Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s3959g0040 Pisum sativum HOM05D002551 ORTHO05D002832 7.4e-92 340.5 169 100.0
Psat5g199920 Pisum sativum HOM05D002551 ORTHO05D002832 1.7e-40 169.9 153 63.4
Psat0s5g0160 Pisum sativum HOM05D002551 ORTHO05D002832 6.6e-40 167.9 143 66.4
Psat0s4851g0160 Pisum sativum HOM05D002551 ORTHO05D002832 3.3e-39 165.6 153 62.1
Psat5g216000 Pisum sativum HOM05D002551 ORTHO05D002832 3.3e-39 165.6 156 62.2
TPR.G21111 Trifolium pratense HOM05D002551 ORTHO05D002832 8.3e-35 151.0 153 56.2
TPR.G30360 Trifolium pratense HOM05D002551 ORTHO05D002832 1.2e-33 147.1 153 54.2
Medtr7g079770 Medicago truncatula HOM05D002551 ORTHO05D002832 5.9e-33 144.8 143 55.2
Medtr7g079820 Medicago truncatula HOM05D002551 ORTHO05D002832 3.9e-32 142.1 143 55.2
Medtr1g103400 Medicago truncatula HOM05D002551 ORTHO05D002832 2.5e-31 139.4 154 50.0
TPR.G20826 Trifolium pratense HOM05D002551 ORTHO05D002832 3.3e-31 139.0 143 56.6
TPR.G36160 Trifolium pratense HOM05D002551 ORTHO05D002832 9.5e-31 137.5 143 55.2
Medtr7g079740 Medicago truncatula HOM05D002551 ORTHO05D002832 1.2e-30 137.1 143 54.5
Ca_10865_v3 Cicer arietinum L. HOM05D002551 ORTHO05D002832 1.6e-30 136.7 122 58.2
Medtr7g079730 Medicago truncatula HOM05D002551 ORTHO05D002832 3.6e-30 135.6 142 53.5
Ca_10867_v3 Cicer arietinum L. HOM05D002551 ORTHO05D002832 6.1e-30 134.8 143 52.4
Psat6g206160 Pisum sativum HOM05D002551 ORTHO05D002832 4.0e-29 132.1 146 52.1
Psat6g206200 Pisum sativum HOM05D002551 ORTHO05D002832 6.8e-29 131.3 144 51.4
Medtr7g079780 Medicago truncatula HOM05D002551 ORTHO05D002832 9.8e-28 127.5 143 52.4
TPR.G18515 Trifolium pratense HOM05D002551 ORTHO05D002832 1.7e-27 126.7 149 49.7
VMungo0331G0684 Vigna mungo HOM05D002551 ORTHO05D002832 1.1e-26 124.0 143 46.2
VMungo0720G0948 Vigna mungo HOM05D002551 ORTHO05D002832 4.1e-26 122.1 153 45.1
Lj5g0023246 Lotus japonicus HOM05D002551 ORTHO05D002832 7.0e-26 121.3 143 47.6
Glyma.10G246300 Glycine max HOM05D002551 ORTHO05D002832 2.7e-25 119.4 143 44.8
Glyma.20G148300 Glycine max HOM05D002551 ORTHO05D002832 1.0e-24 117.5 143 45.5
Glyma.20G148400 Glycine max HOM05D002551 ORTHO05D002832 1.0e-24 117.5 143 45.5
Phvul.007G059800 Phaseolus vulgaris HOM05D002551 ORTHO05D002832 2.3e-24 116.3 143 44.8
Lalb_Chr22g0356821 Lupinus albus HOM05D002551 ORTHO05D002832 3.0e-24 115.9 142 44.4
VMungo0720G2384 Vigna mungo HOM05D002551 ORTHO05D002832 5.0e-24 115.2 143 46.2
Lalb_Chr06g0170411 Lupinus albus HOM05D002551 ORTHO05D002832 6.6e-24 114.8 143 44.1
Lalb_Chr06g0170421 Lupinus albus HOM05D002551 ORTHO05D002832 6.6e-24 114.8 143 44.1
Glyma.20G146200 Glycine max HOM05D002551 ORTHO05D002832 1.1e-23 114.0 143 45.5
Glyma.20G148200 Glycine max HOM05D002551 ORTHO05D002832 1.1e-23 114.0 143 45.5
Lalb_Chr06g0170401 Lupinus albus HOM05D002551 ORTHO05D002832 1.1e-23 114.0 143 42.7
Lalb_Chr06g0170451 Lupinus albus HOM05D002551 ORTHO05D002832 1.5e-23 113.6 143 43.4
Lalb_Chr06g0170441 Lupinus albus HOM05D002551 ORTHO05D002832 2.5e-23 112.8 143 44.1
Haze_11204 Corylus avellana HOM05D002551 ORTHO05D002832 4.3e-23 112.1 144 42.4
Cfa008469 Carpinus fangiana HOM05D002551 ORTHO05D002832 2.8e-22 109.4 148 40.5
Lj5g0023538 Lotus japonicus HOM05D002551 ORTHO05D002832 5.2e-21 105.1 146 43.8
Glyma.10G246500 Glycine max HOM05D002551 ORTHO05D002832 8.9e-21 104.4 143 46.2
QL06p001653 Quercus lobata HOM05D002551 ORTHO05D002832 4.4e-20 102.1 144 38.9
CiPaw.01G198100 Carya illinoinensis HOM05D002551 ORTHO05D002832 5.8e-20 101.7 144 38.9
TPR.G28217 Trifolium pratense HOM05D002551 ORTHO05D002832 7.5e-20 101.3 106 54.7
SHI00485 Sapria himalayana HOM05D002551 ORTHO05D002832 9.8e-20 100.9 122 43.4
arahy.Tifrunner.gnm1.ann1.6TFR0H Arachis hypogaea HOM05D002551 ORTHO05D002832 1.3e-19 100.5 149 42.3
arahy.Tifrunner.gnm1.ann1.E5WGR0 Arachis hypogaea HOM05D002551 ORTHO05D002832 6.4e-19 98.2 151 41.1
RcHm_v2.0_Chr4g0415511 Rosa chinensis HOM05D002551 ORTHO05D002832 6.4e-19 98.2 144 38.9
FAN17G0400 Fragaria x ananassa HOM05D002551 ORTHO05D002832 9.2e-18 94.4 151 36.4
CANSAT78G1619 Cannabis sativa HOM05D002551 ORTHO05D002832 1.2e-17 94.0 145 35.2
CANSAT78G2456 Cannabis sativa HOM05D002551 ORTHO05D002832 1.2e-17 94.0 145 35.2
FAN22G0282 Fragaria x ananassa HOM05D002551 ORTHO05D002832 1.2e-17 94.0 151 35.8
Ah.07g204210 Amaranthus hybridus HOM05D002551 ORTHO05D002832 1.0e-16 90.9 138 34.1
EL10Ac3g06479 Beta vulgaris HOM05D002551 ORTHO05D002832 1.0e-16 90.9 149 35.6
AUR62034727 Chenopodium quinoa HOM05D002551 ORTHO05D002832 1.0e-16 90.9 145 35.2
PSO210G4289 Papaver somniferum HOM05D002551 ORTHO05D002832 1.7e-16 90.1 148 39.2
Aqoxy5G03501 Aquilegia oxysepala HOM05D002551 ORTHO05D002832 3.0e-16 89.4 149 37.6
ClCG05G005030 Citrullus lanatus HOM05D002551 ORTHO05D002832 3.0e-16 89.4 157 34.4
Aqoxy5G03465 Aquilegia oxysepala HOM05D002551 ORTHO05D002832 3.9e-16 89.0 149 36.9
TPR.G13825 Trifolium pratense HOM05D002551 ORTHO05D002832 6.6e-16 88.2 108 48.1
MELO3C006516.2 Cucumis melo HOM05D002551 ORTHO05D002832 8.6e-16 87.8 158 34.2
TWI73G1150 Tripterygium wilfordii HOM05D002551 ORTHO05D002832 1.1e-15 87.4 147 35.4
CAN.G1699.1 Capsicum annuum HOM05D002551 ORTHO05D002832 1.5e-15 87.0 158 31.0
MBI01_g44542_MAGBIO Magnolia biondii HOM05D002551 ORTHO05D002832 1.9e-15 86.7 150 34.7
PSO761G0488 Papaver somniferum HOM05D002551 ORTHO05D002832 2.5e-15 86.3 148 37.2
Prupe.1G018000 Prunus persica HOM05D002551 ORTHO05D002832 4.3e-15 85.5 150 32.7
Hund12100 Selenicereus undatus HOM05D002551 ORTHO05D002832 4.3e-15 85.5 143 37.8
AUR62033661 Chenopodium quinoa HOM05D002551 ORTHO05D002832 5.6e-15 85.1 145 33.8
ClCG09G007260 Citrullus lanatus HOM05D002551 ORTHO05D002832 7.3e-15 84.7 147 33.3
Aa31LG8G9150 Aethionema arabicum HOM05D002551 ORTHO05D002832 3.6e-14 82.4 147 34.0
Cpa.g.sc54.82 Carica papaya HOM05D002551 ORTHO05D002832 3.6e-14 82.4 142 31.7
PSO832G2004 Papaver somniferum HOM05D002551 ORTHO05D002832 4.7e-14 82.0 145 33.8
TAR362G0951 Trochodendron aralioides HOM05D002551 ORTHO05D002832 6.2e-14 81.6 150 34.0
CsaV3_7G027740 Cucumis sativus L. HOM05D002551 ORTHO05D002832 8.1e-14 81.3 147 34.0
Thhalv10021982m.g Eutrema salsugineum HOM05D002551 ORTHO05D002832 8.1e-14 81.3 130 36.2
PSO210G2787 Papaver somniferum HOM05D002551 ORTHO05D002832 8.1e-14 81.3 145 33.8
A01p32510 Brassica napus HOM05D002551 ORTHO05D002832 1.1e-13 80.9 128 36.7
BraA01t03381Z Brassica rapa HOM05D002551 ORTHO05D002832 1.1e-13 80.9 128 36.7
CsaV3_3G013090 Cucumis sativus L. HOM05D002551 ORTHO05D002832 1.4e-13 80.5 159 31.4
MELO3C015789.2 Cucumis melo HOM05D002551 ORTHO05D002832 1.8e-13 80.1 146 31.5
BcaC09g49187 Brassica carinata HOM05D002551 ORTHO05D002832 2.3e-13 79.7 128 36.7
C01p41670 Brassica napus HOM05D002551 ORTHO05D002832 2.3e-13 79.7 128 36.7
PSO761G0632 Papaver somniferum HOM05D002551 ORTHO05D002832 2.3e-13 79.7 148 34.5
Migut.G00363 Erythranthe guttata HOM05D002551 ORTHO05D002832 4.0e-13 79.0 146 35.6
MD16G1197200 Malus domestica HOM05D002551 ORTHO05D002832 4.0e-13 79.0 132 32.6
CARHR098520 Cardamine hirsuta HOM05D002551 ORTHO05D002832 5.2e-13 78.6 121 35.5
MD13G1196800 Malus domestica HOM05D002551 ORTHO05D002832 5.2e-13 78.6 156 32.1
Nitab4.5_0004062g0010 Nicotiana tabacum HOM05D002551 ORTHO05D002832 5.2e-13 78.6 149 32.9
Carub.0003s2279 Capsella rubella HOM05D002551 ORTHO05D002832 6.8e-13 78.2 140 35.7
Phvul.007G059700 Phaseolus vulgaris HOM05D002551 ORTHO05D002832 8.9e-13 77.8 142 35.2
Phvul.007G059725 Phaseolus vulgaris HOM05D002551 ORTHO05D002832 8.9e-13 77.8 142 35.2
Phvul.007G060000 Phaseolus vulgaris HOM05D002551 ORTHO05D002832 8.9e-13 77.8 142 35.2
Sed0010447 Sechium edule HOM05D002551 ORTHO05D002832 8.9e-13 77.8 142 29.6
BcaB04g20507 Brassica carinata HOM05D002551 ORTHO05D002832 1.2e-12 77.4 148 33.8
PSO832G4341 Papaver somniferum HOM05D002551 ORTHO05D002832 1.2e-12 77.4 174 30.5
Aqoxy5G00432 Aquilegia oxysepala HOM05D002551 ORTHO05D002832 1.5e-12 77.0 145 34.5
CAN.G1476.2 Capsicum annuum HOM05D002551 ORTHO05D002832 1.5e-12 77.0 149 30.9
Cpa.g.sc58.77 Carica papaya HOM05D002551 ORTHO05D002832 1.5e-12 77.0 143 31.5
Nitab4.5_0002307g0030 Nicotiana tabacum HOM05D002551 ORTHO05D002832 1.5e-12 77.0 149 30.9
SGA_v2.0_scaffold191G40490 Striga asiatica HOM05D002551 ORTHO05D002832 1.5e-12 77.0 122 33.6
Gohir.A09G217700 Gossypium hirsutum HOM05D002551 ORTHO05D002832 2.0e-12 76.6 151 31.1
Sed0017724 Sechium edule HOM05D002551 ORTHO05D002832 2.0e-12 76.6 146 34.2
Aqoxy2G03428 Aquilegia oxysepala HOM05D002551 ORTHO05D002832 2.6e-12 76.3 137 34.3
AL3G36950 Arabidopsis lyrata HOM05D002551 ORTHO05D002832 2.6e-12 76.3 123 35.0
Gorai.006G241100 Gossypium raimondii HOM05D002551 ORTHO05D002832 3.4e-12 75.9 153 30.1
Thhalv10022050m.g Eutrema salsugineum HOM05D002551 ORTHO05D002832 4.4e-12 75.5 129 35.7
Phvul.007G059750 Phaseolus vulgaris HOM05D002551 ORTHO05D002832 4.4e-12 75.5 115 38.3
Phvul.007G059775 Phaseolus vulgaris HOM05D002551 ORTHO05D002832 4.4e-12 75.5 115 38.3
Eucgr.D01140 Eucalyptus grandis HOM05D002551 ORTHO05D002832 5.8e-12 75.1 151 31.8
Gohir.D09G220000 Gossypium hirsutum HOM05D002551 ORTHO05D002832 5.8e-12 75.1 131 35.9
Gohir.D09G220100 Gossypium hirsutum HOM05D002551 ORTHO05D002832 5.8e-12 75.1 153 30.1
Lj9C529T11 Lonicera japonica HOM05D002551 ORTHO05D002832 5.8e-12 75.1 145 31.0
GSVIVG01001185001 Vitis vinifera HOM05D002551 ORTHO05D002832 5.8e-12 75.1 146 32.2
Thecc.04G235500 Theobroma cacao HOM05D002551 ORTHO05D002832 7.5e-12 74.7 148 31.8
Prupe.1G017700 Prunus persica HOM05D002551 ORTHO05D002832 9.9e-12 74.3 123 34.1
Sp3g20400 Schrenkiella parvula HOM05D002551 ORTHO05D002832 9.9e-12 74.3 151 33.8
Dinv32904 Davidia involucrata HOM05D002551 ORTHO05D002832 2.2e-11 73.2 148 34.5
Gohir.A09G217600 Gossypium hirsutum HOM05D002551 ORTHO05D002832 2.2e-11 73.2 126 34.9
Gohir.A12G003800 Gossypium hirsutum HOM05D002551 ORTHO05D002832 2.2e-11 73.2 156 31.4
GSVIVG01001186001 Vitis vinifera HOM05D003028 ORTHO05D003465 2.9e-11 72.8 148 33.1
AT3G22640 Arabidopsis thaliana HOM05D002551 ORTHO05D002832 3.7e-11 72.4 120 33.3
MD16G1197100 Malus domestica HOM05D002551 ORTHO05D002832 3.7e-11 72.4 121 35.5
TWI75G1269 Tripterygium wilfordii HOM05D002551 ORTHO05D002832 3.7e-11 72.4 149 30.9
Actinidia21130 Actinidia chinensis HOM05D002551 ORTHO05D002832 4.9e-11 72.0 144 32.6
CAN.G1699.2 Capsicum annuum HOM05D002551 ORTHO05D002832 4.9e-11 72.0 151 29.8
Manes.05G079100 Manihot esculenta HOM05D002551 ORTHO05D002832 4.9e-11 72.0 147 34.0
Rhsim01G0273000 Rhododendron simsii HOM05D002551 ORTHO05D002832 4.9e-11 72.0 147 32.7
COL.COLO4_21520 Corchorus olitorius HOM05D002551 ORTHO05D002832 6.4e-11 71.6 129 34.1
Manes.05G078900 Manihot esculenta HOM05D002551 ORTHO05D002832 6.4e-11 71.6 147 33.3
Solyc09g082340.2 Solanum lycopersicum HOM05D002551 ORTHO05D002832 6.4e-11 71.6 153 30.1
THA.LOC104822265 Tarenaya hassleriana HOM05D002551 ORTHO05D002832 6.4e-11 71.6 151 29.8
Gorai.006G241000 Gossypium raimondii HOM05D002551 ORTHO05D002832 8.3e-11 71.2 131 34.4
Medtr1g071710 Medicago truncatula HOM05D002551 ORTHO05D002832 8.3e-11 71.2 166 30.1
Sopen09g031220 Solanum pennellii HOM05D002551 ORTHO05D002832 8.3e-11 71.2 153 30.1
PGR004G1796 Punica granatum HOM05D002551 ORTHO05D002832 1.1e-10 70.9 143 32.9
CARHR098510 Cardamine hirsuta HOM05D002551 ORTHO05D002832 1.4e-10 70.5 133 33.1
Dinv34780 Davidia involucrata HOM05D002551 ORTHO05D002832 1.4e-10 70.5 145 35.2
MD11G1281600 Malus domestica HOM05D002551 ORTHO05D002832 1.4e-10 70.5 147 29.9
RcHm_v2.0_Chr6g0290441 Rosa chinensis HOM05D002551 ORTHO05D002832 1.4e-10 70.5 143 30.1
TAR633G2055 Trochodendron aralioides HOM05D002551 ORTHO05D002832 1.4e-10 70.5 145 34.5
Sed0020861 Sechium edule HOM05D002551 ORTHO05D002832 1.9e-10 70.1 143 28.0
Actinidia24912 Actinidia chinensis HOM05D002551 ORTHO05D002832 3.2e-10 69.3 147 32.7
FAN15G1237 Fragaria x ananassa HOM05D002551 ORTHO05D002832 3.2e-10 69.3 145 29.7
Nitab4.5_0000252g0060 Nicotiana tabacum HOM05D002551 ORTHO05D002832 3.2e-10 69.3 143 34.3
Haze_04679 Corylus avellana HOM05D002551 ORTHO05D002832 4.1e-10 68.9 144 33.3
FvH4_2g23190 Fragaria vesca HOM05D002551 ORTHO05D002832 4.1e-10 68.9 143 29.4
Lj5g0011762 Lotus japonicus HOM05D002551 ORTHO05D002832 4.1e-10 68.9 168 31.0
MD03G1261200 Malus domestica HOM05D002551 ORTHO05D002832 4.1e-10 68.9 147 29.3
Sopen09g027240 Solanum pennellii HOM05D002551 ORTHO05D002832 4.1e-10 68.9 143 34.3
FAN20G1127 Fragaria x ananassa HOM05D002551 ORTHO05D002832 5.4e-10 68.6 143 30.1
Nitab4.5_0001729g0060 Nicotiana tabacum HOM05D002551 ORTHO05D002832 5.4e-10 68.6 143 34.3
Cfa006172 Carpinus fangiana HOM05D002551 ORTHO05D002832 7.1e-10 68.2 144 33.3
Solyc09g065470.3 Solanum lycopersicum HOM05D002551 ORTHO05D002832 7.1e-10 68.2 143 31.5
MBI01_g44541_MAGBIO Magnolia biondii HOM05D002551 ORTHO05D002832 9.2e-10 67.8 157 31.8
PGSC0003DMG400032247 Solanum tuberosum HOM05D002551 ORTHO05D002832 9.2e-10 67.8 128 30.5
CDE04G2296 Ceratophyllum demersum HOM05D002551 ORTHO05D002832 1.2e-09 67.4 145 31.0
Manes.05G079000 Manihot esculenta HOM05D002551 ORTHO05D002832 1.2e-09 67.4 139 34.5
Peaxi162Scf00092g00216 Petunia axillaris HOM05D002551 ORTHO05D002832 1.2e-09 67.4 125 31.2
Prupe.8G237500 Prunus persica HOM05D002551 ORTHO05D002832 1.2e-09 67.4 143 32.2
Solyc09g082330.2 Solanum lycopersicum HOM05D002551 ORTHO05D002832 1.2e-09 67.4 121 31.4
Sopen09g031210 Solanum pennellii HOM05D000002 ORTHO05D000001 1.2e-09 67.4 121 28.1
EL10Ac5g10531 Beta vulgaris HOM05D002551 ORTHO05D002832 1.6e-09 67.0 148 33.1
CANSAT25G1299 Cannabis sativa HOM05D002551 ORTHO05D002832 1.6e-09 67.0 143 30.1
CiPaw.08G107900 Carya illinoinensis HOM05D002551 ORTHO05D002832 1.6e-09 67.0 122 35.2
Peaxi162Scf00230g00126 Petunia axillaris HOM05D002551 ORTHO05D002832 1.6e-09 67.0 144 34.0
Aqoxy2G03431 Aquilegia oxysepala HOM05D002551 ORTHO05D002832 4.6e-09 65.5 136 32.4
Sopen09g031230 Solanum pennellii HOM05D002551 ORTHO05D002832 6.0e-09 65.1 155 31.0
Ah.02g111200 Amaranthus hybridus HOM05D002551 ORTHO05D002832 1.0e-08 64.3 160 33.8
CAN.G1699.3 Capsicum annuum HOM05D002551 ORTHO05D002832 1.0e-08 64.3 81 37.0
TPR.G5454 Trifolium pratense HOM05D002551 ORTHO05D002832 1.0e-08 64.3 101 39.6
HPP92_018618 Vanilla planifolia HOM05D002551 ORTHO05D002832 1.3e-08 63.9 122 29.5
Psat6g059720 Pisum sativum HOM05D002551 ORTHO05D002832 1.7e-08 63.5 166 27.1
vmacro14908 Vaccinium macrocarpon HOM05D002551 ORTHO05D002832 1.7e-08 63.5 152 30.9
Cpa.g.sc52.61 Carica papaya HOM05D002551 ORTHO05D002832 2.3e-08 63.2 136 30.1
Zm00001eb052450 Zea mays HOM05D002551 ORTHO05D002832 2.3e-08 63.2 154 27.9
arahy.Tifrunner.gnm1.ann1.WD5WT3 Arachis hypogaea HOM05D002551 ORTHO05D002832 5.1e-08 62.0 150 31.3
CAN.G1094.27 Capsicum annuum HOM05D002551 ORTHO05D002832 5.1e-08 62.0 121 30.6
VMungo0720G0119 Vigna mungo HOM05D002551 ORTHO05D002832 6.6e-08 61.6 101 39.6
AUR62028591 Chenopodium quinoa HOM05D002551 ORTHO05D002832 8.6e-08 61.2 145 29.7
AUR62032318 Chenopodium quinoa HOM05D002551 ORTHO05D002832 1.5e-07 60.5 145 29.7
TPR.G27145 Trifolium pratense HOM05D002551 ORTHO05D002832 2.5e-07 59.7 166 27.1
Atru.chr5.1483 Acer truncatum HOM05D002551 ORTHO05D002832 5.6e-07 58.5 150 26.7
Nn1g02381 Nelumbo nucifera HOM05D002551 ORTHO05D002832 5.6e-07 58.5 149 28.9
Peaxi162Scf00230g00127 Petunia axillaris HOM05D002551 ORTHO05D002832 5.6e-07 58.5 148 27.7
Phvul.007G173600 Phaseolus vulgaris HOM05D002551 ORTHO05D002832 1.6e-06 57.0 173 27.2
Lalb_Chr09g0322571 Lupinus albus HOM05D001788 ORTHO05D006995 2.1e-06 56.6 122 32.0
SEGI_34479 Sequoiadendron giganteum HOM05D002551 ORTHO05D002832 3.6e-06 55.8 123 30.1
DCAR_005862 Daucus carota HOM05D002551 ORTHO05D002832 4.7e-06 55.5 144 26.4


User provided reference genes

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