Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s3911g0040 Pisum sativum HOM05D020396 ORTHO05D004918 1.0e-67 260.0 133 100.0
Psat0s3911g0080 Pisum sativum HOM05D000288 ORTHO05D000173 4.2e-50 201.4 108 96.3
Psat0s2686g0120 Pisum sativum HOM05D000288 ORTHO05D000173 1.1e-34 150.2 77 97.4
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 1.1e-21 107.1 59 93.2
Psat1g045360 Pisum sativum HOM05D004467 ORTHO05D004918 2.0e-20 102.8 49 98.0
Psat4g067680 Pisum sativum HOM05D020396 ORTHO05D004918 5.0e-19 98.2 69 76.8
Psat7g176760 Pisum sativum HOM05D020396 ORTHO05D004918 5.0e-19 98.2 69 76.8
Psat7g176840 Pisum sativum HOM05D020396 ORTHO05D004918 5.0e-19 98.2 69 76.8
Psat4g066920 Pisum sativum HOM05D020396 ORTHO05D004918 1.5e-18 96.7 69 75.4
Psat6g227400 Pisum sativum HOM05D020396 ORTHO05D004918 1.5e-18 96.7 63 84.1
TPR.G28824 Trifolium pratense HOM05D004467 ORTHO05D004918 1.5e-18 96.7 48 91.7
Ca_25554_v3 Cicer arietinum L. HOM05D004467 ORTHO05D004918 1.9e-18 96.3 48 91.7
Medtr6g087140 Medicago truncatula HOM05D004467 ORTHO05D004918 6.1e-17 91.3 48 87.5
arahy.Tifrunner.gnm1.ann1.4I8WV5 Arachis hypogaea HOM05D004467 ORTHO05D004918 3.0e-16 89.0 50 86.0
Phvul.004G169100 Phaseolus vulgaris HOM05D004467 ORTHO05D004918 8.9e-16 87.4 50 84.0
VMungo0464G1817 Vigna mungo HOM05D004467 ORTHO05D004918 8.9e-16 87.4 50 84.0
PGR102G2224 Punica granatum HOM05D004467 ORTHO05D004918 2.6e-15 85.9 48 79.2
Glyma.01G146400 Glycine max HOM05D004467 ORTHO05D004918 4.4e-15 85.1 50 80.0
Glyma.09G193900 Glycine max HOM05D004467 ORTHO05D004918 4.4e-15 85.1 50 80.0
Lalb_Chr05g0223111 Lupinus albus HOM05D004467 ORTHO05D004918 1.3e-14 83.6 48 83.3
Lalb_Chr16g0388041 Lupinus albus HOM05D004467 ORTHO05D004918 1.3e-14 83.6 48 83.3
Lj2g0027738 Lotus japonicus HOM05D004467 ORTHO05D004918 2.2e-14 82.8 50 80.0
Haze_25793 Corylus avellana HOM05D004467 ORTHO05D004918 2.8e-14 82.4 54 68.5
Manes.16G111600 Manihot esculenta HOM05D004467 ORTHO05D004918 1.1e-13 80.5 64 64.1
Cfa003215 Carpinus fangiana HOM05D004467 ORTHO05D004918 1.8e-13 79.7 101 45.5
CiPaw.03G227200 Carya illinoinensis HOM05D004467 ORTHO05D004918 1.8e-13 79.7 56 67.9
QL02p042682 Quercus lobata HOM05D004467 ORTHO05D004918 1.8e-13 79.7 55 67.3
QL02p042959 Quercus lobata HOM05D004467 ORTHO05D004918 1.8e-13 79.7 55 67.3
Cpa.g.sc40.31 Carica papaya HOM05D004467 ORTHO05D004918 2.4e-13 79.3 50 74.0
Gohir.D05G026900 Gossypium hirsutum HOM05D004467 ORTHO05D004918 5.4e-13 78.2 56 67.9
Hma1.2p1_0945F.1_g240200 Hydrangea macrophylla HOM05D004467 ORTHO05D004918 7.0e-13 77.8 56 60.7
Manes.03G024900 Manihot esculenta HOM05D004467 ORTHO05D004918 1.2e-12 77.0 50 72.0
TWI63G0792 Tripterygium wilfordii HOM05D004467 ORTHO05D004918 1.2e-12 77.0 58 65.5
TWI32G0931 Tripterygium wilfordii HOM05D004467 ORTHO05D004918 1.6e-12 76.6 56 67.9
Atru.chr7.1422 Acer truncatum HOM05D004467 ORTHO05D004918 2.0e-12 76.3 56 66.1
Gorai.009G027000 Gossypium raimondii HOM05D004467 ORTHO05D004918 2.0e-12 76.3 56 66.1
Eucgr.C03788 Eucalyptus grandis HOM05D004467 ORTHO05D004918 3.5e-12 75.5 50 70.0
Ciclev10008049m.g Citrus clementina HOM05D004467 ORTHO05D004918 4.5e-12 75.1 50 70.0
Gohir.A05G025400 Gossypium hirsutum HOM05D004467 ORTHO05D004918 5.9e-12 74.7 56 64.3
TAR383G0828 Trochodendron aralioides HOM05D004467 ORTHO05D004918 5.9e-12 74.7 56 64.3
Psat6g030640 Pisum sativum HOM05D000552 ORTHO05D000469 7.8e-12 74.3 60 70.0
COL.COLO4_34790 Corchorus olitorius HOM05D004467 ORTHO05D004918 1.0e-11 73.9 47 72.3
Nitab4.5_0000012g0160 Nicotiana tabacum HOM05D004467 ORTHO05D004918 1.0e-11 73.9 50 72.0
Nitab4.5_0004727g0020 Nicotiana tabacum HOM05D004467 ORTHO05D004918 1.0e-11 73.9 50 72.0
Aa31LG2G21270 Aethionema arabicum HOM05D004467 ORTHO05D004918 1.3e-11 73.6 49 75.5
AL7G23580 Arabidopsis lyrata HOM05D004467 ORTHO05D004918 1.3e-11 73.6 49 75.5
AT4G28910 Arabidopsis thaliana HOM05D004467 ORTHO05D004918 1.3e-11 73.6 49 75.5
BcaC09g51670 Brassica carinata HOM05D004467 ORTHO05D004918 1.3e-11 73.6 49 75.5
BcaNung01350 Brassica carinata HOM05D004467 ORTHO05D004918 1.3e-11 73.6 49 75.5
BcaNung02901 Brassica carinata HOM05D004467 ORTHO05D004918 1.3e-11 73.6 49 75.5
BcaNung06399 Brassica carinata HOM05D004467 ORTHO05D004918 1.3e-11 73.6 49 75.5
A01p09030 Brassica napus HOM05D004467 ORTHO05D004918 1.3e-11 73.6 49 75.5
A03p58480 Brassica napus HOM05D004467 ORTHO05D004918 1.3e-11 73.6 49 75.5
C07p56500 Brassica napus HOM05D004467 ORTHO05D004918 1.3e-11 73.6 49 75.5
BolC1t01020H Brassica oleracea HOM05D004467 ORTHO05D004918 1.3e-11 73.6 49 75.5
BolC7t46129H Brassica oleracea HOM05D004467 ORTHO05D004918 1.3e-11 73.6 49 75.5
BraA01t00851Z Brassica rapa HOM05D004467 ORTHO05D004918 1.3e-11 73.6 49 75.5
BraA03t14909Z Brassica rapa HOM05D004467 ORTHO05D004918 1.3e-11 73.6 49 75.5
CSS0015707 Camellia sinensis var. sinensis HOM05D000047 ORTHO05D000044 1.3e-11 73.6 57 61.4
CSS0045473 Camellia sinensis var. sinensis HOM05D000047 ORTHO05D000044 1.3e-11 73.6 57 61.4
Carub.0007s1175 Capsella rubella HOM05D004467 ORTHO05D004918 1.3e-11 73.6 49 75.5
CARHR236680 Cardamine hirsuta HOM05D004467 ORTHO05D004918 1.3e-11 73.6 49 75.5
Cc06_g10170 Coffea canephora HOM05D004467 ORTHO05D004918 1.3e-11 73.6 50 68.0
Thhalv10025262m.g Eutrema salsugineum HOM05D004467 ORTHO05D004918 1.3e-11 73.6 49 75.5
Sp7g26880 Schrenkiella parvula HOM05D004467 ORTHO05D004918 1.3e-11 73.6 49 75.5
GSVIVG01015335001 Vitis vinifera HOM05D004467 ORTHO05D004918 1.3e-11 73.6 53 62.3
Gohir.D06G064200 Gossypium hirsutum HOM05D004467 ORTHO05D004918 1.7e-11 73.2 47 72.3
Gorai.010G074900 Gossypium raimondii HOM05D004467 ORTHO05D004918 1.7e-11 73.2 47 72.3
Duzib187G1021 Durio zibethinus HOM05D004467 ORTHO05D004918 2.3e-11 72.8 63 58.7
Solyc05g018320.3 Solanum lycopersicum HOM05D004467 ORTHO05D004918 2.3e-11 72.8 50 70.0
Sopen05g015080 Solanum pennellii HOM05D004467 ORTHO05D004918 2.3e-11 72.8 50 70.0
PGSC0003DMG402027437 Solanum tuberosum HOM05D004467 ORTHO05D004918 2.3e-11 72.8 50 70.0
CANSAT56G0937 Cannabis sativa HOM05D004467 ORTHO05D004918 2.9e-11 72.4 50 68.0
CsaV3_2G002070 Cucumis sativus L. HOM05D004467 ORTHO05D004918 2.9e-11 72.4 47 68.1
unitig_22.g6724 Utricularia gibba HOM05D004467 ORTHO05D004918 2.9e-11 72.4 50 68.0
C01p10580 Brassica napus HOM05D004467 ORTHO05D004918 3.9e-11 72.0 49 73.5
CAN.G587.15 Capsicum annuum HOM05D004467 ORTHO05D004918 3.9e-11 72.0 50 70.0
Duzib168G1064 Durio zibethinus HOM05D004467 ORTHO05D004918 3.9e-11 72.0 45 75.6
Actinidia20407 Actinidia chinensis HOM05D004467 ORTHO05D004918 5.0e-11 71.6 46 69.6
MSTRG.10616 Avicennia marina HOM05D004467 ORTHO05D004918 5.0e-11 71.6 56 60.7
ClCG11G002290 Citrullus lanatus HOM05D004467 ORTHO05D004918 5.0e-11 71.6 47 68.1
Potri.018G085100 Populus trichocarpa HOM05D004467 ORTHO05D004918 5.0e-11 71.6 50 68.0
THA.LOC104820046 Tarenaya hassleriana HOM05D004467 ORTHO05D004918 5.0e-11 71.6 47 74.5
MELO3C004575.2 Cucumis melo HOM05D004467 ORTHO05D004918 6.6e-11 71.2 47 66.0
Oeu053753.2 Olea europaea HOM05D004467 ORTHO05D004918 6.6e-11 71.2 46 69.6
Peaxi162Scf00539g00210 Petunia axillaris HOM05D004467 ORTHO05D004918 8.6e-11 70.9 50 68.0
Prupe.7G224200 Prunus persica HOM05D004467 ORTHO05D004918 8.6e-11 70.9 62 61.3
SGA_v2.0_scaffold5G02535 Striga asiatica HOM05D004467 ORTHO05D004918 8.6e-11 70.9 45 71.1
Thecc.09G104300 Theobroma cacao HOM05D004467 ORTHO05D004918 8.6e-11 70.9 56 60.7
Actinidia09440 Actinidia chinensis HOM05D004467 ORTHO05D004918 1.1e-10 70.5 45 71.1
SalBow5G0997 Salvia bowleyana HOM05D004467 ORTHO05D004918 1.1e-10 70.5 50 64.0
Sed0017359 Sechium edule HOM05D004467 ORTHO05D004918 1.1e-10 70.5 128 39.1
Lj8C70G12 Lonicera japonica HOM05D004467 ORTHO05D004918 1.5e-10 70.1 41 78.0
RcHm_v2.0_Chr2g0091401 Rosa chinensis HOM05D004467 ORTHO05D004918 1.5e-10 70.1 50 68.0
Migut.K00515 Erythranthe guttata HOM05D004467 ORTHO05D004918 2.5e-10 69.3 49 67.3
MD15G1193100 Malus domestica HOM05D004467 ORTHO05D004918 2.5e-10 69.3 50 66.0
FvH4_1g05760 Fragaria vesca HOM05D004467 ORTHO05D004918 3.3e-10 68.9 55 61.8
FAN19G0416 Fragaria x ananassa HOM05D004467 ORTHO05D004918 3.3e-10 68.9 55 61.8
Sed0000460 Sechium edule HOM05D004467 ORTHO05D004918 3.3e-10 68.9 45 68.9
CsaV3_1G019490 Cucumis sativus L. HOM05D004467 ORTHO05D004918 4.3e-10 68.6 111 40.5
FAN23G1822 Fragaria x ananassa HOM05D004467 ORTHO05D004918 4.3e-10 68.6 50 66.0
Dinv36673 Davidia involucrata HOM05D004467 ORTHO05D004918 5.6e-10 68.2 45 68.9
FAN26G1468 Fragaria x ananassa HOM05D004467 ORTHO05D004918 5.6e-10 68.2 47 68.1
FAN26G2528 Fragaria x ananassa HOM05D004467 ORTHO05D004918 5.6e-10 68.2 47 68.1
FAN28G1510 Fragaria x ananassa HOM05D004467 ORTHO05D004918 5.6e-10 68.2 47 68.1
Nn3g18160 Nelumbo nucifera HOM05D004467 ORTHO05D004918 5.6e-10 68.2 43 74.4
Potri.006G162900 Populus trichocarpa HOM05D004467 ORTHO05D004918 5.6e-10 68.2 50 64.0
Sabra18G0073600 Salix brachista HOM05D004467 ORTHO05D004918 5.6e-10 68.2 45 71.1
MBI01_g24452_MAGBIO Magnolia biondii HOM05D004467 ORTHO05D004918 7.3e-10 67.8 51 64.7
MBI01_g39827_MAGBIO Magnolia biondii HOM05D004467 ORTHO05D004918 7.3e-10 67.8 51 64.7
MD02G1058800 Malus domestica HOM05D004467 ORTHO05D004918 9.5e-10 67.4 50 64.0
Rhsim05G0042300 Rhododendron simsii HOM05D004467 ORTHO05D004918 1.2e-09 67.0 57 54.4
CsaV3_6G021320 Cucumis sativus L. HOM05D004467 ORTHO05D004918 2.8e-09 65.9 111 39.6
vmacro10868 Vaccinium macrocarpon HOM05D004467 ORTHO05D004918 2.8e-09 65.9 57 54.4
ATR0705G047 Amborella trichopoda HOM05D004467 ORTHO05D004918 3.6e-09 65.5 45 60.0
CSS0030226 Camellia sinensis var. sinensis HOM05D004467 ORTHO05D004918 4.7e-09 65.1 58 51.7
TAR636G0062 Trochodendron aralioides HOM05D004467 ORTHO05D004918 4.7e-09 65.1 56 57.1
DCAR_024697 Daucus carota HOM05D004467 ORTHO05D004918 6.1e-09 64.7 59 52.5
Sc08g0007800 Simmondsia chinensis HOM05D004467 ORTHO05D004918 6.1e-09 64.7 46 63.0
Hund09233 Selenicereus undatus HOM05D004467 ORTHO05D004918 1.0e-08 63.9 45 62.2
Hund26245 Selenicereus undatus HOM05D004467 ORTHO05D004918 1.0e-08 63.9 45 66.7
HanXRQChr09g0239001 Helianthus annuus HOM05D004467 ORTHO05D004918 1.4e-08 63.5 59 54.2
TAR626G1578 Trochodendron aralioides HOM05D004467 ORTHO05D004918 1.8e-08 63.2 56 55.4
TAR636G0217 Trochodendron aralioides HOM05D004467 ORTHO05D004918 1.8e-08 63.2 56 55.4
MELO3C024641.2 Cucumis melo HOM05D004467 ORTHO05D004918 2.3e-08 62.8 113 40.7
ECA240G1275 Erigeron canadensis HOM05D004467 ORTHO05D004918 2.3e-08 62.8 45 64.4
Dinv41649 Davidia involucrata HOM05D004467 ORTHO05D004918 3.1e-08 62.4 41 70.7
Os05g0558800 Oryza sativa ssp. japonica HOM05D004467 ORTHO05D004918 3.1e-08 62.4 43 67.4
Lsat_1_v5_gn_7_41160 Lactuca sativa HOM05D004467 ORTHO05D004918 6.8e-08 61.2 45 62.2
THA.LOC104814564 Tarenaya hassleriana HOM05D004467 ORTHO05D004918 6.8e-08 61.2 45 68.9
Aa31LG8G16980 Aethionema arabicum HOM05D004467 ORTHO05D004918 8.9e-08 60.8 88 44.3
Lj7C659T11 Lonicera japonica HOM05D004467 ORTHO05D004918 8.9e-08 60.8 111 37.8
Aqoxy7G01500 Aquilegia oxysepala HOM05D004467 ORTHO05D004918 1.5e-07 60.1 45 62.2
EL10Ac8g18417 Beta vulgaris HOM05D004467 ORTHO05D004918 1.5e-07 60.1 45 57.8
HanXRQChr03g0061251 Helianthus annuus HOM05D004467 ORTHO05D004918 1.5e-07 60.1 45 60.0
Zm00001eb343360 Zea mays HOM05D004467 ORTHO05D004918 1.5e-07 60.1 43 65.1
PSO210G6045 Papaver somniferum HOM05D004467 ORTHO05D004918 2.6e-07 59.3 95 38.9
PSO210G7819 Papaver somniferum HOM05D004467 ORTHO05D004918 2.6e-07 59.3 95 38.9
HPP92_006324 Vanilla planifolia HOM05D004467 ORTHO05D004918 3.4e-07 58.9 109 33.0
HPP92_027881 Vanilla planifolia HOM05D004467 ORTHO05D004918 3.4e-07 58.9 109 33.0
PSO566G0239 Papaver somniferum HOM05D004467 ORTHO05D004918 4.4e-07 58.5 43 62.8
AUR62021444 Chenopodium quinoa HOM05D004467 ORTHO05D004918 7.5e-07 57.8 44 54.5
PSO782G2485 Papaver somniferum HOM05D004467 ORTHO05D004918 7.5e-07 57.8 51 54.9
AUR62010932 Chenopodium quinoa HOM05D004467 ORTHO05D004918 3.7e-06 55.5 103 36.9
SEGI_06055 Sequoiadendron giganteum HOM05D025566 ORTHO05D004918 3.7e-06 55.5 42 61.9
SEGI_26530 Sequoiadendron giganteum HOM05D004467 ORTHO05D004918 6.4e-06 54.7 42 59.5
BcaNung01354 Brassica carinata HOM05D004467 ORTHO05D004918 8.3e-06 54.3 35 77.1


User provided reference genes

Program Settings