Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 4.4e-72 274.6 148 100.0
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 4.1e-70 268.1 148 97.3
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 5.3e-70 267.7 148 97.3
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 3.9e-65 251.5 148 90.5
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 2.2e-63 245.7 146 89.0
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 1.4e-62 243.0 146 89.0
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 1.8e-62 242.7 146 88.4
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 7.0e-62 240.7 146 87.7
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 4.5e-61 238.0 143 86.7
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 7.7e-61 237.3 149 85.9
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 1.7e-60 236.1 140 89.3
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 5.0e-60 234.6 149 83.9
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 5.0e-60 234.6 149 83.9
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 1.9e-59 232.6 149 83.2
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 1.9e-59 232.6 149 83.2
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 1.9e-59 232.6 148 85.1
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 1.9e-59 232.6 148 85.1
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 1.9e-59 232.6 148 85.1
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 1.9e-59 232.6 143 86.7
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 9.4e-59 230.3 147 81.6
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 1.2e-58 229.9 145 84.1
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 1.2e-58 229.9 148 83.1
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 1.2e-58 229.9 143 85.3
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 2.1e-58 229.2 143 85.3
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 3.6e-58 228.4 149 81.9
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 3.6e-58 228.4 144 82.6
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 1.0e-57 226.9 148 80.4
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 1.8e-57 226.1 149 80.5
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 1.8e-57 226.1 150 82.0
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 2.3e-57 225.7 148 79.1
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 4.0e-57 224.9 148 79.7
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 4.0e-57 224.9 149 82.6
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 5.2e-57 224.6 145 80.7
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 6.7e-57 224.2 148 79.1
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 6.7e-57 224.2 148 79.1
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 6.7e-57 224.2 142 81.0
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 8.8e-57 223.8 148 79.7
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.2e-56 223.4 149 79.9
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.5e-56 223.0 149 79.9
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 1.5e-56 223.0 148 83.1
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 2.0e-56 222.6 149 79.2
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 2.6e-56 222.2 148 79.1
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 2.6e-56 222.2 150 82.0
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 3.3e-56 221.9 149 77.9
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 4.4e-56 221.5 148 78.4
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 5.7e-56 221.1 142 81.7
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 7.5e-56 220.7 148 81.1
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 7.5e-56 220.7 142 80.3
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 9.7e-56 220.3 148 79.7
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 1.3e-55 219.9 149 80.5
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 1.3e-55 219.9 144 79.9
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 1.3e-55 219.9 142 79.6
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 1.7e-55 219.5 149 79.9
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 2.8e-55 218.8 148 76.4
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 2.8e-55 218.8 144 79.2
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 2.8e-55 218.8 144 79.2
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 2.8e-55 218.8 145 77.9
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 3.7e-55 218.4 147 78.2
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 4.8e-55 218.0 149 79.2
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 4.8e-55 218.0 146 80.1
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 6.3e-55 217.6 146 80.1
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 6.3e-55 217.6 148 75.0
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 8.2e-55 217.2 145 77.9
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 1.1e-54 216.9 145 79.3
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 1.1e-54 216.9 146 80.1
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 1.1e-54 216.9 143 76.9
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 1.1e-54 216.9 148 76.4
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 1.1e-54 216.9 137 79.6
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.4e-54 216.5 144 79.2
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 2.4e-54 215.7 148 76.4
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 3.1e-54 215.3 141 79.4
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 4.1e-54 214.9 144 77.8
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 5.3e-54 214.5 139 80.6
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 5.3e-54 214.5 148 77.7
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 5.3e-54 214.5 141 78.7
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 7.0e-54 214.2 146 79.5
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 7.0e-54 214.2 148 76.4
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 9.1e-54 213.8 144 78.5
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 9.1e-54 213.8 144 78.5
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 9.1e-54 213.8 144 77.8
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 1.2e-53 213.4 148 77.0
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 1.2e-53 213.4 137 78.8
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 1.6e-53 213.0 148 77.0
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 2.0e-53 212.6 143 78.3
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 2.0e-53 212.6 137 78.8
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 2.7e-53 212.2 140 79.3
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 2.7e-53 212.2 140 79.3
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 2.7e-53 212.2 145 77.2
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 4.5e-53 211.5 147 77.6
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 4.5e-53 211.5 137 80.3
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 5.9e-53 211.1 149 74.5
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 7.7e-53 210.7 147 77.6
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 1.0e-52 210.3 148 74.3
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 1.3e-52 209.9 145 74.5
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 2.2e-52 209.1 145 76.6
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 5.0e-52 208.0 140 76.4
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 6.5e-52 207.6 149 75.2
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 1.1e-51 206.8 133 79.7
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 7.2e-51 204.1 137 75.2
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 7.2e-51 204.1 146 74.7
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 2.7e-50 202.2 137 74.5
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 3.6e-50 201.8 134 76.9
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 8.0e-50 200.7 143 73.4
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.0e-49 200.3 149 72.5
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 2.3e-49 199.1 149 73.2
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 1.7e-47 193.0 151 72.2
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 2.8e-47 192.2 140 72.1
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 3.7e-47 191.8 140 72.1
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 4.8e-47 191.4 140 72.9
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 8.3e-47 190.7 137 75.2
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 8.3e-47 190.7 137 75.2
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 8.3e-47 190.7 140 71.4
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 8.3e-47 190.7 137 75.2
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 1.1e-46 190.3 135 71.9
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 1.4e-46 189.9 148 66.2
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 1.4e-46 189.9 137 73.7
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 1.4e-46 189.9 125 80.8
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 1.8e-46 189.5 135 71.9
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 1.8e-46 189.5 133 73.7
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 3.1e-46 188.7 135 74.1
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 9.1e-46 187.2 142 72.5
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 1.2e-45 186.8 143 72.0
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 1.6e-45 186.4 151 71.5
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 6.5e-44 181.0 144 68.8
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 8.6e-44 180.6 145 71.0
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 1.1e-43 180.3 145 71.0
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 3.3e-43 178.7 150 68.7
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 4.2e-43 178.3 150 68.7
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 2.8e-42 175.6 116 76.7
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 1.8e-41 172.9 140 62.9
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 1.8e-41 172.9 120 76.7
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 6.8e-41 171.0 148 60.1
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 1.7e-39 166.4 150 64.7
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 2.0e-37 159.5 134 59.7
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 2.5e-35 152.5 139 56.8
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 1.0e-33 147.1 132 60.6
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 3.0e-33 145.6 139 59.0
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 8.3e-31 137.5 131 54.2
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 6.0e-29 131.3 140 54.3
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 2.3e-25 119.4 109 63.3
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 7.5e-24 114.4 90 71.1
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 4.9e-23 111.7 104 60.6
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 3.0e-20 102.4 138 42.0
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 6.6e-20 101.3 138 39.9
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 1.9e-14 83.2 46 87.0
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 6.0e-13 78.2 87 48.3


User provided reference genes

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