pennellii HOM05D003516 ORTHO05D004068 3.8e-94 348.6 223 74.0
PSO541G0811 Papaver somniferum HOM05D003516 ORTHO05D004068 4.9e-94 348.2 224 73.7
Prupe.3G260300 Prunus persica HOM05D003516 ORTHO05D004068 4.9e-94 348.2 226 76.1
Eucgr.J01366 Eucalyptus grandis HOM05D003516 ORTHO05D004068 8.4e-94 347.4 223 71.3
Lj2g0008898 Lotus japonicus HOM05D003516 ORTHO05D004068 8.4e-94 347.4 233 75.1
Peaxi162Scf00166g00944 Petunia axillaris HOM05D003516 ORTHO05D004068 8.4e-94 347.4 223 74.0
RcHm_v2.0_Chr2g0166771 Rosa chinensis HOM05D003516 ORTHO05D004068 8.4e-94 347.4 223 75.8
Nitab4.5_0008573g0050 Nicotiana tabacum HOM05D003516 ORTHO05D004068 1.1e-93 347.1 223 73.5
QL02p039347 Quercus lobata HOM05D003516 ORTHO05D004068 1.1e-93 347.1 235 74.0
FvH4_6g47650 Fragaria vesca HOM05D003516 ORTHO05D004068 1.4e-93 346.7 223 74.9
FAN14G0784 Fragaria x ananassa HOM05D003516 ORTHO05D004068 1.4e-93 346.7 223 74.9
PGSC0003DMG401001347 Solanum tuberosum HOM05D003516 ORTHO05D004068 1.9e-93 346.3 223 73.5
TAR371G1100 Trochodendron aralioides HOM05D003516 ORTHO05D004068 1.9e-93 346.3 223 74.9
Glyma.13G059300 Glycine max HOM05D003516 ORTHO05D004068 2.4e-93 345.9 233 73.0
Manes.01G099500 Manihot esculenta HOM05D003516 ORTHO05D004068 3.2e-93 345.5 223 73.5
Nitab4.5_0000565g0050 Nicotiana tabacum HOM05D003516 ORTHO05D004068 3.2e-93 345.5 223 73.1
FAN14G3818 Fragaria x ananassa HOM05D003516 ORTHO05D004068 4.2e-93 345.1 223 74.4
TAR371G0601 Trochodendron aralioides HOM05D003516 ORTHO05D004068 4.2e-93 345.1 223 74.4
TWI34G1153 Tripterygium wilfordii HOM05D003516 ORTHO05D004068 5.4e-93 344.7 230 72.2
PGSC0003DMG402001347 Solanum tuberosum HOM05D003516 ORTHO05D004068 7.1e-93 344.4 223 74.0
TAR371G1088 Trochodendron aralioides HOM05D003516 ORTHO05D004068 1.2e-92 343.6 223 74.4
TWI34G0121 Tripterygium wilfordii HOM05D003516 ORTHO05D004068 1.6e-92 343.2 230 71.3
COL.COLO4_12254 Corchorus olitorius HOM05D003516 ORTHO05D004068 3.5e-92 342.0 235 73.2
Sabra04G0066900 Salix brachista HOM05D003516 ORTHO05D004068 3.5e-92 342.0 223 74.0
DCAR_011066 Daucus carota HOM05D003516 ORTHO05D004068 4.6e-92 341.7 230 71.3
MD09G1060600 Malus domestica HOM05D003516 ORTHO05D004068 7.9e-92 340.9 221 75.1
Potri.004G126100 Populus trichocarpa HOM05D003516 ORTHO05D004068 7.9e-92 340.9 223 72.6
Hund15565 Selenicereus undatus HOM05D003516 ORTHO05D004068 1.3e-91 340.1 218 74.8
Nitab4.5_0000565g0040 Nicotiana tabacum HOM05D003516 ORTHO05D004068 1.7e-91 339.7 221 71.9
MBI19_g41331_MAGBIO Magnolia biondii HOM05D003516 ORTHO05D004068 2.3e-91 339.3 223 72.2
Carub.0007s3653 Capsella rubella HOM05D003516 ORTHO05D004068 5.1e-91 338.2 226 70.8
Actinidia01972 Actinidia chinensis HOM05D003516 ORTHO05D004068 1.1e-90 337.0 223 73.5
Cpa.g.sc14.137 Carica papaya HOM05D003516 ORTHO05D004068 1.5e-90 336.7 223 71.7
Thecc.04G089600 Theobroma cacao HOM05D003516 ORTHO05D004068 1.9e-90 336.3 223 74.9
Medtr4g094268 Medicago truncatula HOM05D003516 ORTHO05D004068 2.5e-90 335.9 223 73.1
MELO3C009836.2 Cucumis melo HOM05D003516 ORTHO05D004068 3.3e-90 335.5 223 72.2
Nn4g23326 Nelumbo nucifera HOM05D003516 ORTHO05D004068 3.3e-90 335.5 224 71.0
Sc14g0006110 Simmondsia chinensis HOM05D003516 ORTHO05D004068 3.3e-90 335.5 223 70.4
Aa31LG9G16580 Aethionema arabicum HOM05D003516 ORTHO05D004068 5.6e-90 334.7 223 72.2
Nitab4.5_0003216g0010 Nicotiana tabacum HOM05D003516 ORTHO05D004068 7.4e-90 334.3 221 71.0
EL10Ac2g03040 Beta vulgaris HOM05D003516 ORTHO05D004068 9.6e-90 334.0 223 73.1
Ca_04865_v3 Cicer arietinum L. HOM05D003516 ORTHO05D004068 1.3e-89 333.6 233 72.1
Lalb_Chr02g0159071 Lupinus albus HOM05D003516 ORTHO05D004068 1.3e-89 333.6 223 73.5
Lsat_1_v5_gn_2_87981 Lactuca sativa HOM05D003516 ORTHO05D004068 1.6e-89 333.2 223 70.4
BcaB06g27324 Brassica carinata HOM05D003516 ORTHO05D004068 2.1e-89 332.8 223 70.0
AL7G50920 Arabidopsis lyrata HOM05D003516 ORTHO05D004068 3.6e-89 332.0 226 69.9
arahy.Tifrunner.gnm1.ann1.BNNE9K Arachis hypogaea HOM05D003516 ORTHO05D004068 3.6e-89 332.0 223 72.2
AT5G39410 Arabidopsis thaliana HOM05D003516 ORTHO05D004068 4.8e-89 331.6 226 69.9
Hma1.2p1_0255F.1_g103250 Hydrangea macrophylla HOM05D003516 ORTHO05D004068 4.8e-89 331.6 223 71.3
Phvul.004G033000 Phaseolus vulgaris HOM05D003516 ORTHO05D004068 4.8e-89 331.6 235 70.6
VMungo0464G1139 Vigna mungo HOM05D003516 ORTHO05D004068 4.8e-89 331.6 235 70.6
C04p45730 Brassica napus HOM05D003516 ORTHO05D004068 6.2e-89 331.3 223 70.0
BcaB06g27298 Brassica carinata HOM05D003516 ORTHO05D004068 8.1e-89 330.9 223 70.0
BolC4t26158H Brassica oleracea HOM05D003516 ORTHO05D004068 8.1e-89 330.9 223 70.0
BraA04t16875Z Brassica rapa HOM05D003516 ORTHO05D004068 8.1e-89 330.9 223 70.0
Duzib264G1026 Durio zibethinus HOM05D003516 ORTHO05D004068 8.1e-89 330.9 223 73.5
Thhalv10027760m.g Eutrema salsugineum HOM05D003516 ORTHO05D004068 1.1e-88 330.5 226 69.0
Psat1g069160 Pisum sativum HOM05D003516 ORTHO05D004068 1.1e-88 330.5 224 71.9
arahy.Tifrunner.gnm1.ann1.3ST4SV Arachis hypogaea HOM05D003516 ORTHO05D004068 1.8e-88 329.7 223 71.7
Nitab4.5_0008573g0020 Nicotiana tabacum HOM05D003516 ORTHO05D004068 1.8e-88 329.7 223 69.5
Gohir.D04G045800 Gossypium hirsutum HOM05D003516 ORTHO05D004068 4.0e-88 328.6 223 73.5
AUR62018134 Chenopodium quinoa HOM05D003516 ORTHO05D004068 6.9e-88 327.8 233 68.7
Nn4g23324 Nelumbo nucifera HOM05D003516 ORTHO05D004068 9.0e-88 327.4 215 70.7
SalBow1G1268 Salvia bowleyana HOM05D003516 ORTHO05D004068 9.0e-88 327.4 233 67.0
SalBow1G1829 Salvia bowleyana HOM05D003516 ORTHO05D004068 9.0e-88 327.4 233 67.0
Gorai.012G051000 Gossypium raimondii HOM05D003516 ORTHO05D004068 1.5e-87 326.6 223 73.1
A04p12100 Brassica napus HOM05D003516 ORTHO05D004068 2.0e-87 326.2 224 69.6
Sp7g02570 Schrenkiella parvula HOM05D003516 ORTHO05D004068 4.5e-87 325.1 226 67.7
Sopen02g033240 Solanum pennellii HOM05D003516 ORTHO05D004068 4.5e-87 325.1 223 70.4
AUR62034468 Chenopodium quinoa HOM05D003516 ORTHO05D004068 5.8e-87 324.7 233 68.2
Cc07_g03810 Coffea canephora HOM05D003516 ORTHO05D004068 5.8e-87 324.7 223 67.7
CsaV3_3G041030 Cucumis sativus L. HOM05D003516 ORTHO05D004068 5.8e-87 324.7 218 72.5
Nn4g23327 Nelumbo nucifera HOM05D003516 ORTHO05D004068 5.8e-87 324.7 224 70.1
Aqoxy3G03552 Aquilegia oxysepala HOM05D003516 ORTHO05D004068 2.2e-86 322.8 223 70.0
Gohir.A05G369500 Gossypium hirsutum HOM05D003516 ORTHO05D004068 2.9e-86 322.4 232 69.8
Atru.chr2.2165 Acer truncatum HOM05D003516 ORTHO05D004068 3.8e-86 322.0 223 68.6
PGSC0003DMG400001348 Solanum tuberosum HOM05D003516 ORTHO05D004068 6.4e-86 321.2 224 69.6
SGA_v2.0_scaffold4G02421 Striga asiatica HOM05D003516 ORTHO05D004068 8.4e-86 320.9 234 66.2
MSTRG.23906 Avicennia marina HOM05D003516 ORTHO05D004068 1.1e-85 320.5 233 67.0
ECA238G0029 Erigeron canadensis HOM05D003516 ORTHO05D004068 1.4e-85 320.1 223 69.1
CAN.G206.193 Capsicum annuum HOM05D003516 ORTHO05D004068 1.9e-85 319.7 217 70.0
ECA238G2285 Erigeron canadensis HOM05D003516 ORTHO05D004068 2.4e-85 319.3 223 68.2
HanXRQChr14g0448681 Helianthus annuus HOM05D003516 ORTHO05D004068 2.4e-85 319.3 223 67.7
Migut.H00662 Erythranthe guttata HOM05D003516 ORTHO05D004068 4.2e-85 318.5 227 66.1
THA.LOC104823897 Tarenaya hassleriana HOM05D003516 ORTHO05D004068 5.5e-85 318.2 224 68.3
AUR62034473 Chenopodium quinoa HOM05D003516 ORTHO05D004068 2.7e-84 315.8 223 69.1
MSTRG.3024 Avicennia marina HOM05D003516 ORTHO05D004068 3.5e-84 315.5 233 67.4
CARHR262950 Cardamine hirsuta HOM05D003516 ORTHO05D004068 1.0e-83 313.9 223 68.2
ATR0111G016 Amborella trichopoda HOM05D003516 ORTHO05D004068 1.5e-82 310.1 228 64.5
Os07g0597100 Oryza sativa ssp. japonica HOM05D003516 ORTHO05D004068 9.6e-82 307.4 212 66.0
HPP92_023641 Vanilla planifolia HOM05D003516 ORTHO05D004068 3.7e-81 305.4 223 66.8
CDE04G1400 Ceratophyllum demersum HOM05D003516 ORTHO05D004068 6.2e-81 304.7 223 63.2
unitig_744.g24003 Utricularia gibba HOM05D003516 ORTHO05D004068 6.2e-81 304.7 223 63.7
HPP92_023623 Vanilla planifolia HOM05D003516 ORTHO05D004068 2.4e-80 302.8 223 66.4
GSVIVG01011482001 Vitis vinifera HOM05D003516 ORTHO05D004068 2.6e-79 299.3 223 67.7
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 3.4e-79 298.9 200 73.5
HanXRQChr14g0448661 Helianthus annuus HOM05D003516 ORTHO05D004068 2.2e-78 296.2 223 65.0
HanXRQChr17g0546731 Helianthus annuus HOM05D003516 ORTHO05D004068 8.4e-78 294.3 223 62.8
ECA238G1443 Erigeron canadensis HOM05D003516 ORTHO05D004068 1.4e-77 293.5 224 64.7
HPP92_020419 Vanilla planifolia HOM05D003516 ORTHO05D004068 7.1e-77 291.2 223 64.1
Lsat_1_v5_gn_2_88001 Lactuca sativa HOM05D003516 ORTHO05D004068 1.2e-76 290.4 223 63.2
Zm00001eb326640 Zea mays HOM05D003516 ORTHO05D004068 1.0e-75 287.3 223 63.2
ClCG10G015460 Citrullus lanatus HOM05D003516 ORTHO05D004068 1.3e-75 287.0 228 62.7
Lsat_1_v5_gn_2_88041 Lactuca sativa HOM05D003516 ORTHO05D004068 3.9e-75 285.4 224 62.9
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 3.7e-73 278.9 195 70.8
PGSC0003DMG400001349 Solanum tuberosum HOM05D003516 ORTHO05D004068 3.7e-73 278.9 223 63.2
SEGI_01701 Sequoiadendron giganteum HOM05D003516 ORTHO05D004068 8.2e-73 277.7 232 56.5
CsaV3_3G041020 Cucumis sativus L. HOM05D003516 ORTHO05D004068 2.0e-71 273.1 223 60.5
Psat7g019480 Pisum sativum HOM05D003516 ORTHO05D004068 2.2e-70 269.6 136 97.8
MELO3C009835.2 Cucumis melo HOM05D003516 ORTHO05D004068 3.3e-66 255.8 221 57.9
SEGI_26660 Sequoiadendron giganteum HOM05D003516 ORTHO05D004068 1.4e-64 250.4 232 54.7
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 4.1e-64 248.8 169 71.0
Pp3c7_23970 Physcomitrium patens HOM05D003516 ORTHO05D004068 7.4e-58 228.0 223 54.3
Mapoly0061s0022 Marchantia polymorpha HOM05D003516 ORTHO05D004068 6.9e-56 221.5 224 47.8
Sed0002556 Sechium edule HOM05D003516 ORTHO05D004068 2.2e-54 216.5 208 55.8
HanXRQChr14g0448671 Helianthus annuus HOM05D003516 ORTHO05D004068 8.5e-54 214.5 192 58.3
PGR056G0004 Punica granatum HOM05D003516 ORTHO05D004068 2.5e-53 213.0 139 74.8
SMO364G0897 Selaginella moellendorffii HOM05D003516 ORTHO05D004068 4.2e-53 212.2 224 47.3
Psat3g198560 Pisum sativum HOM05D003516 ORTHO05D004068 3.0e-51 206.1 118 89.0
AagrBONN_evm.TU.Sc2ySwM_228.5734 Anthoceros agrestis HOM05D003516 ORTHO05D004068 5.1e-51 205.3 228 43.9
SalBow1G7786 Salvia bowleyana HOM05D003516 ORTHO05D004068 8.8e-51 204.5 131 72.5
Psat3g198720 Pisum sativum HOM05D003516 ORTHO05D004068 2.6e-47 193.0 98 95.9
Lsat_1_v5_gn_3_88480 Lactuca sativa HOM05D003516 ORTHO05D004068 2.2e-46 189.9 147 63.9
AagrBONN_evm.TU.Sc2ySwM_369.232 Anthoceros agrestis HOM05D003516 ORTHO05D004068 2.7e-44 183.0 222 43.2
SEGI_25923 Sequoiadendron giganteum HOM05D003516 ORTHO05D004068 1.2e-39 167.5 156 54.5
SMO364G0931 Selaginella moellendorffii HOM05D003516 ORTHO05D004068 1.8e-35 153.7 206 42.2
CSS0008212 Camellia sinensis var. sinensis HOM05D003516 ORTHO05D004068 3.0e-35 152.9 108 66.7
Pp3c2_35640 Physcomitrium patens HOM05D003516 ORTHO05D004068 2.6e-34 149.8 171 44.4
AagrBONN_evm.TU.Sc2ySwM_344.722 Anthoceros agrestis HOM05D003516 ORTHO05D004068 9.8e-34 147.9 229 37.6
Lsat_1_v5_gn_7_15281 Lactuca sativa HOM05D003516 ORTHO05D004068 2.7e-31 139.8 130 55.4
RcHm_v2.0_Chr4g0415101 Rosa chinensis HOM05D003516 ORTHO05D004068 1.5e-26 124.0 93 64.5
PRCOL_00005991 Prasinoderma coloniale HOM05D003516 ORTHO05D004068 1.1e-16 91.3 209 27.3
SalBow1G7636 Salvia bowleyana HOM05D003516 ORTHO05D004068 1.8e-16 90.5 66 65.2
Actinidia01964 Actinidia chinensis HOM05D003516 ORTHO05D004068 5.0e-14 82.4 49 79.6
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 2.1e-12 77.0 56 67.9
RcHm_v2.0_Chr4g0415091 Rosa chinensis HOM05D003516 ORTHO05D004068 3.6e-12 76.3 53 71.7
Lsat_1_v5_gn_4_58340 Lactuca sativa HOM05D003516 ORTHO05D004068 1.2e-10 71.2 48 70.8
SalBow8G2541 Salvia bowleyana HOM05D003516 ORTHO05D004068 1.3e-09 67.8 38 78.9
Medtr5g064760 Medicago truncatula HOM05D003516 ORTHO05D004068 2.7e-07 60.1 46 54.3


User provided reference genes

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